Wall clock time and date at job start Tue Mar 31 2020 14:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35672 * 117.00264 * 2 1 4 4 C 1.39120 * 119.86662 * 180.02562 * 3 2 1 5 5 C 1.36594 * 120.13982 * 179.97438 * 4 3 2 6 6 C 1.40262 * 119.85964 * 359.97438 * 5 4 3 7 7 C 1.46405 * 120.13387 * 180.02562 * 6 5 4 8 8 C 1.37868 * 119.99868 * 143.99228 * 7 6 5 9 9 C 1.43201 * 119.99720 * 173.22571 * 8 7 6 10 10 N 8.91278 * 109.69853 * 356.60212 * 2 1 3 11 11 C 1.46963 * 120.00403 * 353.23229 * 8 7 6 12 12 O 1.21572 * 120.00152 * 107.94157 * 11 8 7 13 13 O 1.34833 * 119.99608 * 287.94300 * 11 8 7 14 14 C 1.45197 * 116.99844 * 185.07799 * 13 11 8 15 15 C 1.52997 * 109.47395 * 175.23966 * 14 13 11 16 16 C 1.50708 * 115.54901 * 305.09361 * 15 14 13 17 17 H 1.07996 * 120.00154 * 152.94488 * 16 15 14 18 18 C 1.37881 * 119.99397 * 332.94517 * 16 15 14 19 19 N 1.31510 * 120.00136 * 3.33261 * 18 16 15 20 20 Si 1.86799 * 119.99452 * 183.32400 * 18 16 15 21 21 H 1.48501 * 109.47311 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47046 * 120.00089 * 20 18 16 23 23 H 1.48497 * 109.47247 * 240.00119 * 20 18 16 24 24 C 1.53000 * 117.50201 * 159.42002 * 15 14 13 25 25 C 1.52998 * 117.50012 * 90.75984 * 15 14 13 26 26 C 1.40255 * 119.73012 * 0.27608 * 6 5 4 27 27 C 1.36599 * 119.86147 * 359.44626 * 26 6 5 28 28 H 1.09008 * 109.46671 * 300.00019 * 1 2 3 29 29 H 1.08999 * 109.46894 * 59.99681 * 1 2 3 30 30 H 1.08994 * 109.47388 * 180.02562 * 1 2 3 31 31 H 1.08006 * 119.92967 * 359.95637 * 4 3 2 32 32 H 1.08004 * 120.06909 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.99885 * 323.99543 * 7 6 5 34 34 H 1.09001 * 109.47301 * 295.23669 * 14 13 11 35 35 H 1.09000 * 109.47440 * 55.23386 * 14 13 11 36 36 H 0.97004 * 119.99370 * 185.01053 * 19 18 16 37 37 H 1.09001 * 117.49667 * 0.02562 * 24 15 14 38 38 H 1.08997 * 117.49828 * 145.01936 * 24 15 14 39 39 H 1.09002 * 117.50209 * 214.98049 * 25 15 14 40 40 H 1.09004 * 117.50167 * 359.97438 * 25 15 14 41 41 H 1.08000 * 120.07384 * 179.72432 * 26 6 5 42 42 H 1.08001 * 119.93181 * 180.30033 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4345 1.2783 -0.0005 5 6 4.0605 2.4924 -0.0011 6 6 3.2993 3.6705 -0.0016 7 6 3.9640 4.9750 -0.0028 8 6 3.4162 6.0272 -0.7052 9 6 3.9832 7.3371 -0.5905 10 7 4.4333 8.3764 -0.4973 11 6 2.2501 5.8046 -1.5716 12 8 1.1579 6.2233 -1.2404 13 8 2.3918 5.1359 -2.7339 14 6 1.2237 5.0511 -3.5922 15 6 1.6047 4.3655 -4.9058 16 6 2.7558 4.9875 -5.6536 17 1 3.3660 4.3814 -6.3068 18 6 3.0299 6.3305 -5.5038 19 7 2.3287 7.0545 -4.6590 20 14 4.3974 7.1214 -6.5006 21 1 5.0297 6.0988 -7.3722 22 1 3.8325 8.2071 -7.3417 23 1 5.4168 7.6872 -5.5809 24 6 0.4760 3.7476 -5.7335 25 6 1.4545 2.8446 -4.9784 26 6 1.8989 3.5939 0.0043 27 6 1.2845 2.3738 -0.0010 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.0195 0.3704 -0.0002 32 1 5.1392 2.5450 -0.0019 33 1 4.8836 5.1130 0.5467 34 1 0.4468 4.4725 -3.0924 35 1 0.8522 6.0545 -3.8004 36 1 2.4720 8.0124 -4.6061 37 1 -0.5381 3.8299 -5.3424 38 1 0.5662 3.7907 -6.8189 39 1 2.1881 2.2940 -5.5673 40 1 1.0847 2.3324 -4.0901 41 1 1.3074 4.4975 0.0084 42 1 0.2062 2.3135 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276420.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:55 Heat of formation + Delta-G solvation = -8.420277 kcal Electronic energy + Delta-G solvation = -27894.374141 eV Core-core repulsion = 24000.341534 eV Total energy + Delta-G solvation = -3894.032607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.39637 -39.55991 -37.76554 -36.87243 -36.36520 -34.91213 -33.68870 -32.22702 -31.32874 -29.74756 -27.52321 -26.58603 -25.46406 -24.41145 -22.63969 -21.91768 -21.25932 -20.63153 -19.18075 -18.30904 -17.83572 -16.77552 -16.51080 -16.13549 -15.88116 -15.81937 -15.22885 -14.74721 -14.60391 -14.15974 -13.89905 -13.62354 -13.47057 -13.40063 -13.20639 -12.99842 -12.76253 -12.63624 -12.16685 -11.95243 -11.88190 -11.70907 -11.45592 -11.35198 -11.07060 -10.84697 -10.74639 -10.51993 -10.35653 -10.12177 -9.65101 -9.58304 -9.28983 -9.15660 -9.00196 -8.82469 -8.31176 -7.91391 -6.01497 -4.14851 0.41097 1.35830 1.69663 2.45897 3.01327 3.11809 3.25337 3.35441 3.37620 3.38028 3.63081 3.85357 4.16109 4.34254 4.66693 4.74744 4.85826 4.89534 4.95881 5.01799 5.15685 5.27049 5.31776 5.34935 5.50802 5.55383 5.78627 5.84211 5.99171 6.03007 6.17042 6.19250 6.30380 6.44693 6.45891 6.58907 6.60004 6.61117 6.75622 6.93117 7.19704 7.23625 7.42470 7.51220 7.64675 7.86664 8.28283 8.57760 8.83828 9.47043 10.91318 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010582 B = 0.005161 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.317073 B = 5423.824478 C = 6954.560785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.146 3.854 4 C -0.155 4.155 5 C -0.042 4.042 6 C -0.126 4.126 7 C 0.029 3.971 8 C -0.076 4.076 9 C 0.270 3.730 10 N -0.409 5.409 11 C 0.523 3.477 12 O -0.519 6.519 13 O -0.294 6.294 14 C 0.129 3.871 15 C 0.045 3.955 16 C -0.476 4.476 17 H 0.063 0.937 18 C 0.075 3.925 19 N -0.884 5.884 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.200 4.200 25 C -0.208 4.208 26 C -0.056 4.056 27 C -0.205 4.205 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.150 0.850 34 H 0.018 0.982 35 H 0.117 0.883 36 H 0.261 0.739 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.141 0.859 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.803 -12.196 11.675 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.100 3.900 4 C -0.174 4.174 5 C -0.060 4.060 6 C -0.126 4.126 7 C 0.006 3.994 8 C -0.081 4.081 9 C -0.044 4.044 10 N -0.085 5.085 11 C 0.366 3.634 12 O -0.411 6.411 13 O -0.207 6.207 14 C 0.056 3.944 15 C 0.044 3.956 16 C -0.513 4.513 17 H 0.081 0.919 18 C -0.128 4.128 19 N -0.522 5.522 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.238 4.238 25 C -0.245 4.245 26 C -0.074 4.074 27 C -0.223 4.223 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.167 0.833 34 H 0.036 0.964 35 H 0.134 0.866 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.159 0.841 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.348 -10.509 11.945 15.913 hybrid contribution 0.011 0.265 -0.776 0.820 sum -0.337 -10.243 11.169 15.159 Atomic orbital electron populations 1.23114 0.78105 1.04002 1.01809 1.86003 1.21683 1.27073 1.88031 1.19357 0.92462 0.84089 0.94124 1.20072 0.91175 0.98805 1.07337 1.20852 0.99894 0.90362 0.94896 1.18747 0.93251 0.92397 1.08200 1.22723 0.95576 0.89069 0.91992 1.17368 0.99222 0.87887 1.03607 1.24890 0.93560 0.92218 0.93780 1.81201 1.08772 1.10040 1.08451 1.20184 0.86775 0.75178 0.81288 1.90809 1.27417 1.48754 1.74084 1.86621 1.42630 1.64584 1.26839 1.22802 0.82186 1.03043 0.86344 1.18972 0.95682 0.88722 0.92219 1.20528 1.11745 0.93837 1.25156 0.91918 1.24931 0.96091 0.97358 0.94373 1.69817 1.41180 1.06424 1.34786 0.86473 0.81950 0.79339 0.79949 1.19615 1.20881 1.20863 1.23011 0.94293 1.07970 0.98499 1.22943 1.03416 0.96587 1.01602 1.21444 0.93628 0.98680 0.93637 1.20921 1.00384 0.92036 1.09001 0.92507 0.92137 0.88192 0.84766 0.84448 0.83252 0.96375 0.86571 0.92832 0.91445 0.89841 0.90398 0.91414 0.84148 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.80 101.05 0.99 1.19 16 2 O -0.32 -3.61 10.48 -18.72 -0.20 -3.80 16 3 C 0.15 1.81 6.70 -38.92 -0.26 1.54 16 4 C -0.16 -1.77 9.92 -39.85 -0.40 -2.16 16 5 C -0.04 -0.46 9.75 -39.42 -0.38 -0.85 16 6 C -0.13 -1.65 5.48 -105.09 -0.58 -2.23 16 7 C 0.03 0.38 9.58 -36.43 -0.35 0.03 16 8 C -0.08 -1.31 5.68 -104.57 -0.59 -1.91 16 9 C 0.27 4.97 15.36 -22.46 -0.34 4.62 16 10 N -0.41 -8.00 18.54 41.85 0.78 -7.23 16 11 C 0.52 10.97 4.47 34.26 0.15 11.12 16 12 O -0.52 -11.63 15.51 -19.32 -0.30 -11.93 16 13 O -0.29 -6.83 9.11 -40.85 -0.37 -7.21 16 14 C 0.13 3.08 4.31 37.16 0.16 3.24 16 15 C 0.04 1.07 2.29 -155.66 -0.36 0.72 16 16 C -0.48 -12.56 8.89 -34.43 -0.31 -12.86 16 17 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 18 C 0.07 1.98 5.26 -17.82 -0.09 1.89 16 19 N -0.88 -24.08 9.46 55.43 0.52 -23.56 16 20 Si 0.90 21.05 29.54 -169.99 -5.02 16.02 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C -0.20 -4.24 9.96 -26.69 -0.27 -4.51 16 25 C -0.21 -4.36 9.93 -26.70 -0.26 -4.63 16 26 C -0.06 -0.80 8.28 -39.42 -0.33 -1.13 16 27 C -0.20 -2.64 8.97 -39.84 -0.36 -3.00 16 28 H 0.06 0.39 7.65 -51.92 -0.40 0.00 16 29 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 32 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.02 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.12 3.09 5.98 -51.93 -0.31 2.78 16 36 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 39 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.14 2.23 5.33 -52.49 -0.28 1.95 16 42 H 0.13 1.46 6.27 -52.49 -0.33 1.13 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -31.12 370.58 -7.64 -38.75 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.06 Total: 2.28 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -3.57 Total: -8.92 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 1.30 Total: -30.79 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.87 Total: -22.94 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.12 -7.64 -38.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276420.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.332 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds