Wall clock time and date at job start Tue Mar 31 2020 14:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35972 * 116.99842 * 2 1 4 4 C 1.38732 * 119.96625 * 0.02562 * 3 2 1 5 5 C 1.38169 * 120.10565 * 179.76519 * 4 3 2 6 6 C 1.38700 * 120.03860 * 0.46469 * 5 4 3 7 7 N 1.40302 * 120.03231 * 179.79092 * 6 5 4 8 8 C 1.34769 * 120.00434 * 27.82173 * 7 6 5 9 9 O 1.21306 * 119.99802 * 355.52109 * 8 7 6 10 10 C 1.50701 * 120.00366 * 175.52686 * 8 7 6 11 11 C 1.50695 * 109.47499 * 180.02562 * 10 8 7 12 12 C 1.37645 * 120.12335 * 264.99708 * 11 10 8 13 13 C 1.38618 * 120.24381 * 180.29643 * 12 11 10 14 14 C 1.38652 * 120.50295 * 359.43959 * 13 12 11 15 15 C 1.37599 * 120.24879 * 0.56326 * 14 13 12 16 16 C 1.40693 * 120.13269 * 85.01337 * 11 10 8 17 17 C 1.41400 * 120.24180 * 359.96481 * 16 11 10 18 18 H 1.08003 * 119.99760 * 331.43353 * 17 16 11 19 19 C 1.39946 * 120.00235 * 151.43917 * 17 16 11 20 20 N 1.30825 * 119.99677 * 348.11363 * 19 17 16 21 21 Si 1.86795 * 120.00045 * 168.11476 * 19 17 16 22 22 H 1.48497 * 109.47114 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47177 * 120.00162 * 21 19 17 24 24 H 1.48511 * 109.46953 * 240.00003 * 21 19 17 25 25 C 1.39285 * 119.93054 * 359.51311 * 6 5 4 26 26 O 1.35961 * 120.05548 * 180.27036 * 25 6 5 27 27 C 1.38520 * 119.89371 * 0.25304 * 25 6 5 28 28 H 1.09001 * 109.46914 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47562 * 300.00364 * 1 2 3 30 30 H 1.09004 * 109.47243 * 60.00110 * 1 2 3 31 31 H 1.08001 * 119.94730 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.97831 * 180.23163 * 5 4 3 33 33 H 0.97007 * 119.99268 * 207.82416 * 7 6 5 34 34 H 1.09000 * 109.47179 * 59.99295 * 10 8 7 35 35 H 1.09008 * 109.46838 * 299.99864 * 10 8 7 36 36 H 1.07998 * 119.87615 * 0.02562 * 12 11 10 37 37 H 1.08002 * 119.74553 * 179.70353 * 13 12 11 38 38 H 1.08000 * 119.87425 * 180.30279 * 14 13 12 39 39 H 1.08003 * 120.13010 * 179.74774 * 15 14 13 40 40 H 0.96998 * 119.99544 * 179.97438 * 20 19 17 41 41 H 0.96706 * 113.99775 * 90.00152 * 26 25 6 42 42 H 1.07991 * 120.01919 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2899 2.3746 0.0005 5 6 1.9142 3.6072 0.0054 6 6 3.2990 3.6842 0.0001 7 7 3.9327 4.9359 0.0006 8 6 3.3184 6.0020 0.5504 9 8 2.1856 5.8987 0.9717 10 6 4.0388 7.3226 0.6417 11 6 3.1392 8.3417 1.2923 12 6 2.3770 9.1855 0.5167 13 6 1.5534 10.1280 1.1124 14 6 1.4782 10.2244 2.4935 15 6 2.2312 9.3912 3.2886 16 6 3.0754 8.4344 2.6947 17 6 3.8535 7.5725 3.5016 18 1 4.1232 6.5913 3.1396 19 6 4.2739 7.9907 4.7692 20 7 4.1530 9.2460 5.1173 21 14 5.0078 6.7567 5.9641 22 1 5.0335 5.4124 5.3337 23 1 6.3918 7.1674 6.3121 24 1 4.1808 6.7091 7.1967 25 6 4.0599 2.5175 0.0000 26 8 5.4176 2.5900 0.0004 27 6 3.4312 1.2832 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2115 2.3164 0.0014 32 1 1.3234 4.5113 0.0096 33 1 4.8131 5.0339 -0.3948 34 1 4.3067 7.6603 -0.3594 35 1 4.9429 7.2028 1.2388 36 1 2.4243 9.1161 -0.5600 37 1 0.9624 10.7893 0.4961 38 1 0.8294 10.9591 2.9470 39 1 2.1743 9.4707 4.3642 40 1 4.4440 9.5358 5.9960 41 1 5.8101 2.6108 0.8839 42 1 4.0191 0.3774 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785424895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:15 Heat of formation + Delta-G solvation = -87.487546 kcal Electronic energy + Delta-G solvation = -27076.656924 eV Core-core repulsion = 23179.195703 eV Total energy + Delta-G solvation = -3897.461221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.84070 -40.64817 -39.53683 -38.95515 -36.94576 -35.47719 -35.34121 -33.49229 -31.50578 -31.32453 -30.01334 -28.52364 -27.72456 -26.78524 -24.31609 -23.18271 -22.80300 -21.99115 -20.99152 -19.90785 -19.09482 -18.59963 -18.06337 -17.92200 -17.25614 -17.04655 -16.62680 -16.29344 -16.18914 -15.78468 -15.52360 -15.27647 -15.17643 -14.94888 -14.58665 -14.37530 -13.83562 -13.57118 -13.45379 -13.36892 -13.19691 -12.90112 -12.78071 -12.72501 -12.49752 -12.30394 -12.29477 -12.10673 -11.87224 -11.32720 -11.21055 -11.06066 -10.98144 -10.55927 -9.85601 -9.19933 -9.15863 -8.69061 -8.56023 -6.30948 0.11709 0.28336 0.98211 1.12892 1.36404 1.49169 1.51509 1.71379 2.14872 2.20401 2.28360 2.61762 2.80784 3.29612 3.69588 3.81164 3.97193 4.09142 4.23629 4.30980 4.39874 4.39983 4.46224 4.51514 4.60939 4.69851 4.72006 4.77129 4.80633 4.95900 5.06600 5.20954 5.22112 5.31069 5.35896 5.38034 5.54873 5.70997 5.78295 6.03808 6.16990 6.21625 6.36087 6.42387 6.52623 6.71445 6.74845 7.00172 7.11303 7.28182 8.40172 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.003674 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.463908 B = 7618.276770 C = 8549.759149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.118 3.882 4 C -0.197 4.197 5 C -0.099 4.099 6 C 0.079 3.921 7 N -0.659 5.659 8 C 0.517 3.483 9 O -0.547 6.547 10 C -0.067 4.067 11 C -0.184 4.184 12 C -0.092 4.092 13 C -0.238 4.238 14 C -0.119 4.119 15 C -0.189 4.189 16 C 0.097 3.903 17 C -0.482 4.482 18 H 0.070 0.930 19 C 0.035 3.965 20 N -0.832 5.832 21 Si 0.972 3.028 22 H -0.262 1.262 23 H -0.261 1.261 24 H -0.272 1.272 25 C 0.118 3.882 26 O -0.492 6.492 27 C -0.164 4.164 28 H 0.124 0.876 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.148 0.852 32 H 0.136 0.864 33 H 0.425 0.575 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.284 0.716 41 H 0.410 0.590 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 -14.869 -9.146 17.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.072 3.928 4 C -0.216 4.216 5 C -0.119 4.119 6 C -0.017 4.017 7 N -0.305 5.305 8 C 0.306 3.694 9 O -0.423 6.423 10 C -0.106 4.106 11 C -0.186 4.186 12 C -0.110 4.110 13 C -0.257 4.257 14 C -0.137 4.137 15 C -0.208 4.208 16 C 0.095 3.905 17 C -0.512 4.512 18 H 0.088 0.912 19 C -0.179 4.179 20 N -0.459 5.459 21 Si 0.794 3.206 22 H -0.185 1.185 23 H -0.185 1.185 24 H -0.197 1.197 25 C 0.071 3.929 26 O -0.304 6.304 27 C -0.183 4.183 28 H 0.142 0.858 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.165 0.835 32 H 0.153 0.847 33 H 0.264 0.736 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.269 0.731 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.201 -14.900 -9.236 17.532 hybrid contribution 0.305 0.208 1.274 1.327 sum 0.105 -14.692 -7.962 16.711 Atomic orbital electron populations 1.23355 0.76491 1.05703 1.02138 1.86037 1.23333 1.26033 1.88785 1.18820 0.91998 0.84544 0.97451 1.21349 1.01237 0.91110 1.07891 1.21296 0.93344 0.98986 0.98272 1.18311 0.92284 0.85364 1.05719 1.43412 1.22328 1.06044 1.58750 1.21413 0.86568 0.86142 0.75231 1.90610 1.20036 1.84474 1.47228 1.20290 0.98424 0.89103 1.02826 1.19510 1.04492 1.01576 0.93038 1.20759 0.96161 0.95630 0.98438 1.20738 1.06525 1.04290 0.94164 1.20964 0.99233 0.98931 0.94569 1.21336 0.99734 1.00940 0.98831 1.17725 0.89708 0.91367 0.91717 1.19627 1.29922 1.01348 1.00306 0.91161 1.26640 0.94669 0.96892 0.99685 1.69875 1.37792 1.16997 1.21259 0.85303 0.78550 0.78964 0.77783 1.18527 1.18544 1.19711 1.17670 0.83569 0.89645 1.02051 1.84741 1.14391 1.95874 1.35429 1.20542 0.91997 0.98039 1.07741 0.85779 0.92288 0.91733 0.83452 0.84676 0.73623 0.86429 0.87930 0.86384 0.86673 0.87767 0.88549 0.90522 0.73102 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.15 10.50 -93.23 -0.98 -8.13 16 3 C 0.12 2.94 6.68 22.49 0.15 3.09 16 4 C -0.20 -5.22 9.03 22.37 0.20 -5.02 16 5 C -0.10 -3.16 8.77 22.36 0.20 -2.96 16 6 C 0.08 2.36 6.44 38.15 0.25 2.60 16 7 N -0.66 -19.22 5.26 -303.02 -1.59 -20.81 16 8 C 0.52 19.22 7.33 87.66 0.64 19.86 16 9 O -0.55 -25.09 13.06 -3.11 -0.04 -25.13 16 10 C -0.07 -2.45 5.19 29.10 0.15 -2.29 16 11 C -0.18 -8.58 4.43 -19.41 -0.09 -8.67 16 12 C -0.09 -4.01 9.66 22.22 0.21 -3.79 16 13 C -0.24 -10.61 10.05 22.46 0.23 -10.38 16 14 C -0.12 -5.77 10.02 22.22 0.22 -5.55 16 15 C -0.19 -10.34 8.66 22.73 0.20 -10.15 16 16 C 0.10 5.22 5.55 -21.29 -0.12 5.10 16 17 C -0.48 -25.59 8.08 23.46 0.19 -25.40 16 18 H 0.07 3.63 6.75 -2.91 -0.02 3.61 16 19 C 0.03 1.75 5.23 85.26 0.45 2.20 16 20 N -0.83 -43.96 10.89 21.83 0.24 -43.72 16 21 Si 0.97 38.76 29.58 68.60 2.03 40.78 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 25 C 0.12 2.98 6.72 22.59 0.15 3.13 16 26 O -0.49 -9.91 12.96 -93.12 -1.21 -11.11 16 27 C -0.16 -3.92 9.92 22.44 0.22 -3.70 16 28 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 30 H 0.06 0.81 7.66 -2.38 -0.02 0.79 16 31 H 0.15 3.24 6.28 -2.91 -0.02 3.22 16 32 H 0.14 5.02 5.67 -2.91 -0.02 5.00 16 33 H 0.43 9.58 8.41 -92.70 -0.78 8.80 16 34 H 0.12 3.33 8.05 -2.39 -0.02 3.31 16 35 H 0.10 3.71 7.10 -2.38 -0.02 3.69 16 36 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 37 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.10 5.56 6.25 -2.91 -0.02 5.54 16 40 H 0.28 13.65 8.30 -92.71 -0.77 12.88 16 41 H 0.41 5.22 9.06 -74.05 -0.67 4.55 16 42 H 0.15 3.08 8.06 -2.92 -0.02 3.06 16 Total: -1.00 -70.28 356.72 2.45 -67.83 By element: Atomic # 1 Polarization: 41.22 SS G_CDS: -0.36 Total: 40.86 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 4.37 Total: -40.57 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -1.36 Total: -64.53 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -2.23 Total: -44.37 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.78 kcal Total: -70.28 2.45 -67.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785424895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.659 kcal (2) G-P(sol) polarization free energy of solvation -70.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds