Wall clock time and date at job start Tue Mar 31 2020 14:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35915 * 116.99974 * 2 1 4 4 C 1.38948 * 119.96140 * 0.02562 * 3 2 1 5 5 C 1.38326 * 120.33909 * 179.97438 * 4 3 2 6 6 C 1.37874 * 120.25620 * 359.74133 * 5 4 3 7 7 C 1.40065 * 119.91546 * 0.51557 * 6 5 4 8 8 C 1.46710 * 120.17320 * 179.76781 * 7 6 5 9 9 C 1.37625 * 120.00484 * 210.74160 * 8 7 6 10 10 C 1.43202 * 119.99553 * 6.95382 * 9 8 7 11 11 N 4.18465 * 151.51516 * 264.48777 * 2 1 3 12 12 C 1.47086 * 120.00107 * 186.95692 * 9 8 7 13 13 O 1.21555 * 120.00558 * 5.09844 * 12 9 8 14 14 O 1.34813 * 119.99972 * 185.10293 * 12 9 8 15 15 C 1.45203 * 116.99946 * 185.08165 * 14 12 9 16 16 C 1.53009 * 109.47116 * 184.90759 * 15 14 12 17 17 C 1.50701 * 115.54747 * 305.01290 * 16 15 14 18 18 H 1.08005 * 119.99510 * 278.43495 * 17 16 15 19 19 C 1.37873 * 120.00224 * 98.15941 * 17 16 15 20 20 N 1.31515 * 119.99763 * 174.55694 * 19 17 16 21 21 Si 1.86799 * 120.00128 * 354.55463 * 19 17 16 22 22 H 1.48495 * 109.47031 * 94.72940 * 21 19 17 23 23 H 1.48497 * 109.47016 * 214.73170 * 21 19 17 24 24 H 1.48503 * 109.46846 * 334.73078 * 21 19 17 25 25 C 1.53000 * 117.51584 * 90.70843 * 16 15 14 26 26 C 1.52999 * 117.50023 * 159.33740 * 16 15 14 27 27 C 1.38314 * 119.95792 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47100 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47236 * 300.00628 * 1 2 3 30 30 H 1.09001 * 109.47005 * 60.00258 * 1 2 3 31 31 H 1.08004 * 119.82828 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.87303 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.04536 * 180.27763 * 6 5 4 34 34 H 1.08003 * 119.99706 * 30.73456 * 8 7 6 35 35 H 1.08992 * 109.47125 * 64.91028 * 15 14 12 36 36 H 1.08994 * 109.47058 * 304.90629 * 15 14 12 37 37 H 0.97006 * 119.99519 * 180.02562 * 20 19 17 38 38 H 1.09004 * 117.49458 * 214.97343 * 25 16 15 39 39 H 1.08997 * 117.50227 * 359.97438 * 25 16 15 40 40 H 1.08998 * 117.49270 * 359.97438 * 26 16 15 41 41 H 1.08994 * 117.49862 * 144.97283 * 26 16 15 42 42 H 1.08003 * 120.13134 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2884 2.3758 0.0005 5 6 1.9083 3.6124 0.0011 6 6 3.2842 3.6998 0.0065 7 6 4.0584 2.5325 0.0005 8 6 5.5229 2.6190 0.0010 9 6 6.2703 1.6401 -0.6132 10 6 5.6216 0.6188 -1.3792 11 7 5.1070 -0.1917 -1.9865 12 6 7.7354 1.6430 -0.4828 13 8 8.2796 2.4532 0.2417 14 8 8.4747 0.7470 -1.1670 15 6 9.9027 0.7329 -0.9043 16 6 10.5861 -0.2541 -1.8529 17 6 10.0409 -1.6589 -1.8323 18 1 10.3556 -2.3490 -1.0634 19 6 9.1360 -2.0614 -2.7916 20 7 8.7419 -3.3152 -2.8388 21 14 8.4699 -0.8258 -4.0241 22 1 9.2814 -0.8794 -5.2665 23 1 7.0571 -1.1554 -4.3410 24 1 8.5417 0.5395 -3.4443 25 6 11.0933 0.2873 -3.1911 26 6 12.0880 -0.0826 -2.0890 27 6 3.4273 1.2824 0.0005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2101 2.3153 0.0005 32 1 1.3121 4.5130 0.0019 33 1 3.7646 4.6671 0.0114 34 1 6.0145 3.4509 0.4834 35 1 10.0795 0.4274 0.1269 36 1 10.3111 1.7310 -1.0626 37 1 8.1055 -3.5984 -3.5139 38 1 11.0326 -0.3727 -4.0565 39 1 10.9398 1.3467 -3.3961 40 1 12.5891 0.7337 -1.5688 41 1 12.6819 -0.9858 -2.2289 42 1 4.0169 0.3775 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:42 Heat of formation + Delta-G solvation = -5.938123 kcal Electronic energy + Delta-G solvation = -26847.041552 eV Core-core repulsion = 22953.116579 eV Total energy + Delta-G solvation = -3893.924973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.54813 -39.98292 -38.19137 -37.20502 -36.50293 -35.54344 -33.85960 -32.00222 -31.02993 -30.30730 -27.70372 -27.28998 -25.47973 -24.78749 -22.94004 -21.84822 -21.49731 -21.35008 -19.13101 -18.90011 -17.50634 -16.92759 -16.58526 -16.42362 -16.12831 -16.02475 -15.70623 -15.44454 -14.75164 -14.48319 -14.20253 -13.91419 -13.73608 -13.52399 -13.08650 -12.94606 -12.71063 -12.61141 -12.52447 -12.39079 -12.18477 -12.07876 -11.92275 -11.53878 -11.20264 -11.10439 -10.89355 -10.45708 -10.33425 -10.24675 -10.18594 -9.98247 -9.40421 -9.10237 -8.87480 -8.51090 -8.49258 -8.45771 -6.03943 -4.08623 -0.08606 1.09014 1.35902 2.61682 2.74044 2.93916 3.11979 3.35334 3.43451 3.57169 3.63088 3.70224 3.91033 4.30471 4.39932 4.56372 4.64546 4.74504 4.81528 4.82494 4.83143 4.97206 5.07148 5.17118 5.18857 5.25296 5.45518 5.59650 5.63653 5.65928 5.89249 5.89868 5.97781 6.01213 6.09985 6.11441 6.28836 6.31921 6.42102 6.63852 6.76930 7.02984 7.06209 7.07592 7.67201 7.75153 8.10422 8.51083 8.96172 9.60977 11.07079 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.003540 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.651217 B = 7907.558759 C = 9034.648700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.129 3.871 4 C -0.191 4.191 5 C -0.086 4.086 6 C -0.120 4.120 7 C -0.057 4.057 8 C 0.051 3.949 9 C -0.075 4.075 10 C 0.241 3.759 11 N -0.380 5.380 12 C 0.509 3.491 13 O -0.512 6.512 14 O -0.312 6.312 15 C 0.109 3.891 16 C -0.004 4.004 17 C -0.493 4.493 18 H 0.078 0.922 19 C 0.090 3.910 20 N -0.894 5.894 21 Si 0.874 3.126 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.243 1.243 25 C -0.202 4.202 26 C -0.167 4.167 27 C -0.124 4.124 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.170 0.830 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.264 0.736 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.165 16.232 7.201 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.083 3.917 4 C -0.209 4.209 5 C -0.104 4.104 6 C -0.138 4.138 7 C -0.057 4.057 8 C 0.028 3.972 9 C -0.079 4.079 10 C -0.074 4.074 11 N -0.056 5.056 12 C 0.353 3.647 13 O -0.404 6.404 14 O -0.226 6.226 15 C 0.036 3.964 16 C -0.005 4.005 17 C -0.530 4.530 18 H 0.096 0.904 19 C -0.114 4.114 20 N -0.530 5.530 21 Si 0.703 3.297 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.167 1.167 25 C -0.238 4.238 26 C -0.205 4.205 27 C -0.143 4.143 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.187 0.813 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.762 14.826 6.342 22.549 hybrid contribution -0.362 0.904 -0.523 1.105 sum -16.124 15.730 5.819 23.265 Atomic orbital electron populations 1.23095 0.78201 1.04304 1.01218 1.86170 1.21492 1.26398 1.88399 1.18846 0.91961 0.84592 0.96263 1.21466 1.00306 0.92325 1.06843 1.20868 0.94430 0.97076 0.98002 1.21270 0.93662 0.97477 1.01430 1.18702 0.91934 0.93031 1.02015 1.23095 0.91266 0.94375 0.88431 1.17577 0.90372 0.95698 1.04292 1.25118 0.94096 0.93796 0.94422 1.81301 1.08510 1.07702 1.08048 1.20465 0.87073 0.79465 0.77674 1.90828 1.72958 1.38760 1.37833 1.86891 1.23314 1.53301 1.59055 1.22923 0.74823 0.98250 1.00397 1.19375 0.92206 0.95713 0.93238 1.20118 1.25904 0.92547 1.14414 0.90370 1.24904 0.94894 0.94653 0.96935 1.69885 1.32371 1.15716 1.35048 0.86933 0.77757 0.84188 0.80792 1.21598 1.21931 1.16654 1.22999 1.06793 0.99540 0.94512 1.22898 0.92934 1.01850 1.02771 1.21003 0.92214 0.98236 1.02870 0.87985 0.92560 0.92581 0.85085 0.85035 0.84597 0.81252 0.91183 0.92892 0.92591 0.89246 0.90591 0.90669 0.88785 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.86 10.49 -19.47 -0.20 -4.07 16 3 C 0.13 1.55 6.68 -39.29 -0.26 1.29 16 4 C -0.19 -1.71 9.04 -39.29 -0.36 -2.06 16 5 C -0.09 -0.66 10.02 -39.68 -0.40 -1.06 16 6 C -0.12 -1.00 9.80 -39.03 -0.38 -1.39 16 7 C -0.06 -0.63 5.56 -105.12 -0.58 -1.21 16 8 C 0.05 0.58 9.45 -36.39 -0.34 0.23 16 9 C -0.07 -1.18 5.83 -104.61 -0.61 -1.79 16 10 C 0.24 4.56 11.31 -22.47 -0.25 4.30 16 11 N -0.38 -8.16 18.00 41.84 0.75 -7.41 16 12 C 0.51 9.37 7.86 34.32 0.27 9.64 16 13 O -0.51 -9.26 16.02 -19.31 -0.31 -9.57 16 14 O -0.31 -6.88 6.90 -40.80 -0.28 -7.16 16 15 C 0.11 2.30 5.46 37.16 0.20 2.50 16 16 C 0.00 -0.10 1.38 -155.66 -0.22 -0.32 16 17 C -0.49 -13.98 9.22 -34.44 -0.32 -14.29 16 18 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 19 C 0.09 2.67 5.46 -17.82 -0.10 2.57 16 20 N -0.89 -28.24 13.96 55.43 0.77 -27.47 16 21 Si 0.87 23.31 23.62 -169.99 -4.02 19.30 16 22 H -0.29 -7.52 6.99 56.52 0.40 -7.12 16 23 H -0.29 -8.15 7.11 56.52 0.40 -7.75 16 24 H -0.24 -6.08 5.27 56.52 0.30 -5.78 16 25 C -0.20 -4.35 7.18 -26.73 -0.19 -4.54 16 26 C -0.17 -3.32 9.95 -26.73 -0.27 -3.59 16 27 C -0.12 -1.66 8.24 -38.88 -0.32 -1.98 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16 30 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.13 0.84 6.27 -52.48 -0.33 0.51 16 32 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.17 1.43 7.63 -52.48 -0.40 1.03 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.05 1.00 7.92 -51.93 -0.41 0.58 16 37 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 38 H 0.09 2.07 6.22 -51.93 -0.32 1.75 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 42 H 0.14 2.15 5.55 -52.48 -0.29 1.86 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -35.64 362.70 -6.13 -41.77 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.18 Total: -0.37 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -3.13 Total: -10.50 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 1.53 Total: -34.87 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.80 Total: -20.80 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.02 Total: 19.30 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.64 -6.13 -41.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.835 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds