Wall clock time and date at job start Tue Mar 31 2020 14:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35915 * 116.99974 * 2 1 4 4 C 1.38948 * 119.96140 * 0.02562 * 3 2 1 5 5 C 1.38326 * 120.33909 * 179.97438 * 4 3 2 6 6 C 1.37874 * 120.25620 * 359.74133 * 5 4 3 7 7 C 1.40065 * 119.91546 * 0.51557 * 6 5 4 8 8 C 1.46710 * 120.17320 * 179.76781 * 7 6 5 9 9 C 1.37625 * 120.00484 * 210.74160 * 8 7 6 10 10 C 1.43202 * 119.99553 * 6.95382 * 9 8 7 11 11 N 4.18465 * 151.51516 * 264.48777 * 2 1 3 12 12 C 1.47086 * 120.00107 * 186.95692 * 9 8 7 13 13 O 1.21555 * 120.00558 * 5.09844 * 12 9 8 14 14 O 1.34813 * 119.99972 * 185.10293 * 12 9 8 15 15 C 1.45203 * 116.99946 * 185.08165 * 14 12 9 16 16 C 1.53009 * 109.47116 * 184.90759 * 15 14 12 17 17 C 1.50701 * 115.54747 * 305.01290 * 16 15 14 18 18 H 1.08005 * 119.99510 * 278.43495 * 17 16 15 19 19 C 1.37873 * 120.00224 * 98.15941 * 17 16 15 20 20 N 1.31515 * 119.99763 * 174.55694 * 19 17 16 21 21 Si 1.86799 * 120.00128 * 354.55463 * 19 17 16 22 22 H 1.48495 * 109.47031 * 94.72940 * 21 19 17 23 23 H 1.48497 * 109.47016 * 214.73170 * 21 19 17 24 24 H 1.48503 * 109.46846 * 334.73078 * 21 19 17 25 25 C 1.53000 * 117.51584 * 90.70843 * 16 15 14 26 26 C 1.52999 * 117.50023 * 159.33740 * 16 15 14 27 27 C 1.38314 * 119.95792 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47100 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47236 * 300.00628 * 1 2 3 30 30 H 1.09001 * 109.47005 * 60.00258 * 1 2 3 31 31 H 1.08004 * 119.82828 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.87303 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.04536 * 180.27763 * 6 5 4 34 34 H 1.08003 * 119.99706 * 30.73456 * 8 7 6 35 35 H 1.08992 * 109.47125 * 64.91028 * 15 14 12 36 36 H 1.08994 * 109.47058 * 304.90629 * 15 14 12 37 37 H 0.97006 * 119.99519 * 180.02562 * 20 19 17 38 38 H 1.09004 * 117.49458 * 214.97343 * 25 16 15 39 39 H 1.08997 * 117.50227 * 359.97438 * 25 16 15 40 40 H 1.08998 * 117.49270 * 359.97438 * 26 16 15 41 41 H 1.08994 * 117.49862 * 144.97283 * 26 16 15 42 42 H 1.08003 * 120.13134 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2884 2.3758 0.0005 5 6 1.9083 3.6124 0.0011 6 6 3.2842 3.6998 0.0065 7 6 4.0584 2.5325 0.0005 8 6 5.5229 2.6190 0.0010 9 6 6.2703 1.6401 -0.6132 10 6 5.6216 0.6188 -1.3792 11 7 5.1070 -0.1917 -1.9865 12 6 7.7354 1.6430 -0.4828 13 8 8.2796 2.4532 0.2417 14 8 8.4747 0.7470 -1.1670 15 6 9.9027 0.7329 -0.9043 16 6 10.5861 -0.2541 -1.8529 17 6 10.0409 -1.6589 -1.8323 18 1 10.3556 -2.3490 -1.0634 19 6 9.1360 -2.0614 -2.7916 20 7 8.7419 -3.3152 -2.8388 21 14 8.4699 -0.8258 -4.0241 22 1 9.2814 -0.8794 -5.2665 23 1 7.0571 -1.1554 -4.3410 24 1 8.5417 0.5395 -3.4443 25 6 11.0933 0.2873 -3.1911 26 6 12.0880 -0.0826 -2.0890 27 6 3.4273 1.2824 0.0005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2101 2.3153 0.0005 32 1 1.3121 4.5130 0.0019 33 1 3.7646 4.6671 0.0114 34 1 6.0145 3.4509 0.4834 35 1 10.0795 0.4274 0.1269 36 1 10.3111 1.7310 -1.0626 37 1 8.1055 -3.5984 -3.5139 38 1 11.0326 -0.3727 -4.0565 39 1 10.9398 1.3467 -3.3961 40 1 12.5891 0.7337 -1.5688 41 1 12.6819 -0.9858 -2.2289 42 1 4.0169 0.3775 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:41 Heat of formation + Delta-G solvation = -29.060700 kcal Electronic energy + Delta-G solvation = -26848.044222 eV Core-core repulsion = 22953.116579 eV Total energy + Delta-G solvation = -3894.927643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.57165 -41.14606 -39.23084 -38.72129 -37.77427 -37.07768 -34.93886 -34.25771 -31.82076 -31.20757 -28.98816 -28.21710 -27.46750 -25.95637 -23.86310 -23.39039 -22.63783 -22.41060 -21.01112 -20.01731 -18.70067 -18.52851 -17.76901 -17.44110 -17.32113 -17.16610 -16.76412 -16.71436 -16.47055 -15.71673 -15.34799 -15.09581 -14.93750 -14.79196 -14.63974 -14.31399 -14.24034 -13.99207 -13.73567 -13.69649 -13.49526 -13.10650 -13.01373 -12.87698 -12.70612 -12.23732 -12.14387 -12.06189 -11.97602 -11.79983 -11.63960 -11.48062 -11.16134 -10.95457 -10.68886 -10.28913 -9.79175 -9.26972 -8.35742 -6.40547 -1.07046 0.34507 0.49953 1.15473 1.24368 1.37335 1.43896 1.48947 1.83618 2.24046 2.30741 2.34486 2.68530 2.71942 3.01918 3.13397 3.41256 3.70549 3.83577 3.99406 4.02495 4.08368 4.14423 4.22209 4.25559 4.32054 4.38355 4.39694 4.42285 4.50110 4.64642 4.67783 4.75739 4.82227 4.83054 5.00601 5.15595 5.17854 5.30910 5.34405 5.42613 5.53097 5.65173 5.66590 6.21133 6.31298 6.34481 6.62838 6.73737 7.31764 8.78894 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.003540 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.651217 B = 7907.558759 C = 9034.648700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.350 6.350 3 C 0.101 3.899 4 C -0.177 4.177 5 C -0.081 4.081 6 C -0.097 4.097 7 C -0.084 4.084 8 C 0.125 3.875 9 C -0.134 4.134 10 C 0.265 3.735 11 N -0.453 5.453 12 C 0.516 3.484 13 O -0.512 6.512 14 O -0.349 6.349 15 C 0.114 3.886 16 C -0.041 4.041 17 C -0.483 4.483 18 H 0.037 0.963 19 C 0.037 3.963 20 N -0.946 5.946 21 Si 0.926 3.074 22 H -0.278 1.278 23 H -0.320 1.320 24 H -0.214 1.214 25 C -0.201 4.201 26 C -0.138 4.138 27 C -0.153 4.153 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.175 0.825 33 H 0.178 0.822 34 H 0.212 0.788 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.260 0.740 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.033 22.103 8.188 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.264 6.264 3 C 0.056 3.944 4 C -0.196 4.196 5 C -0.099 4.099 6 C -0.115 4.115 7 C -0.085 4.085 8 C 0.103 3.897 9 C -0.138 4.138 10 C -0.048 4.048 11 N -0.130 5.130 12 C 0.361 3.639 13 O -0.404 6.404 14 O -0.265 6.265 15 C 0.041 3.959 16 C -0.042 4.042 17 C -0.520 4.520 18 H 0.055 0.945 19 C -0.161 4.161 20 N -0.586 5.586 21 Si 0.754 3.246 22 H -0.205 1.205 23 H -0.249 1.249 24 H -0.137 1.137 25 C -0.238 4.238 26 C -0.175 4.175 27 C -0.173 4.173 28 H 0.127 0.873 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.176 0.824 32 H 0.192 0.808 33 H 0.196 0.804 34 H 0.229 0.771 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.138 0.862 41 H 0.104 0.896 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.604 20.735 7.348 27.561 hybrid contribution -0.282 -0.839 -0.627 1.085 sum -16.886 19.895 6.721 26.947 Atomic orbital electron populations 1.23371 0.76004 1.05468 1.02738 1.86121 1.24007 1.27491 1.88810 1.19101 0.91899 0.85640 0.97757 1.21878 1.01642 0.91707 1.04367 1.21430 0.94625 0.97874 0.95949 1.21776 0.93971 0.97752 0.98016 1.18857 0.91905 0.93373 1.04316 1.23656 0.91302 0.92320 0.82445 1.17479 0.89258 0.98036 1.09073 1.25679 0.92819 0.93181 0.93150 1.81286 1.10578 1.09913 1.11231 1.20590 0.87542 0.78649 0.77114 1.90804 1.73124 1.38655 1.37829 1.86851 1.23913 1.55083 1.60649 1.22790 0.74797 0.98877 0.99470 1.19352 0.95151 0.93627 0.96042 1.20375 1.24598 0.94887 1.12147 0.94454 1.25611 0.95585 0.95773 0.99113 1.70028 1.34156 1.17861 1.36573 0.86124 0.75437 0.83760 0.79290 1.20466 1.24889 1.13665 1.23043 1.06911 1.00748 0.93052 1.22966 0.90790 1.02848 1.00933 1.20982 0.93122 0.98102 1.05045 0.87285 0.90473 0.91386 0.82385 0.80799 0.80424 0.77125 0.91199 0.89700 0.93158 0.91365 0.87454 0.86215 0.89570 0.87962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.35 -9.05 10.49 -92.59 -0.97 -10.03 16 3 C 0.10 2.41 6.68 22.46 0.15 2.56 16 4 C -0.18 -2.60 9.04 22.46 0.20 -2.40 16 5 C -0.08 -0.81 10.02 22.20 0.22 -0.59 16 6 C -0.10 -1.11 9.80 22.63 0.22 -0.88 16 7 C -0.08 -1.66 5.56 -20.18 -0.11 -1.77 16 8 C 0.12 2.46 9.45 24.34 0.23 2.69 16 9 C -0.13 -4.15 5.83 -19.85 -0.12 -4.26 16 10 C 0.27 10.56 11.31 88.33 1.00 11.56 16 11 N -0.45 -21.04 18.00 19.00 0.34 -20.69 16 12 C 0.52 18.37 7.86 70.14 0.55 18.93 16 13 O -0.51 -17.12 16.02 19.66 0.31 -16.81 16 14 O -0.35 -15.29 6.90 -57.25 -0.40 -15.69 16 15 C 0.11 4.59 5.46 71.99 0.39 4.98 16 16 C -0.04 -1.87 1.38 -52.92 -0.07 -1.94 16 17 C -0.48 -28.41 9.22 25.60 0.24 -28.18 16 18 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 19 C 0.04 2.31 5.46 84.65 0.46 2.77 16 20 N -0.95 -63.66 13.96 21.45 0.30 -63.37 16 21 Si 0.93 50.05 23.62 68.60 1.62 51.67 16 22 H -0.28 -14.30 6.99 99.48 0.70 -13.60 16 23 H -0.32 -18.64 7.11 99.48 0.71 -17.93 16 24 H -0.21 -10.48 5.27 99.48 0.52 -9.96 16 25 C -0.20 -8.16 7.18 30.59 0.22 -7.94 16 26 C -0.14 -5.11 9.95 30.59 0.30 -4.80 16 27 C -0.15 -4.17 8.24 22.72 0.19 -3.98 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 0.72 7.65 -2.39 -0.02 0.70 16 30 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 31 H 0.16 1.38 6.27 -2.91 -0.02 1.36 16 32 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 33 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 34 H 0.21 2.36 7.63 -2.91 -0.02 2.34 16 35 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.08 2.86 7.92 -2.39 -0.02 2.84 16 37 H 0.26 16.85 8.31 -92.70 -0.77 16.08 16 38 H 0.07 3.07 6.22 -2.39 -0.01 3.06 16 39 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 40 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 41 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 42 H 0.10 3.51 5.55 -2.91 -0.02 3.49 16 Total: -1.00 -87.28 362.70 7.26 -80.02 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 0.86 Total: 6.78 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 5.19 Total: -11.89 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: 0.64 Total: -84.06 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -1.05 Total: -42.52 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 1.62 Total: 51.67 kcal Total: -87.28 7.26 -80.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.955 kcal (2) G-P(sol) polarization free energy of solvation -87.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds