Wall clock time and date at job start Tue Mar 31 2020 14:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35976 * 117.00495 * 2 1 4 4 C 1.38724 * 120.00054 * 0.02562 * 3 2 1 5 5 C 1.38108 * 120.00185 * 179.97438 * 4 3 2 6 6 C 1.38712 * 120.00118 * 0.02562 * 5 4 3 7 7 O 1.35979 * 120.00421 * 180.02562 * 6 5 4 8 8 C 1.38682 * 119.99939 * 0.02562 * 6 5 4 9 9 C 1.50698 * 119.99815 * 179.97438 * 8 6 5 10 10 N 1.46503 * 109.47720 * 285.00420 * 9 8 6 11 11 C 1.34771 * 120.00234 * 179.97438 * 10 9 8 12 12 O 1.21587 * 120.00183 * 0.02562 * 11 10 9 13 13 C 1.47641 * 119.99862 * 179.97438 * 11 10 9 14 14 C 1.40012 * 119.89582 * 359.73073 * 13 11 10 15 15 C 1.36324 * 120.10423 * 179.71537 * 14 13 11 16 16 C 1.40881 * 119.89296 * 0.55214 * 15 14 13 17 17 C 1.41112 * 120.10248 * 179.69634 * 16 15 14 18 18 H 1.08003 * 119.99716 * 155.08587 * 17 16 15 19 19 C 1.40224 * 119.99989 * 335.08604 * 17 16 15 20 20 N 1.30643 * 119.99860 * 342.20584 * 19 17 16 21 21 Si 1.86797 * 119.99674 * 162.20583 * 19 17 16 22 22 H 1.48500 * 109.47416 * 94.66325 * 21 19 17 23 23 H 1.48506 * 109.46974 * 214.66177 * 21 19 17 24 24 H 1.48498 * 109.47280 * 334.66014 * 21 19 17 25 25 C 1.40888 * 119.79101 * 359.72351 * 16 15 14 26 26 C 1.36315 * 119.89548 * 359.97438 * 25 16 15 27 27 C 1.38153 * 120.00102 * 0.24203 * 8 6 5 28 28 H 1.08999 * 109.47376 * 59.99378 * 1 2 3 29 29 H 1.09001 * 109.47490 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46482 * 299.99945 * 1 2 3 31 31 H 1.07998 * 119.99520 * 359.97288 * 4 3 2 32 32 H 1.07995 * 119.99915 * 179.97438 * 5 4 3 33 33 H 0.96703 * 113.99809 * 270.02050 * 7 6 5 34 34 H 1.08999 * 109.46784 * 165.00593 * 9 8 6 35 35 H 1.08994 * 109.47450 * 45.00871 * 9 8 6 36 36 H 0.97008 * 119.99469 * 0.02562 * 10 9 8 37 37 H 1.08005 * 119.94884 * 359.97438 * 14 13 11 38 38 H 1.08003 * 120.04677 * 180.25510 * 15 14 13 39 39 H 0.97003 * 119.99534 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.05002 * 179.97438 * 25 16 15 41 41 H 1.08000 * 119.94827 * 179.97438 * 26 25 16 42 42 H 1.07999 * 120.00454 * 179.71833 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2910 2.3750 0.0005 5 6 1.9181 3.6055 0.0011 6 6 3.3033 3.6781 0.0005 7 8 3.9208 4.8896 0.0016 8 6 4.0586 2.5149 -0.0011 9 6 5.5635 2.5938 -0.0022 10 7 6.0315 2.9775 -1.3364 11 6 7.3511 3.1112 -1.5750 12 8 8.1534 2.9129 -0.6832 13 6 7.8227 3.4974 -2.9197 14 6 6.8974 3.7188 -3.9469 15 6 7.3278 4.0812 -5.1886 16 6 8.7068 4.2216 -5.4405 17 6 9.1575 4.5903 -6.7258 18 1 10.1127 5.0806 -6.8430 19 6 8.3654 4.3200 -7.8509 20 7 7.4014 3.4414 -7.7752 21 14 8.6884 5.2162 -9.4576 22 1 9.5758 4.3904 -10.3154 23 1 7.4015 5.4528 -10.1599 24 1 9.3447 6.5180 -9.1751 25 6 9.6344 3.9921 -4.4051 26 6 9.1942 3.6361 -3.1651 27 6 3.4313 1.2840 -0.0072 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8901 31 1 0.2125 2.3185 0.0005 32 1 1.3299 4.5113 0.0011 33 1 4.0987 5.2411 -0.8815 34 1 5.9784 1.6212 0.2625 35 1 5.8889 3.3377 0.7248 36 1 5.3914 3.1362 -2.0478 37 1 5.8406 3.6063 -3.7541 38 1 6.6129 4.2557 -5.9792 39 1 6.8532 3.2548 -8.5534 40 1 10.6925 4.0981 -4.5937 41 1 9.9045 3.4596 -2.3710 42 1 4.0194 0.3782 -0.0131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759618009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:50 Heat of formation + Delta-G solvation = -97.108035 kcal Electronic energy + Delta-G solvation = -26198.253918 eV Core-core repulsion = 22300.375521 eV Total energy + Delta-G solvation = -3897.878397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.51661 -40.67476 -39.53942 -38.84039 -36.93949 -35.76584 -35.66123 -32.84654 -31.78355 -31.28738 -30.46774 -28.19594 -27.90190 -26.55214 -23.75406 -23.61054 -22.81465 -22.21886 -21.29964 -19.39044 -19.30681 -19.02964 -18.15475 -17.68814 -17.31970 -16.89286 -16.61476 -16.26697 -16.00059 -15.75494 -15.53175 -15.24797 -15.07373 -14.94658 -14.45639 -14.25874 -13.97652 -13.77503 -13.68776 -13.42882 -13.28916 -13.17837 -13.02192 -12.83716 -12.62673 -12.35799 -12.35254 -11.84957 -11.77389 -11.38551 -11.35166 -11.11186 -10.81116 -10.14467 -10.01122 -9.56476 -9.39683 -9.07201 -8.78901 -6.47337 0.05853 0.25840 0.44804 1.16047 1.39335 1.42953 1.55559 2.12394 2.18852 2.21727 2.36823 2.71783 2.79309 3.29956 3.54682 3.69865 3.75437 4.03493 4.15897 4.27895 4.29946 4.32054 4.42393 4.45764 4.45868 4.63862 4.70468 4.76379 4.91359 4.93088 5.03802 5.05456 5.16707 5.22691 5.30594 5.38074 5.48895 5.54081 5.59910 5.82749 5.94910 6.00286 6.23708 6.36217 6.54657 6.67675 6.78035 6.79142 6.89727 7.42139 8.16422 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014276 B = 0.002624 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.801854 B =10666.377146 C =11649.094316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.110 3.890 4 C -0.178 4.178 5 C -0.105 4.105 6 C 0.077 3.923 7 O -0.504 6.504 8 C -0.098 4.098 9 C 0.174 3.826 10 N -0.716 5.716 11 C 0.573 3.427 12 O -0.605 6.605 13 C -0.291 4.291 14 C -0.051 4.051 15 C -0.197 4.197 16 C 0.102 3.898 17 C -0.473 4.473 18 H 0.085 0.915 19 C 0.039 3.961 20 N -0.798 5.798 21 Si 0.986 3.014 22 H -0.262 1.262 23 H -0.261 1.261 24 H -0.258 1.258 25 C -0.253 4.253 26 C -0.033 4.033 27 C -0.130 4.130 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.402 0.598 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.406 0.594 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.297 0.703 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.352 -1.856 7.871 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.065 3.935 4 C -0.197 4.197 5 C -0.123 4.123 6 C 0.032 3.968 7 O -0.316 6.316 8 C -0.099 4.099 9 C 0.051 3.949 10 N -0.368 5.368 11 C 0.367 3.633 12 O -0.490 6.490 13 C -0.295 4.295 14 C -0.070 4.070 15 C -0.216 4.216 16 C 0.098 3.902 17 C -0.500 4.500 18 H 0.103 0.897 19 C -0.180 4.180 20 N -0.421 5.421 21 Si 0.806 3.194 22 H -0.187 1.187 23 H -0.185 1.185 24 H -0.181 1.181 25 C -0.272 4.272 26 C -0.052 4.052 27 C -0.150 4.150 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.180 0.820 32 H 0.173 0.827 33 H 0.259 0.741 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.242 0.758 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.957 -2.392 8.991 20.224 hybrid contribution 0.064 0.345 -1.379 1.423 sum -17.893 -2.047 7.612 19.552 Atomic orbital electron populations 1.23390 0.76169 1.05694 1.02530 1.86087 1.23693 1.26487 1.88664 1.19051 0.91952 0.85218 0.97295 1.21458 1.01596 0.90845 1.05792 1.21449 0.93053 0.99047 0.98738 1.18368 0.90776 0.84431 1.03245 1.84807 1.79974 1.31927 1.34865 1.19875 0.94468 0.92902 1.02681 1.19905 0.89270 1.00803 0.84936 1.45687 1.06603 1.71679 1.12850 1.18411 0.81922 0.75147 0.87789 1.90624 1.55588 1.54878 1.47864 1.19130 0.94309 1.22697 0.93397 1.20691 0.97726 0.96257 0.92345 1.21003 0.95705 1.08559 0.96325 1.18139 0.92482 0.86465 0.93083 1.20108 1.05056 1.33363 0.91505 0.89726 1.26909 0.92973 0.93470 1.04692 1.69762 1.15173 1.23346 1.33820 0.85120 0.79335 0.79332 0.75609 1.18696 1.18509 1.18117 1.20855 0.98407 1.13463 0.94511 1.20515 0.94522 0.94515 0.95696 1.20317 0.92300 0.97603 1.04753 0.91439 0.86526 0.91259 0.82039 0.82697 0.74062 0.91460 0.91388 0.75761 0.85933 0.86784 0.89180 0.87855 0.88003 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.32 10.50 -93.27 -0.98 -7.30 16 3 C 0.11 2.22 6.69 22.49 0.15 2.37 16 4 C -0.18 -2.83 9.03 22.36 0.20 -2.63 16 5 C -0.10 -1.81 9.98 22.35 0.22 -1.59 16 6 C 0.08 1.70 6.68 22.49 0.15 1.85 16 7 O -0.50 -11.40 12.83 -93.31 -1.20 -12.60 16 8 C -0.10 -2.40 5.26 -19.78 -0.10 -2.50 16 9 C 0.17 5.12 5.41 85.63 0.46 5.59 16 10 N -0.72 -23.28 5.50 -469.91 -2.58 -25.86 16 11 C 0.57 24.23 7.76 86.73 0.67 24.90 16 12 O -0.61 -29.30 16.32 -3.99 -0.07 -29.37 16 13 C -0.29 -13.18 5.89 -19.93 -0.12 -13.30 16 14 C -0.05 -2.20 9.47 22.25 0.21 -1.99 16 15 C -0.20 -9.55 8.63 22.47 0.19 -9.36 16 16 C 0.10 5.24 5.57 -21.28 -0.12 5.12 16 17 C -0.47 -23.72 9.04 23.46 0.21 -23.51 16 18 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 19 C 0.04 1.77 5.13 85.35 0.44 2.21 16 20 N -0.80 -37.64 10.97 21.87 0.24 -37.40 16 21 Si 0.99 34.37 29.60 68.60 2.03 36.40 16 22 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 23 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 24 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 25 C -0.25 -12.55 9.73 22.47 0.22 -12.33 16 26 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 27 C -0.13 -3.02 9.60 22.36 0.21 -2.81 16 28 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 29 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.46 7.66 -2.38 -0.02 0.44 16 31 H 0.16 1.53 6.29 -2.91 -0.02 1.51 16 32 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.40 6.69 9.06 -74.06 -0.67 6.02 16 34 H 0.07 2.04 7.95 -2.39 -0.02 2.02 16 35 H 0.07 2.18 8.00 -2.39 -0.02 2.16 16 36 H 0.41 11.47 6.47 -92.70 -0.60 10.87 16 37 H 0.12 4.25 6.37 -2.91 -0.02 4.23 16 38 H 0.11 5.60 6.17 -2.91 -0.02 5.58 16 39 H 0.30 12.41 8.29 -92.71 -0.77 11.65 16 40 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 41 H 0.10 4.79 7.63 -2.91 -0.02 4.77 16 42 H 0.13 3.08 8.00 -2.91 -0.02 3.05 16 Total: -1.00 -65.80 361.98 1.60 -64.20 By element: Atomic # 1 Polarization: 40.21 SS G_CDS: -0.18 Total: 40.03 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 4.33 Total: -28.10 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -2.34 Total: -63.26 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -2.24 Total: -49.26 kcal Atomic # 14 Polarization: 34.37 SS G_CDS: 2.03 Total: 36.40 kcal Total: -65.80 1.60 -64.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759618009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.910 kcal (2) G-P(sol) polarization free energy of solvation -65.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds