Wall clock time and date at job start Tue Mar 31 2020 15:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99527 * 2 1 4 4 O 1.42895 * 109.47100 * 75.00554 * 3 2 1 5 5 C 1.35965 * 117.00607 * 74.99555 * 4 3 2 6 6 C 1.38727 * 119.98975 * 179.97438 * 5 4 3 7 7 C 1.38075 * 120.02037 * 180.02562 * 6 5 4 8 8 C 1.38868 * 119.98309 * 359.97438 * 7 6 5 9 9 N 1.40033 * 120.01350 * 179.97438 * 8 7 6 10 10 C 1.34784 * 119.99942 * 146.47678 * 9 8 7 11 11 O 1.21568 * 119.99739 * 354.66016 * 10 9 8 12 12 C 1.47853 * 119.99996 * 174.93706 * 10 9 8 13 13 C 1.39930 * 120.02862 * 359.72012 * 12 10 9 14 14 C 1.38323 * 120.35734 * 179.76330 * 13 12 10 15 15 C 1.37762 * 120.41035 * 0.51914 * 14 13 12 16 16 C 1.40748 * 120.04461 * 359.74265 * 15 14 13 17 17 C 1.41434 * 120.17674 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99861 * 331.54470 * 17 16 15 19 19 C 1.39931 * 120.00167 * 151.55382 * 17 16 15 20 20 N 1.30835 * 120.00091 * 349.00724 * 19 17 16 21 21 Si 1.86799 * 120.00262 * 169.01016 * 19 17 16 22 22 H 1.48500 * 109.47026 * 59.99884 * 21 19 17 23 23 H 1.48500 * 109.47178 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47178 * 299.99886 * 21 19 17 25 25 C 1.39007 * 120.02440 * 180.02562 * 12 10 9 26 26 C 1.38855 * 119.96620 * 0.27172 * 8 7 6 27 27 C 1.38087 * 119.98482 * 359.49018 * 26 8 7 28 28 H 1.08998 * 109.47134 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47234 * 299.99860 * 1 2 3 30 30 H 1.09005 * 109.46876 * 59.99740 * 1 2 3 31 31 H 1.08994 * 109.47685 * 314.99912 * 3 2 1 32 32 H 1.09001 * 109.46396 * 194.99740 * 3 2 1 33 33 H 1.08009 * 119.98609 * 0.02562 * 6 5 4 34 34 H 1.08005 * 120.01226 * 179.97438 * 7 6 5 35 35 H 0.97002 * 120.00440 * 326.47465 * 9 8 7 36 36 H 1.07996 * 119.81802 * 0.02781 * 13 12 10 37 37 H 1.07996 * 119.79858 * 180.23853 * 14 13 12 38 38 H 1.07998 * 119.97652 * 179.71834 * 15 14 13 39 39 H 0.96990 * 120.00096 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.20332 * 359.94936 * 25 12 10 41 41 H 1.08003 * 120.01122 * 179.72857 * 26 8 7 42 42 H 1.07998 * 119.99423 * 180.20208 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8824 1.3014 5 6 2.7192 1.4129 2.2673 6 6 2.6515 1.9298 3.5530 7 6 3.4982 1.4538 4.5343 8 6 4.4174 0.4571 4.2342 9 7 5.2768 -0.0257 5.2288 10 6 5.6542 -1.3196 5.2234 11 8 5.1738 -2.0895 4.4146 12 6 6.6481 -1.8039 6.2052 13 6 7.2015 -0.9182 7.1365 14 6 8.1281 -1.3650 8.0611 15 6 8.5248 -2.6842 8.0693 16 6 7.9832 -3.5887 7.1368 17 6 8.3881 -4.9438 7.1430 18 1 9.3744 -5.2112 7.4928 19 6 7.5110 -5.9382 6.6958 20 7 6.2536 -5.6510 6.4764 21 14 8.1354 -7.6758 6.4121 22 1 8.6775 -8.2206 7.6827 23 1 7.0172 -8.5332 5.9435 24 1 9.2077 -7.6549 5.3850 25 6 7.0381 -3.1381 6.1997 26 6 4.4881 -0.0562 2.9459 27 6 3.6373 0.4173 1.9668 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.4942 1.9330 -0.7266 32 1 3.0648 1.2337 -0.2659 33 1 1.9362 2.7047 3.7863 34 1 3.4457 1.8566 5.5350 35 1 5.6005 0.5710 5.9217 36 1 6.9003 0.1189 7.1359 37 1 8.5466 -0.6744 8.7783 38 1 9.2522 -3.0245 8.7915 39 1 5.6456 -6.3403 6.1667 40 1 6.6167 -3.8244 5.4802 41 1 5.2057 -0.8283 2.7107 42 1 3.6899 0.0159 0.9655 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798131986.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:00 Heat of formation + Delta-G solvation = -90.784219 kcal Electronic energy + Delta-G solvation = -26267.707778 eV Core-core repulsion = 22370.103603 eV Total energy + Delta-G solvation = -3897.604176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.74499 -40.88255 -39.33037 -38.60800 -37.45367 -35.72180 -35.22810 -32.23861 -32.03965 -31.30368 -29.81834 -28.53788 -27.22356 -26.24274 -24.93743 -23.78132 -22.93328 -22.50451 -21.18767 -19.64416 -19.43477 -18.75220 -17.89737 -17.73475 -17.53247 -16.92566 -16.55875 -16.42846 -15.98856 -15.79425 -15.52734 -15.20882 -15.02313 -14.90512 -14.53124 -14.40622 -14.28718 -14.20105 -13.69461 -13.48447 -13.28369 -12.92292 -12.81621 -12.73463 -12.54077 -12.26742 -12.20380 -11.96250 -11.82003 -11.53631 -11.16808 -11.11328 -11.08941 -10.76743 -10.00846 -9.55237 -9.37381 -8.74084 -8.61283 -6.41442 0.09326 0.32991 0.53803 1.00230 1.36210 1.47503 1.49428 2.01719 2.06346 2.19549 2.27177 2.67772 2.79701 2.89668 3.66700 3.77288 3.86253 3.97381 4.06653 4.18107 4.30874 4.36709 4.43157 4.43876 4.52069 4.55346 4.58014 4.81914 4.83880 4.88913 5.04649 5.07071 5.15297 5.28953 5.32105 5.36439 5.44694 5.49645 5.72985 5.83717 5.88831 5.92343 6.04599 6.26927 6.39074 6.45275 6.61992 6.87875 6.92861 7.18897 8.33485 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.002705 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.335377 B =10350.437601 C =11892.315646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.202 3.798 4 O -0.334 6.334 5 C 0.104 3.896 6 C -0.127 4.127 7 C -0.102 4.102 8 C 0.101 3.899 9 N -0.655 5.655 10 C 0.561 3.439 11 O -0.567 6.567 12 C -0.141 4.141 13 C -0.190 4.190 14 C -0.098 4.098 15 C -0.208 4.208 16 C 0.064 3.936 17 C -0.497 4.497 18 H 0.084 0.916 19 C 0.025 3.975 20 N -0.834 5.834 21 Si 0.985 3.015 22 H -0.253 1.253 23 H -0.274 1.274 24 H -0.260 1.260 25 C -0.122 4.122 26 C -0.108 4.108 27 C -0.179 4.179 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.107 0.893 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.424 0.576 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.284 0.716 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 16.750 -8.503 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C 0.089 3.911 4 O -0.250 6.250 5 C 0.059 3.941 6 C -0.146 4.146 7 C -0.122 4.122 8 C 0.007 3.993 9 N -0.302 5.302 10 C 0.352 3.648 11 O -0.447 6.447 12 C -0.145 4.145 13 C -0.210 4.210 14 C -0.115 4.115 15 C -0.228 4.228 16 C 0.062 3.938 17 C -0.527 4.527 18 H 0.102 0.898 19 C -0.188 4.188 20 N -0.461 5.461 21 Si 0.806 3.194 22 H -0.177 1.177 23 H -0.199 1.199 24 H -0.185 1.185 25 C -0.143 4.143 26 C -0.128 4.128 27 C -0.198 4.198 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.125 0.875 33 H 0.179 0.821 34 H 0.182 0.818 35 H 0.265 0.735 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.129 0.871 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.216 16.066 -9.104 20.638 hybrid contribution 0.299 -1.119 -0.054 1.159 sum -8.917 14.947 -9.157 19.667 Atomic orbital electron populations 1.22966 0.79106 1.03678 1.01351 1.88068 1.22508 1.29809 1.93650 1.24602 1.00875 0.83397 0.82198 1.86204 1.57353 1.60648 1.20841 1.19016 0.90824 0.94243 0.89989 1.20528 1.01738 1.02946 0.89411 1.21001 0.93165 0.97049 1.00951 1.17956 0.94755 0.98478 0.88112 1.43265 1.47437 1.09998 1.29530 1.18894 0.80916 0.81570 0.83385 1.90706 1.56184 1.56313 1.41482 1.19667 1.00229 0.95369 0.99201 1.20918 1.02528 0.98586 0.98954 1.20957 0.97074 0.95138 0.98379 1.21495 1.05867 0.94879 1.00562 1.17967 0.91542 0.94169 0.90150 1.19833 1.01471 0.91581 1.39820 0.89768 1.26851 0.94135 1.05850 0.91967 1.69868 1.04887 1.37230 1.34081 0.85199 0.78674 0.75559 0.79981 1.17676 1.19868 1.18452 1.21509 1.00193 0.93329 0.99220 1.20925 1.00000 0.99813 0.92107 1.21176 0.98281 0.99754 1.00559 0.89307 0.93766 0.91218 0.84357 0.87502 0.82095 0.81809 0.73538 0.84183 0.83991 0.87103 0.90522 0.88151 0.87584 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.89 113.37 1.23 1.62 16 2 O -0.42 -8.96 10.18 -126.21 -1.29 -10.25 16 3 C 0.20 3.28 6.39 113.37 0.72 4.01 16 4 O -0.33 -7.06 10.19 -70.39 -0.72 -7.78 16 5 C 0.10 2.62 6.63 22.50 0.15 2.77 16 6 C -0.13 -2.81 9.98 22.35 0.22 -2.59 16 7 C -0.10 -2.40 9.96 22.38 0.22 -2.17 16 8 C 0.10 3.18 6.27 38.13 0.24 3.42 16 9 N -0.66 -21.70 5.29 -305.97 -1.62 -23.31 16 10 C 0.56 24.98 7.51 86.79 0.65 25.63 16 11 O -0.57 -29.90 14.05 -3.93 -0.06 -29.96 16 12 C -0.14 -6.64 5.87 -20.14 -0.12 -6.76 16 13 C -0.19 -7.25 9.54 22.70 0.22 -7.03 16 14 C -0.10 -3.74 10.01 22.18 0.22 -3.52 16 15 C -0.21 -9.56 9.78 22.77 0.22 -9.34 16 16 C 0.06 3.46 5.55 -21.32 -0.12 3.35 16 17 C -0.50 -27.12 9.06 23.47 0.21 -26.91 16 18 H 0.08 4.31 7.87 -2.91 -0.02 4.28 16 19 C 0.03 1.34 5.25 85.25 0.45 1.79 16 20 N -0.83 -47.24 10.83 21.82 0.24 -47.00 16 21 Si 0.99 40.14 29.57 68.60 2.03 42.17 16 22 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 25 C -0.12 -6.78 8.20 23.01 0.19 -6.59 16 26 C -0.11 -3.76 8.65 22.38 0.19 -3.57 16 27 C -0.18 -5.20 8.78 22.35 0.20 -5.00 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 0.72 8.03 -2.39 -0.02 0.70 16 30 H 0.07 0.69 8.11 -2.38 -0.02 0.67 16 31 H 0.14 1.21 8.01 -2.39 -0.02 1.19 16 32 H 0.11 1.58 6.70 -2.39 -0.02 1.56 16 33 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 35 H 0.42 10.73 6.85 -92.71 -0.64 10.09 16 36 H 0.14 3.90 6.39 -2.91 -0.02 3.88 16 37 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 38 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.28 14.98 8.30 -92.72 -0.77 14.22 16 40 H 0.10 6.26 5.78 -2.91 -0.02 6.25 16 41 H 0.11 4.34 6.45 -2.91 -0.02 4.32 16 42 H 0.14 3.68 5.85 -2.91 -0.02 3.67 16 Total: -1.00 -73.75 358.47 4.13 -69.62 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: 0.44 Total: 37.42 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 5.11 Total: -30.90 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -1.38 Total: -70.32 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -2.06 Total: -47.98 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -73.75 4.13 -69.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798131986.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.167 kcal (2) G-P(sol) polarization free energy of solvation -73.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds