Wall clock time and date at job start Tue Mar 31 2020 14:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36003 * 117.00208 * 2 1 4 4 C 1.38691 * 120.03404 * 359.97438 * 3 2 1 5 5 C 1.38232 * 120.11909 * 180.02562 * 4 3 2 6 6 C 1.38208 * 120.20285 * 359.96206 * 5 4 3 7 7 C 1.38809 * 120.06871 * 0.04026 * 6 5 4 8 8 N 1.40131 * 120.05883 * 180.25500 * 7 6 5 9 9 C 1.34777 * 120.00132 * 19.42960 * 8 7 6 10 10 O 1.21297 * 120.00125 * 5.51227 * 9 8 7 11 11 C 1.50701 * 120.00309 * 185.51964 * 9 8 7 12 12 C 1.50694 * 109.47471 * 179.97438 * 11 9 8 13 13 C 1.37637 * 120.12649 * 264.99908 * 12 11 9 14 14 C 1.38614 * 120.24725 * 179.97438 * 13 12 11 15 15 C 1.38657 * 120.50490 * 0.02562 * 14 13 12 16 16 C 1.37599 * 120.24643 * 0.02694 * 15 14 13 17 17 C 1.40700 * 120.12798 * 84.72061 * 12 11 9 18 18 C 1.41395 * 120.24382 * 359.97438 * 17 12 11 19 19 H 1.07999 * 120.00160 * 330.62036 * 18 17 12 20 20 C 1.39950 * 119.99678 * 150.62041 * 18 17 12 21 21 N 1.30824 * 120.00134 * 348.61522 * 20 18 17 22 22 Si 1.86802 * 119.99707 * 168.61684 * 20 18 17 23 23 H 1.48504 * 109.47002 * 89.99777 * 22 20 18 24 24 H 1.48498 * 109.47289 * 209.99970 * 22 20 18 25 25 H 1.48502 * 109.47339 * 330.00160 * 22 20 18 26 26 C 1.38945 * 120.04250 * 180.02562 * 3 2 1 27 27 O 1.36085 * 120.09384 * 359.97438 * 26 3 2 28 28 H 1.08995 * 109.47170 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46971 * 300.00286 * 1 2 3 30 30 H 1.08998 * 109.46870 * 59.99707 * 1 2 3 31 31 H 1.07996 * 119.94259 * 0.02943 * 4 3 2 32 32 H 1.08004 * 119.90245 * 180.02562 * 5 4 3 33 33 H 1.07992 * 119.97010 * 180.02562 * 6 5 4 34 34 H 0.97002 * 120.00371 * 199.42393 * 8 7 6 35 35 H 1.09007 * 109.46595 * 299.99469 * 11 9 8 36 36 H 1.09001 * 109.47203 * 59.99304 * 11 9 8 37 37 H 1.08002 * 119.87569 * 359.97438 * 13 12 11 38 38 H 1.08004 * 119.74764 * 179.97438 * 14 13 12 39 39 H 1.07997 * 119.87683 * 179.97438 * 15 14 13 40 40 H 1.07998 * 120.12852 * 179.97438 * 16 15 14 41 41 H 0.96998 * 119.99677 * 180.02562 * 21 20 18 42 42 H 0.96700 * 113.99569 * 269.98283 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2918 2.3754 -0.0005 5 6 1.9176 3.6080 -0.0011 6 6 3.2974 3.6872 -0.0003 7 6 4.0606 2.5277 0.0002 8 7 5.4596 2.6083 0.0064 9 6 6.0674 3.7450 0.4000 10 8 5.4094 4.6625 0.8432 11 6 7.5647 3.8762 0.2894 12 6 7.9886 5.2324 0.7913 13 6 8.1624 6.2728 -0.0929 14 6 8.5518 7.5215 0.3661 15 6 8.7711 7.7375 1.7181 16 6 8.6044 6.7116 2.6199 17 6 8.2026 5.4414 2.1661 18 6 8.0209 4.3817 3.0844 19 1 7.3067 3.5998 2.8722 20 6 8.7665 4.3461 4.2681 21 7 9.7809 5.1568 4.4270 22 14 8.3134 3.1408 5.6214 23 1 9.0458 1.8656 5.4142 24 1 8.6828 3.7152 6.9400 25 1 6.8513 2.8832 5.5858 26 6 3.4340 1.2855 -0.0005 27 8 4.1778 0.1459 -0.0005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2134 2.3185 -0.0005 32 1 1.3265 4.5119 -0.0011 33 1 3.7824 4.6521 -0.0003 34 1 5.9906 1.8459 -0.2725 35 1 8.0425 3.1010 0.8886 36 1 7.8631 3.7653 -0.7531 37 1 7.9948 6.1158 -1.1482 38 1 8.6862 8.3321 -0.3348 39 1 9.0746 8.7143 2.0645 40 1 8.7761 6.8819 3.6724 41 1 10.2979 5.1318 5.2473 42 1 4.3933 -0.1830 0.8829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779067405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:06 Heat of formation + Delta-G solvation = -84.634620 kcal Electronic energy + Delta-G solvation = -27108.380722 eV Core-core repulsion = 23211.043213 eV Total energy + Delta-G solvation = -3897.337509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.92712 -40.74459 -39.37064 -38.60655 -37.37104 -35.50100 -35.46558 -33.51861 -31.34999 -30.69168 -30.47420 -28.43999 -27.96946 -26.84079 -23.91634 -23.55441 -22.80699 -21.93188 -21.01204 -19.79959 -19.07381 -18.84430 -18.38283 -17.36783 -17.13920 -16.98179 -16.66723 -16.44459 -16.21158 -16.05572 -15.45976 -15.29325 -15.08776 -14.94222 -14.77526 -14.37030 -13.61016 -13.53973 -13.41996 -13.38055 -13.14609 -12.88863 -12.77119 -12.73197 -12.48598 -12.34416 -12.16080 -12.12100 -11.83255 -11.37852 -11.32989 -11.22312 -11.05057 -10.58462 -9.23381 -9.20006 -9.15793 -9.00759 -8.55986 -6.31543 0.11314 0.34650 0.97872 1.12535 1.36030 1.47023 1.52208 1.68316 1.91521 2.20312 2.48777 2.65265 2.80912 3.21296 3.67769 3.91674 4.00682 4.10118 4.22864 4.38393 4.39522 4.42262 4.45674 4.51216 4.59850 4.62436 4.71357 4.76916 4.79064 5.05128 5.12166 5.17612 5.20390 5.25594 5.37234 5.50918 5.54412 5.77955 5.81371 6.03379 6.16358 6.21276 6.26266 6.42066 6.46644 6.74142 6.77807 6.99763 7.10798 7.20013 8.40156 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.003587 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.651058 B = 7803.133659 C = 9069.324923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.117 3.883 4 C -0.215 4.215 5 C -0.064 4.064 6 C -0.190 4.190 7 C 0.159 3.841 8 N -0.659 5.659 9 C 0.518 3.482 10 O -0.537 6.537 11 C -0.067 4.067 12 C -0.185 4.185 13 C -0.091 4.091 14 C -0.237 4.237 15 C -0.118 4.118 16 C -0.187 4.187 17 C 0.097 3.903 18 C -0.484 4.484 19 H 0.070 0.930 20 C 0.035 3.965 21 N -0.832 5.832 22 Si 0.971 3.029 23 H -0.255 1.255 24 H -0.270 1.270 25 H -0.269 1.269 26 C 0.021 3.979 27 O -0.488 6.488 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.137 0.863 34 H 0.426 0.574 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.284 0.716 42 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 -10.553 -7.648 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.070 3.930 4 C -0.234 4.234 5 C -0.083 4.083 6 C -0.210 4.210 7 C 0.062 3.938 8 N -0.304 5.304 9 C 0.308 3.692 10 O -0.412 6.412 11 C -0.107 4.107 12 C -0.187 4.187 13 C -0.109 4.109 14 C -0.256 4.256 15 C -0.136 4.136 16 C -0.207 4.207 17 C 0.095 3.905 18 C -0.514 4.514 19 H 0.088 0.912 20 C -0.178 4.178 21 N -0.459 5.459 22 Si 0.793 3.207 23 H -0.180 1.180 24 H -0.194 1.194 25 H -0.193 1.193 26 C -0.027 4.027 27 O -0.298 6.298 28 H 0.138 0.862 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.179 0.821 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.264 0.736 35 H 0.121 0.879 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -14.402 -9.971 -7.784 19.168 hybrid contribution 0.290 -0.375 1.332 1.414 sum -14.111 -10.345 -6.451 18.649 Atomic orbital electron populations 1.23405 0.76252 1.05676 1.02498 1.86103 1.23512 1.25732 1.88449 1.19164 0.90856 0.85773 0.97159 1.21398 1.01401 0.90854 1.09754 1.21156 0.93231 0.98513 0.95402 1.21589 0.94864 0.98511 1.06052 1.18091 0.83758 0.93136 0.98791 1.43528 1.04381 1.17183 1.65345 1.21462 0.91546 0.81009 0.75156 1.90598 1.66712 1.40665 1.43252 1.20305 0.89156 0.97494 1.03711 1.19500 1.11314 0.94890 0.92997 1.20758 0.98914 0.92984 0.98291 1.20748 1.12054 0.97739 0.95082 1.20972 1.00580 0.97844 0.94254 1.21332 1.07274 0.93488 0.98594 1.17724 0.88639 0.92350 0.91790 1.19589 1.20348 1.08225 1.03212 0.91234 1.26623 0.93086 0.97571 1.00533 1.69864 1.14264 1.34799 1.26996 0.85370 0.79300 0.78838 0.77236 1.17953 1.19414 1.19324 1.17216 0.87290 0.84956 1.13269 1.84846 1.71655 1.38693 1.34605 0.86240 0.91529 0.91421 0.82062 0.83073 0.84573 0.73553 0.87853 0.86332 0.86374 0.86594 0.87672 0.88536 0.90496 0.74688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -7.10 10.28 -79.62 -0.82 -7.92 16 3 C 0.12 2.91 6.70 22.55 0.15 3.07 16 4 C -0.21 -4.63 9.04 22.38 0.20 -4.43 16 5 C -0.06 -1.61 10.03 22.26 0.22 -1.38 16 6 C -0.19 -6.10 8.78 22.40 0.20 -5.90 16 7 C 0.16 4.96 6.52 38.17 0.25 5.21 16 8 N -0.66 -20.02 5.33 -303.18 -1.62 -21.64 16 9 C 0.52 19.57 7.27 87.66 0.64 20.21 16 10 O -0.54 -24.74 12.93 -3.08 -0.04 -24.78 16 11 C -0.07 -2.48 5.19 29.10 0.15 -2.33 16 12 C -0.19 -8.66 4.43 -19.41 -0.09 -8.75 16 13 C -0.09 -4.00 9.66 22.22 0.21 -3.78 16 14 C -0.24 -10.56 10.05 22.46 0.23 -10.34 16 15 C -0.12 -5.74 10.02 22.22 0.22 -5.52 16 16 C -0.19 -10.26 8.66 22.73 0.20 -10.06 16 17 C 0.10 5.24 5.54 -21.29 -0.12 5.12 16 18 C -0.48 -25.82 8.07 23.46 0.19 -25.63 16 19 H 0.07 3.61 6.77 -2.91 -0.02 3.59 16 20 C 0.04 1.80 5.24 85.26 0.45 2.25 16 21 N -0.83 -44.09 10.90 21.83 0.24 -43.85 16 22 Si 0.97 39.03 29.57 68.60 2.03 41.06 16 23 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 24 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 26 C 0.02 0.58 6.73 22.66 0.15 0.73 16 27 O -0.49 -11.84 12.64 -80.56 -1.02 -12.86 16 28 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.66 7.66 -2.38 -0.02 0.64 16 30 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 31 H 0.16 2.32 6.29 -2.91 -0.02 2.30 16 32 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 33 H 0.14 5.15 5.41 -2.91 -0.02 5.13 16 34 H 0.43 10.29 8.24 -92.71 -0.76 9.53 16 35 H 0.10 3.77 7.14 -2.38 -0.02 3.75 16 36 H 0.12 3.43 8.05 -2.39 -0.02 3.42 16 37 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 38 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.10 5.57 6.27 -2.91 -0.02 5.55 16 41 H 0.28 13.74 8.30 -92.71 -0.77 12.97 16 42 H 0.40 6.85 9.07 -74.06 -0.67 6.18 16 Total: -1.00 -71.15 355.94 2.80 -68.35 By element: Atomic # 1 Polarization: 42.21 SS G_CDS: -0.34 Total: 41.87 kcal Atomic # 6 Polarization: -44.60 SS G_CDS: 4.37 Total: -40.24 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -1.38 Total: -65.49 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.88 Total: -45.56 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -71.15 2.80 -68.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779067405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.281 kcal (2) G-P(sol) polarization free energy of solvation -71.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds