Wall clock time and date at job start Tue Mar 31 2020 14:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35896 * 117.00092 * 2 1 4 4 C 1.38758 * 120.05377 * 359.95391 * 3 2 1 5 5 C 1.38127 * 119.94310 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05494 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11157 * 0.02647 * 6 5 4 8 8 C 1.38167 * 120.05470 * 359.95228 * 7 6 5 9 9 C 1.50707 * 120.02660 * 180.02562 * 8 7 6 10 10 O 1.42898 * 109.46941 * 0.02562 * 9 8 7 11 11 N 1.41605 * 114.00070 * 179.97438 * 10 9 8 12 12 C 1.34771 * 120.00257 * 179.97438 * 11 10 9 13 13 O 1.21590 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.47641 * 119.99948 * 180.02562 * 12 11 10 15 15 C 1.40018 * 119.89634 * 359.72512 * 14 12 11 16 16 C 1.36318 * 120.10387 * 179.71811 * 15 14 12 17 17 C 1.40881 * 119.89346 * 0.57861 * 16 15 14 18 18 C 1.41113 * 120.10218 * 179.67658 * 17 16 15 19 19 H 1.08008 * 119.99495 * 204.64902 * 18 17 16 20 20 C 1.40223 * 120.00118 * 24.65202 * 18 17 16 21 21 N 1.30644 * 119.99894 * 17.86392 * 20 18 17 22 22 Si 1.86800 * 120.00054 * 197.86347 * 20 18 17 23 23 H 1.48506 * 109.46902 * 59.99648 * 22 20 18 24 24 H 1.48498 * 109.47360 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47343 * 300.00345 * 22 20 18 26 26 C 1.40888 * 119.79750 * 359.69416 * 17 16 15 27 27 C 1.36321 * 119.88818 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.46783 * 60.00451 * 1 2 3 29 29 H 1.09001 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46958 * 300.00460 * 1 2 3 31 31 H 1.07996 * 120.03295 * 0.04547 * 4 3 2 32 32 H 1.07995 * 119.97490 * 180.29353 * 5 4 3 33 33 H 1.07994 * 119.94415 * 180.02562 * 6 5 4 34 34 H 1.08005 * 119.97209 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.46893 * 120.00206 * 9 8 7 36 36 H 1.08995 * 109.47421 * 240.00072 * 9 8 7 37 37 H 0.97008 * 119.99685 * 359.97438 * 11 10 9 38 38 H 1.07992 * 119.94641 * 0.02562 * 15 14 12 39 39 H 1.08002 * 120.05328 * 180.25165 * 16 15 14 40 40 H 0.96996 * 119.99777 * 179.97438 * 21 20 18 41 41 H 1.08000 * 120.05739 * 179.97438 * 26 17 16 42 42 H 1.07999 * 119.95127 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0010 5 6 1.9209 3.6048 -0.0015 6 6 3.3019 3.6758 -0.0016 7 6 4.0560 2.5171 -0.0017 8 6 3.4311 1.2848 -0.0008 9 6 4.2537 0.0221 -0.0003 10 8 5.6425 0.3584 -0.0004 11 7 6.5068 -0.7633 0.0005 12 6 7.8426 -0.5848 0.0000 13 8 8.3058 0.5395 -0.0008 14 6 8.7437 -1.7543 0.0004 15 6 8.2081 -3.0480 0.0072 16 6 9.0360 -4.1309 0.0019 17 6 10.4328 -3.9468 0.0018 18 6 11.2940 -5.0646 0.0032 19 1 12.2970 -4.9731 0.3933 20 6 10.8476 -6.2942 -0.5020 21 7 9.7976 -6.3391 -1.2781 22 14 11.7543 -7.8679 -0.0654 23 1 11.7363 -8.0572 1.4074 24 1 11.0880 -9.0215 -0.7215 25 1 13.1600 -7.7760 -0.5353 26 6 10.9671 -2.6432 0.0008 27 6 10.1312 -1.5664 0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2128 2.3204 -0.0010 32 1 1.3340 4.5114 0.0025 33 1 3.7922 4.6380 -0.0016 34 1 5.1345 2.5752 -0.0022 35 1 4.0218 -0.5623 0.8901 36 1 4.0212 -0.5634 -0.8898 37 1 6.1373 -1.6602 0.0016 38 1 7.1373 -3.1881 0.0117 39 1 8.6220 -5.1284 0.0030 40 1 9.4891 -7.1896 -1.6278 41 1 12.0372 -2.4972 0.0011 42 1 10.5397 -0.5666 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799096002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:00 Heat of formation + Delta-G solvation = -24.251946 kcal Electronic energy + Delta-G solvation = -25707.366748 eV Core-core repulsion = 21812.647628 eV Total energy + Delta-G solvation = -3894.719120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.50433 -38.97342 -37.85221 -37.26179 -36.44724 -33.91986 -32.82109 -31.29176 -30.35569 -29.69728 -29.46222 -27.65647 -26.28975 -25.61504 -22.44851 -22.04263 -21.73453 -20.98388 -19.81854 -18.29560 -17.94641 -17.54476 -16.68739 -16.20634 -16.06915 -15.84651 -15.48745 -15.41551 -14.60458 -14.47496 -14.04525 -13.84420 -13.80564 -13.78824 -13.23033 -12.93164 -12.83393 -12.56623 -12.28771 -12.14247 -11.97150 -11.52211 -11.43924 -11.41103 -11.29834 -11.13742 -11.09559 -10.97597 -10.67563 -10.10631 -9.60776 -9.39394 -9.06814 -9.05731 -8.49499 -8.33537 -7.77827 -7.60162 -7.08065 -4.65074 1.07947 1.20879 2.18519 2.31263 2.90398 2.92409 2.96394 2.96475 2.99180 3.52308 3.70843 3.84651 4.42783 4.52791 4.53942 4.73055 4.80711 4.84972 4.93080 5.05482 5.16024 5.20562 5.30289 5.32068 5.52014 5.58108 5.77720 5.81785 5.97125 6.05400 6.20528 6.27425 6.34931 6.58229 6.72836 6.78139 6.95477 7.06865 7.07725 7.28669 7.37902 7.56526 7.70623 7.80742 8.01652 8.09607 8.34471 8.58216 8.69733 9.07759 9.83816 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.021155 B = 0.002146 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.260997 B =13043.987592 C =14276.311846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.133 3.867 4 C -0.209 4.209 5 C -0.082 4.082 6 C -0.155 4.155 7 C -0.059 4.059 8 C -0.112 4.112 9 C 0.086 3.914 10 O -0.151 6.151 11 N -0.604 5.604 12 C 0.585 3.415 13 O -0.557 6.557 14 C -0.275 4.275 15 C -0.064 4.064 16 C -0.176 4.176 17 C 0.129 3.871 18 C -0.439 4.439 19 H 0.086 0.914 20 C 0.074 3.926 21 N -0.770 5.770 22 Si 0.915 3.085 23 H -0.260 1.260 24 H -0.276 1.276 25 H -0.262 1.262 26 C -0.237 4.237 27 C -0.017 4.017 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.143 0.857 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.405 0.595 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.288 0.712 41 H 0.101 0.899 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.780 7.743 1.649 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.087 3.913 4 C -0.228 4.228 5 C -0.100 4.100 6 C -0.173 4.173 7 C -0.077 4.077 8 C -0.114 4.114 9 C 0.008 3.992 10 O -0.154 6.154 11 N -0.309 5.309 12 C 0.381 3.619 13 O -0.436 6.436 14 C -0.280 4.280 15 C -0.083 4.083 16 C -0.196 4.196 17 C 0.125 3.875 18 C -0.466 4.466 19 H 0.104 0.896 20 C -0.148 4.148 21 N -0.392 5.392 22 Si 0.738 3.262 23 H -0.184 1.184 24 H -0.200 1.200 25 H -0.186 1.186 26 C -0.256 4.256 27 C -0.037 4.037 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.246 0.754 38 H 0.106 0.894 39 H 0.140 0.860 40 H 0.099 0.901 41 H 0.119 0.881 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.459 8.384 1.490 19.425 hybrid contribution -0.604 -1.138 0.025 1.288 sum -18.063 7.246 1.515 19.521 Atomic orbital electron populations 1.23070 0.78238 1.04086 1.01327 1.86078 1.21506 1.26725 1.88613 1.18645 0.90932 0.84568 0.97124 1.21131 0.99848 0.92147 1.09661 1.20969 0.94734 0.96916 0.97383 1.21123 0.93789 0.98625 1.03749 1.21031 1.01237 0.90520 0.94878 1.18819 0.89871 0.94960 1.07785 1.21319 0.80882 0.95032 1.01931 1.90455 1.13128 1.14435 1.97427 1.47714 1.01812 1.00721 1.80613 1.18713 0.78371 0.90196 0.74638 1.90656 1.75135 1.25559 1.52267 1.18593 0.92491 0.90055 1.26884 1.20471 0.97026 0.92352 0.98496 1.20972 0.93423 0.97687 1.07470 1.17798 0.92482 0.91954 0.85241 1.19848 1.00317 0.93209 1.33275 0.89602 1.26120 0.94728 1.01519 0.92427 1.69730 1.20490 1.29026 1.20002 0.86240 0.80405 0.79271 0.80261 1.18421 1.20036 1.18612 1.20710 0.97884 0.92407 1.14637 1.20335 0.91507 0.97845 0.93970 0.92603 0.88103 0.92616 0.85311 0.85748 0.85550 0.83946 0.90986 0.90950 0.75449 0.89370 0.86050 0.90080 0.88119 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.34 9.92 -19.41 -0.19 -3.53 16 3 C 0.13 1.53 6.66 -39.22 -0.26 1.27 16 4 C -0.21 -1.99 9.04 -39.43 -0.36 -2.34 16 5 C -0.08 -0.75 10.04 -39.60 -0.40 -1.15 16 6 C -0.15 -1.64 10.04 -39.56 -0.40 -2.04 16 7 C -0.06 -0.76 9.37 -39.61 -0.37 -1.14 16 8 C -0.11 -1.48 5.89 -104.47 -0.62 -2.10 16 9 C 0.09 1.19 6.09 36.01 0.22 1.41 16 10 O -0.15 -2.67 9.59 -29.62 -0.28 -2.96 16 11 N -0.60 -11.22 6.34 30.48 0.19 -11.03 16 12 C 0.59 13.10 7.91 -12.42 -0.10 13.01 16 13 O -0.56 -14.14 16.73 -12.86 -0.22 -14.36 16 14 C -0.28 -6.28 5.89 -104.73 -0.62 -6.90 16 15 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 16 C -0.18 -4.22 8.63 -39.27 -0.34 -4.56 16 17 C 0.13 3.21 5.58 -106.80 -0.60 2.61 16 18 C -0.44 -10.67 9.04 -37.75 -0.34 -11.01 16 19 H 0.09 1.98 7.91 -52.48 -0.42 1.57 16 20 C 0.07 1.68 5.14 -17.31 -0.09 1.59 16 21 N -0.77 -18.04 10.95 55.56 0.61 -17.43 16 22 Si 0.91 16.90 29.60 -169.99 -5.03 11.87 16 23 H -0.26 -4.79 7.11 56.52 0.40 -4.38 16 24 H -0.28 -4.96 7.11 56.52 0.40 -4.56 16 25 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 26 C -0.24 -5.62 9.73 -39.27 -0.38 -6.01 16 27 C -0.02 -0.40 9.52 -39.61 -0.38 -0.78 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.14 2.05 7.01 -52.48 -0.37 1.69 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 6.33 6.54 -40.82 -0.27 6.06 16 38 H 0.09 1.60 6.37 -52.49 -0.33 1.27 16 39 H 0.12 2.93 6.16 -52.49 -0.32 2.60 16 40 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 41 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 42 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -30.19 362.45 -8.77 -38.96 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -4.91 Total: 11.77 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -4.40 Total: -18.75 kcal Atomic # 7 Polarization: -29.26 SS G_CDS: 0.80 Total: -28.46 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.69 Total: -20.85 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.19 -8.77 -38.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799096002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.706 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds