Wall clock time and date at job start Tue Mar 31 2020 14:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35972 * 116.99842 * 2 1 4 4 C 1.38732 * 119.96625 * 0.02562 * 3 2 1 5 5 C 1.38169 * 120.10565 * 179.76519 * 4 3 2 6 6 C 1.38700 * 120.03860 * 0.46469 * 5 4 3 7 7 N 1.40302 * 120.03231 * 179.79092 * 6 5 4 8 8 C 1.34769 * 120.00434 * 27.82173 * 7 6 5 9 9 O 1.21306 * 119.99802 * 355.52109 * 8 7 6 10 10 C 1.50701 * 120.00366 * 175.52686 * 8 7 6 11 11 C 1.50695 * 109.47499 * 180.02562 * 10 8 7 12 12 C 1.37645 * 120.12335 * 264.99708 * 11 10 8 13 13 C 1.38618 * 120.24381 * 180.29643 * 12 11 10 14 14 C 1.38652 * 120.50295 * 359.43959 * 13 12 11 15 15 C 1.37599 * 120.24879 * 0.56326 * 14 13 12 16 16 C 1.40693 * 120.13269 * 85.01337 * 11 10 8 17 17 C 1.41400 * 120.24180 * 359.96481 * 16 11 10 18 18 H 1.08003 * 119.99760 * 331.43353 * 17 16 11 19 19 C 1.39946 * 120.00235 * 151.43917 * 17 16 11 20 20 N 1.30825 * 119.99677 * 348.11363 * 19 17 16 21 21 Si 1.86795 * 120.00045 * 168.11476 * 19 17 16 22 22 H 1.48497 * 109.47114 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47177 * 120.00162 * 21 19 17 24 24 H 1.48511 * 109.46953 * 240.00003 * 21 19 17 25 25 C 1.39285 * 119.93054 * 359.51311 * 6 5 4 26 26 O 1.35961 * 120.05548 * 180.27036 * 25 6 5 27 27 C 1.38520 * 119.89371 * 0.25304 * 25 6 5 28 28 H 1.09001 * 109.46914 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47562 * 300.00364 * 1 2 3 30 30 H 1.09004 * 109.47243 * 60.00110 * 1 2 3 31 31 H 1.08001 * 119.94730 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.97831 * 180.23163 * 5 4 3 33 33 H 0.97007 * 119.99268 * 207.82416 * 7 6 5 34 34 H 1.09000 * 109.47179 * 59.99295 * 10 8 7 35 35 H 1.09008 * 109.46838 * 299.99864 * 10 8 7 36 36 H 1.07998 * 119.87615 * 0.02562 * 12 11 10 37 37 H 1.08002 * 119.74553 * 179.70353 * 13 12 11 38 38 H 1.08000 * 119.87425 * 180.30279 * 14 13 12 39 39 H 1.08003 * 120.13010 * 179.74774 * 15 14 13 40 40 H 0.96998 * 119.99544 * 179.97438 * 20 19 17 41 41 H 0.96706 * 113.99775 * 90.00152 * 26 25 6 42 42 H 1.07991 * 120.01919 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2899 2.3746 0.0005 5 6 1.9142 3.6072 0.0054 6 6 3.2990 3.6842 0.0001 7 7 3.9327 4.9359 0.0006 8 6 3.3184 6.0020 0.5504 9 8 2.1856 5.8987 0.9717 10 6 4.0388 7.3226 0.6417 11 6 3.1392 8.3417 1.2923 12 6 2.3770 9.1855 0.5167 13 6 1.5534 10.1280 1.1124 14 6 1.4782 10.2244 2.4935 15 6 2.2312 9.3912 3.2886 16 6 3.0754 8.4344 2.6947 17 6 3.8535 7.5725 3.5016 18 1 4.1232 6.5913 3.1396 19 6 4.2739 7.9907 4.7692 20 7 4.1530 9.2460 5.1173 21 14 5.0078 6.7567 5.9641 22 1 5.0335 5.4124 5.3337 23 1 6.3918 7.1674 6.3121 24 1 4.1808 6.7091 7.1967 25 6 4.0599 2.5175 0.0000 26 8 5.4176 2.5900 0.0004 27 6 3.4312 1.2832 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2115 2.3164 0.0014 32 1 1.3234 4.5113 0.0096 33 1 4.8131 5.0339 -0.3948 34 1 4.3067 7.6603 -0.3594 35 1 4.9429 7.2028 1.2388 36 1 2.4243 9.1161 -0.5600 37 1 0.9624 10.7893 0.4961 38 1 0.8294 10.9591 2.9470 39 1 2.1743 9.4707 4.3642 40 1 4.4440 9.5358 5.9960 41 1 5.8101 2.6108 0.8839 42 1 4.0191 0.3774 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785424895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:16 Heat of formation + Delta-G solvation = -66.863915 kcal Electronic energy + Delta-G solvation = -27075.762617 eV Core-core repulsion = 23179.195703 eV Total energy + Delta-G solvation = -3896.566914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.68754 -39.43076 -38.35463 -37.36851 -35.90392 -34.06310 -33.62112 -31.84863 -30.43980 -29.48317 -28.81587 -27.43026 -26.42162 -24.99642 -23.16449 -22.08729 -20.95117 -20.52733 -19.43084 -18.91311 -17.54892 -17.11506 -16.99400 -16.79045 -15.96659 -15.75380 -15.45984 -14.83282 -14.71056 -14.57456 -14.36579 -13.87767 -13.58604 -13.39128 -13.30425 -12.75304 -12.60838 -12.51438 -12.34712 -11.79884 -11.58702 -11.48320 -11.40514 -11.18376 -11.05190 -11.03088 -10.87489 -10.69212 -10.39681 -9.79993 -9.52038 -9.39004 -9.22386 -9.15726 -8.79038 -7.58029 -7.34527 -7.29041 -6.72309 -4.38418 1.16087 1.39623 2.74458 2.91342 3.06161 3.08427 3.10518 3.12103 3.23610 3.48133 3.68890 3.92557 4.26181 4.65872 4.79183 4.96236 4.99470 5.00955 5.23464 5.31575 5.39069 5.54358 5.71993 5.80408 5.92062 5.96280 6.04204 6.24933 6.30938 6.36629 6.38201 6.47360 6.49206 6.76434 6.85927 7.07749 7.26754 7.28036 7.39421 7.56616 7.60785 7.73981 7.89357 8.04713 8.10048 8.29069 8.60716 8.65455 8.89836 8.98564 10.21681 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.003674 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.463908 B = 7618.276770 C = 8549.759149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.114 3.886 4 C -0.193 4.193 5 C -0.081 4.081 6 C 0.106 3.894 7 N -0.677 5.677 8 C 0.514 3.486 9 O -0.502 6.502 10 C -0.069 4.069 11 C -0.181 4.181 12 C -0.082 4.082 13 C -0.236 4.236 14 C -0.108 4.108 15 C -0.154 4.154 16 C 0.129 3.871 17 C -0.457 4.457 18 H 0.073 0.927 19 C 0.075 3.925 20 N -0.800 5.800 21 Si 0.904 3.096 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.272 1.272 25 C 0.105 3.895 26 O -0.493 6.493 27 C -0.159 4.159 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.131 0.869 32 H 0.160 0.840 33 H 0.411 0.589 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.279 0.721 41 H 0.391 0.609 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 -12.981 -7.918 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.068 3.932 4 C -0.212 4.212 5 C -0.101 4.101 6 C 0.010 3.990 7 N -0.323 5.323 8 C 0.303 3.697 9 O -0.375 6.375 10 C -0.108 4.108 11 C -0.183 4.183 12 C -0.101 4.101 13 C -0.255 4.255 14 C -0.126 4.126 15 C -0.173 4.173 16 C 0.127 3.873 17 C -0.488 4.488 18 H 0.091 0.909 19 C -0.141 4.141 20 N -0.426 5.426 21 Si 0.729 3.271 22 H -0.187 1.187 23 H -0.200 1.200 24 H -0.198 1.198 25 C 0.058 3.942 26 O -0.303 6.303 27 C -0.179 4.179 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.178 0.822 33 H 0.247 0.753 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.248 0.752 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.073 -12.995 -7.986 15.291 hybrid contribution 0.640 -0.324 1.008 1.237 sum -0.433 -13.320 -6.979 15.043 Atomic orbital electron populations 1.23040 0.78446 1.03686 1.01568 1.86034 1.21300 1.26867 1.89179 1.18700 0.91679 0.84211 0.98595 1.21224 1.00225 0.91682 1.08057 1.21410 0.92909 0.98994 0.96814 1.18150 0.92129 0.84967 1.03776 1.43749 1.22100 1.06716 1.59744 1.21560 0.87179 0.85489 0.75472 1.90610 1.18164 1.83737 1.44989 1.20279 0.99507 0.89864 1.01186 1.19044 1.04538 1.01033 0.93704 1.20314 0.96842 0.96244 0.96657 1.20329 1.06661 1.04081 0.94438 1.20703 0.99300 0.98924 0.93719 1.21337 0.97691 0.98870 0.99451 1.17346 0.89155 0.90821 0.89994 1.19487 1.28861 1.01331 0.99077 0.90900 1.25860 0.94495 0.95300 0.98463 1.69803 1.36793 1.15405 1.20578 0.86322 0.78907 0.81491 0.80352 1.18659 1.19970 1.19764 1.17720 0.82859 0.90223 1.03418 1.84784 1.15656 1.96009 1.33841 1.20282 0.91759 0.97577 1.08270 0.88420 0.92515 0.92649 0.85101 0.82246 0.75322 0.90167 0.88122 0.89673 0.89601 0.89527 0.86388 0.91048 0.75240 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.84 10.50 -19.65 -0.21 -4.05 16 3 C 0.11 1.51 6.68 -39.24 -0.26 1.25 16 4 C -0.19 -2.62 9.03 -39.42 -0.36 -2.98 16 5 C -0.08 -1.29 8.77 -39.44 -0.35 -1.63 16 6 C 0.11 1.63 6.44 -83.42 -0.54 1.09 16 7 N -0.68 -10.20 5.26 -9.71 -0.05 -10.26 16 8 C 0.51 9.62 7.33 -10.99 -0.08 9.54 16 9 O -0.50 -11.25 13.06 5.54 0.07 -11.18 16 10 C -0.07 -1.29 5.19 -29.04 -0.15 -1.44 16 11 C -0.18 -4.22 4.43 -103.91 -0.46 -4.68 16 12 C -0.08 -1.84 9.66 -39.66 -0.38 -2.23 16 13 C -0.24 -5.37 10.05 -39.29 -0.39 -5.76 16 14 C -0.11 -2.59 10.02 -39.66 -0.40 -2.99 16 15 C -0.15 -4.06 8.66 -38.87 -0.34 -4.39 16 16 C 0.13 3.38 5.55 -106.82 -0.59 2.78 16 17 C -0.46 -11.81 8.08 -37.74 -0.31 -12.11 16 18 H 0.07 1.84 6.75 -52.48 -0.35 1.48 16 19 C 0.08 1.87 5.23 -17.34 -0.09 1.78 16 20 N -0.80 -20.44 10.89 55.55 0.60 -19.83 16 21 Si 0.90 18.68 29.58 -169.99 -5.03 13.65 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 C 0.11 1.42 6.72 -39.09 -0.26 1.16 16 26 O -0.49 -5.60 12.96 -19.62 -0.25 -5.86 16 27 C -0.16 -2.08 9.92 -39.32 -0.39 -2.47 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.13 1.49 6.28 -52.49 -0.33 1.16 16 32 H 0.16 2.84 5.67 -52.49 -0.30 2.54 16 33 H 0.41 5.00 8.41 -40.82 -0.34 4.66 16 34 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 35 H 0.10 1.85 7.10 -51.92 -0.37 1.48 16 36 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.12 3.21 6.25 -52.48 -0.33 2.88 16 40 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 41 H 0.39 3.04 9.06 45.56 0.41 3.45 16 42 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 356.72 15.07 5.38 5.38 Total: -1.00 -31.47 356.72 -7.91 -39.38 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -4.07 Total: 14.63 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -4.35 Total: -21.86 kcal Atomic # 7 Polarization: -30.64 SS G_CDS: 0.55 Total: -30.09 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.39 Total: -21.08 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.47 -7.91 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785424895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.486 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds