Wall clock time and date at job start Tue Mar 31 2020 14:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35672 * 117.00264 * 2 1 4 4 C 1.39120 * 119.86662 * 180.02562 * 3 2 1 5 5 C 1.36594 * 120.13982 * 179.97438 * 4 3 2 6 6 C 1.40262 * 119.85964 * 359.97438 * 5 4 3 7 7 C 1.46405 * 120.13387 * 180.02562 * 6 5 4 8 8 C 1.37868 * 119.99868 * 143.99228 * 7 6 5 9 9 C 1.43201 * 119.99720 * 173.22571 * 8 7 6 10 10 N 8.91278 * 109.69853 * 356.60212 * 2 1 3 11 11 C 1.46963 * 120.00403 * 353.23229 * 8 7 6 12 12 O 1.21572 * 120.00152 * 107.94157 * 11 8 7 13 13 O 1.34833 * 119.99608 * 287.94300 * 11 8 7 14 14 C 1.45197 * 116.99844 * 185.07799 * 13 11 8 15 15 C 1.52997 * 109.47395 * 175.23966 * 14 13 11 16 16 C 1.50708 * 115.54901 * 305.09361 * 15 14 13 17 17 H 1.07996 * 120.00154 * 152.94488 * 16 15 14 18 18 C 1.37881 * 119.99397 * 332.94517 * 16 15 14 19 19 N 1.31510 * 120.00136 * 3.33261 * 18 16 15 20 20 Si 1.86799 * 119.99452 * 183.32400 * 18 16 15 21 21 H 1.48501 * 109.47311 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47046 * 120.00089 * 20 18 16 23 23 H 1.48497 * 109.47247 * 240.00119 * 20 18 16 24 24 C 1.53000 * 117.50201 * 159.42002 * 15 14 13 25 25 C 1.52998 * 117.50012 * 90.75984 * 15 14 13 26 26 C 1.40255 * 119.73012 * 0.27608 * 6 5 4 27 27 C 1.36599 * 119.86147 * 359.44626 * 26 6 5 28 28 H 1.09008 * 109.46671 * 300.00019 * 1 2 3 29 29 H 1.08999 * 109.46894 * 59.99681 * 1 2 3 30 30 H 1.08994 * 109.47388 * 180.02562 * 1 2 3 31 31 H 1.08006 * 119.92967 * 359.95637 * 4 3 2 32 32 H 1.08004 * 120.06909 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.99885 * 323.99543 * 7 6 5 34 34 H 1.09001 * 109.47301 * 295.23669 * 14 13 11 35 35 H 1.09000 * 109.47440 * 55.23386 * 14 13 11 36 36 H 0.97004 * 119.99370 * 185.01053 * 19 18 16 37 37 H 1.09001 * 117.49667 * 0.02562 * 24 15 14 38 38 H 1.08997 * 117.49828 * 145.01936 * 24 15 14 39 39 H 1.09002 * 117.50209 * 214.98049 * 25 15 14 40 40 H 1.09004 * 117.50167 * 359.97438 * 25 15 14 41 41 H 1.08000 * 120.07384 * 179.72432 * 26 6 5 42 42 H 1.08001 * 119.93181 * 180.30033 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4345 1.2783 -0.0005 5 6 4.0605 2.4924 -0.0011 6 6 3.2993 3.6705 -0.0016 7 6 3.9640 4.9750 -0.0028 8 6 3.4162 6.0272 -0.7052 9 6 3.9832 7.3371 -0.5905 10 7 4.4333 8.3764 -0.4973 11 6 2.2501 5.8046 -1.5716 12 8 1.1579 6.2233 -1.2404 13 8 2.3918 5.1359 -2.7339 14 6 1.2237 5.0511 -3.5922 15 6 1.6047 4.3655 -4.9058 16 6 2.7558 4.9875 -5.6536 17 1 3.3660 4.3814 -6.3068 18 6 3.0299 6.3305 -5.5038 19 7 2.3287 7.0545 -4.6590 20 14 4.3974 7.1214 -6.5006 21 1 5.0297 6.0988 -7.3722 22 1 3.8325 8.2071 -7.3417 23 1 5.4168 7.6872 -5.5809 24 6 0.4760 3.7476 -5.7335 25 6 1.4545 2.8446 -4.9784 26 6 1.8989 3.5939 0.0043 27 6 1.2845 2.3738 -0.0010 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.0195 0.3704 -0.0002 32 1 5.1392 2.5450 -0.0019 33 1 4.8836 5.1130 0.5467 34 1 0.4468 4.4725 -3.0924 35 1 0.8522 6.0545 -3.8004 36 1 2.4720 8.0124 -4.6061 37 1 -0.5381 3.8299 -5.3424 38 1 0.5662 3.7907 -6.8189 39 1 2.1881 2.2940 -5.5673 40 1 1.0847 2.3324 -4.0901 41 1 1.3074 4.4975 0.0084 42 1 0.2062 2.3135 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276420.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:54 Heat of formation + Delta-G solvation = -23.822384 kcal Electronic energy + Delta-G solvation = -27895.042026 eV Core-core repulsion = 24000.341534 eV Total energy + Delta-G solvation = -3894.700493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55017 -40.88189 -38.92408 -38.39883 -37.82178 -36.62620 -34.86328 -34.20714 -32.26796 -30.78699 -28.48803 -28.14388 -27.42020 -25.58890 -23.58647 -23.31039 -22.90617 -21.77308 -21.05434 -19.39627 -19.15546 -18.54334 -17.89019 -17.41671 -17.06305 -16.92197 -16.67199 -16.33850 -15.88996 -15.56409 -15.03107 -14.93146 -14.87857 -14.67451 -14.46230 -14.31042 -14.18188 -13.70262 -13.65435 -13.53856 -13.22768 -12.98464 -12.89563 -12.73675 -12.63794 -12.31981 -12.19851 -12.11462 -11.85637 -11.72808 -11.36623 -11.10901 -10.87989 -10.75780 -10.67061 -10.20452 -10.09156 -8.93517 -7.99917 -6.18422 -0.70331 0.40904 0.66677 0.95909 1.37541 1.42686 1.51662 1.53464 1.97454 2.32851 2.34586 2.41360 2.73120 2.89597 3.04324 3.59559 3.71307 3.82027 3.87942 3.91156 4.19273 4.27277 4.32542 4.39283 4.41399 4.43516 4.59064 4.65094 4.69666 4.75091 4.80015 4.83427 4.94217 5.01614 5.02767 5.21673 5.25184 5.34040 5.47409 5.48349 5.54847 5.70556 5.80061 5.85543 6.27461 6.32710 6.36638 6.76776 6.97951 7.44281 8.88865 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010582 B = 0.005161 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.317073 B = 5423.824478 C = 6954.560785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.146 3.854 4 C -0.162 4.162 5 C -0.025 4.025 6 C -0.154 4.154 7 C 0.094 3.906 8 C -0.136 4.136 9 C 0.286 3.714 10 N -0.446 5.446 11 C 0.527 3.473 12 O -0.546 6.546 13 O -0.308 6.308 14 C 0.141 3.859 15 C 0.004 3.996 16 C -0.486 4.486 17 H 0.057 0.943 18 C 0.034 3.966 19 N -0.902 5.902 20 Si 0.945 3.055 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.290 1.290 24 C -0.189 4.189 25 C -0.184 4.184 26 C -0.071 4.071 27 C -0.218 4.218 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.125 0.875 31 H 0.159 0.841 32 H 0.176 0.824 33 H 0.201 0.799 34 H 0.026 0.974 35 H 0.083 0.917 36 H 0.252 0.748 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.117 0.883 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.516 -15.041 12.314 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.100 3.900 4 C -0.180 4.180 5 C -0.043 4.043 6 C -0.155 4.155 7 C 0.072 3.928 8 C -0.140 4.140 9 C -0.027 4.027 10 N -0.123 5.123 11 C 0.371 3.629 12 O -0.440 6.440 13 O -0.221 6.221 14 C 0.067 3.933 15 C 0.004 3.996 16 C -0.523 4.523 17 H 0.076 0.924 18 C -0.166 4.166 19 N -0.541 5.541 20 Si 0.772 3.228 21 H -0.186 1.186 22 H -0.209 1.209 23 H -0.216 1.216 24 C -0.227 4.227 25 C -0.222 4.222 26 C -0.089 4.089 27 C -0.237 4.237 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.177 0.823 32 H 0.194 0.806 33 H 0.218 0.782 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.964 -13.374 12.578 18.385 hybrid contribution -0.503 0.867 -0.902 1.349 sum 0.461 -12.507 11.676 17.116 Atomic orbital electron populations 1.23382 0.76504 1.05820 1.02137 1.86004 1.23389 1.26554 1.87631 1.19605 0.93187 0.84141 0.93109 1.20476 0.90968 0.99973 1.06563 1.21257 1.01628 0.89105 0.92313 1.18957 0.93029 0.93370 1.10106 1.23330 0.95004 0.87215 0.87268 1.17103 1.00832 0.88854 1.07252 1.25026 0.92743 0.92185 0.92751 1.81195 1.10388 1.10602 1.10148 1.20713 0.87643 0.73894 0.80616 1.90767 1.29051 1.49631 1.74508 1.86602 1.42312 1.65523 1.27690 1.22474 0.82773 1.01199 0.86832 1.19111 0.96729 0.90990 0.92820 1.20747 1.12426 0.94030 1.25145 0.92438 1.25517 0.97816 0.97930 0.95309 1.70019 1.42387 1.05840 1.35864 0.85695 0.79733 0.78654 0.78762 1.18551 1.20873 1.21636 1.23025 0.94567 1.06634 0.98434 1.22920 1.02782 0.94552 1.01906 1.21390 0.94451 0.98355 0.94698 1.21034 1.01108 0.91965 1.09549 0.91490 0.92531 0.85702 0.82348 0.80619 0.78238 0.95570 0.89952 0.93774 0.89855 0.89708 0.89889 0.89764 0.86521 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.80 113.37 1.11 1.33 16 2 O -0.32 -6.58 10.48 -89.90 -0.94 -7.53 16 3 C 0.15 3.28 6.70 22.70 0.15 3.43 16 4 C -0.16 -3.08 9.92 22.10 0.22 -2.86 16 5 C -0.03 -0.46 9.75 22.38 0.22 -0.24 16 6 C -0.15 -3.70 5.48 -20.17 -0.11 -3.81 16 7 C 0.09 2.18 9.58 24.31 0.23 2.41 16 8 C -0.14 -4.66 5.68 -19.83 -0.11 -4.77 16 9 C 0.29 10.66 15.36 88.33 1.36 12.01 16 10 N -0.45 -17.82 18.54 19.01 0.35 -17.47 16 11 C 0.53 22.73 4.47 70.11 0.31 23.04 16 12 O -0.55 -25.76 15.51 19.60 0.30 -25.46 16 13 O -0.31 -14.58 9.11 -57.45 -0.52 -15.11 16 14 C 0.14 6.85 4.31 71.98 0.31 7.16 16 15 C 0.00 0.19 2.29 -52.93 -0.12 0.07 16 16 C -0.49 -25.70 8.89 25.60 0.23 -25.47 16 17 H 0.06 3.01 7.82 -2.91 -0.02 2.99 16 18 C 0.03 1.81 5.26 84.66 0.44 2.26 16 19 N -0.90 -50.68 9.46 21.45 0.20 -50.48 16 20 Si 0.94 43.58 29.54 68.60 2.03 45.61 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 C -0.19 -7.77 9.96 30.62 0.30 -7.47 16 25 C -0.18 -7.38 9.93 30.62 0.30 -7.07 16 26 C -0.07 -1.99 8.28 22.38 0.19 -1.80 16 27 C -0.22 -5.40 8.97 22.10 0.20 -5.20 16 28 H 0.07 0.80 7.65 -2.38 -0.02 0.79 16 29 H 0.06 0.84 7.65 -2.39 -0.02 0.83 16 30 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.20 2.53 8.06 -2.91 -0.02 2.50 16 34 H 0.03 1.19 8.09 -2.39 -0.02 1.17 16 35 H 0.08 4.57 5.98 -2.39 -0.01 4.56 16 36 H 0.25 14.13 8.32 -92.71 -0.77 13.36 16 37 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 40 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.12 3.85 5.33 -2.91 -0.02 3.83 16 42 H 0.14 3.04 6.27 -2.91 -0.02 3.02 16 Total: -1.00 -70.11 370.58 7.71 -62.40 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.06 Total: 15.01 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 5.23 Total: -6.98 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: 0.56 Total: -67.95 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -1.16 Total: -48.09 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -70.11 7.71 -62.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276420.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.579 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds