Wall clock time and date at job start Tue Mar 31 2020 14:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35896 * 117.00092 * 2 1 4 4 C 1.38758 * 120.05377 * 359.95391 * 3 2 1 5 5 C 1.38127 * 119.94310 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05494 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11157 * 0.02647 * 6 5 4 8 8 C 1.38167 * 120.05470 * 359.95228 * 7 6 5 9 9 C 1.50707 * 120.02660 * 180.02562 * 8 7 6 10 10 O 1.42898 * 109.46941 * 0.02562 * 9 8 7 11 11 N 1.41605 * 114.00070 * 179.97438 * 10 9 8 12 12 C 1.34771 * 120.00257 * 179.97438 * 11 10 9 13 13 O 1.21590 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.47641 * 119.99948 * 180.02562 * 12 11 10 15 15 C 1.40018 * 119.89634 * 359.72512 * 14 12 11 16 16 C 1.36318 * 120.10387 * 179.71811 * 15 14 12 17 17 C 1.40881 * 119.89346 * 0.57861 * 16 15 14 18 18 C 1.41113 * 120.10218 * 179.67658 * 17 16 15 19 19 H 1.08008 * 119.99495 * 204.64902 * 18 17 16 20 20 C 1.40223 * 120.00118 * 24.65202 * 18 17 16 21 21 N 1.30644 * 119.99894 * 17.86392 * 20 18 17 22 22 Si 1.86800 * 120.00054 * 197.86347 * 20 18 17 23 23 H 1.48506 * 109.46902 * 59.99648 * 22 20 18 24 24 H 1.48498 * 109.47360 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47343 * 300.00345 * 22 20 18 26 26 C 1.40888 * 119.79750 * 359.69416 * 17 16 15 27 27 C 1.36321 * 119.88818 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.46783 * 60.00451 * 1 2 3 29 29 H 1.09001 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46958 * 300.00460 * 1 2 3 31 31 H 1.07996 * 120.03295 * 0.04547 * 4 3 2 32 32 H 1.07995 * 119.97490 * 180.29353 * 5 4 3 33 33 H 1.07994 * 119.94415 * 180.02562 * 6 5 4 34 34 H 1.08005 * 119.97209 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.46893 * 120.00206 * 9 8 7 36 36 H 1.08995 * 109.47421 * 240.00072 * 9 8 7 37 37 H 0.97008 * 119.99685 * 359.97438 * 11 10 9 38 38 H 1.07992 * 119.94641 * 0.02562 * 15 14 12 39 39 H 1.08002 * 120.05328 * 180.25165 * 16 15 14 40 40 H 0.96996 * 119.99777 * 179.97438 * 21 20 18 41 41 H 1.08000 * 120.05739 * 179.97438 * 26 17 16 42 42 H 1.07999 * 119.95127 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0010 5 6 1.9209 3.6048 -0.0015 6 6 3.3019 3.6758 -0.0016 7 6 4.0560 2.5171 -0.0017 8 6 3.4311 1.2848 -0.0008 9 6 4.2537 0.0221 -0.0003 10 8 5.6425 0.3584 -0.0004 11 7 6.5068 -0.7633 0.0005 12 6 7.8426 -0.5848 0.0000 13 8 8.3058 0.5395 -0.0008 14 6 8.7437 -1.7543 0.0004 15 6 8.2081 -3.0480 0.0072 16 6 9.0360 -4.1309 0.0019 17 6 10.4328 -3.9468 0.0018 18 6 11.2940 -5.0646 0.0032 19 1 12.2970 -4.9731 0.3933 20 6 10.8476 -6.2942 -0.5020 21 7 9.7976 -6.3391 -1.2781 22 14 11.7543 -7.8679 -0.0654 23 1 11.7363 -8.0572 1.4074 24 1 11.0880 -9.0215 -0.7215 25 1 13.1600 -7.7760 -0.5353 26 6 10.9671 -2.6432 0.0008 27 6 10.1312 -1.5664 0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2128 2.3204 -0.0010 32 1 1.3340 4.5114 0.0025 33 1 3.7922 4.6380 -0.0016 34 1 5.1345 2.5752 -0.0022 35 1 4.0218 -0.5623 0.8901 36 1 4.0212 -0.5634 -0.8898 37 1 6.1373 -1.6602 0.0016 38 1 7.1373 -3.1881 0.0117 39 1 8.6220 -5.1284 0.0030 40 1 9.4891 -7.1896 -1.6278 41 1 12.0372 -2.4972 0.0011 42 1 10.5397 -0.5666 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799096002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:59 Heat of formation + Delta-G solvation = -40.012191 kcal Electronic energy + Delta-G solvation = -25708.050163 eV Core-core repulsion = 21812.647628 eV Total energy + Delta-G solvation = -3895.402535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.30696 -40.68234 -39.12902 -38.56128 -37.86879 -35.69842 -34.14037 -32.65549 -31.40185 -31.21948 -31.13864 -28.26926 -27.70866 -26.97194 -23.96885 -23.10395 -22.83375 -22.59688 -21.49653 -19.46500 -19.28278 -19.09297 -18.13542 -17.25948 -17.09510 -16.96199 -16.76689 -16.49076 -16.03543 -15.76223 -15.39738 -15.38396 -15.14620 -14.87062 -14.59594 -14.49258 -13.98742 -13.77816 -13.67207 -13.52599 -13.23841 -12.88981 -12.85109 -12.68118 -12.40475 -12.38596 -12.32609 -12.04459 -11.86940 -11.79467 -11.38957 -11.12849 -10.88423 -10.08071 -9.85700 -9.59801 -9.44159 -9.18977 -8.80662 -6.49641 0.24154 0.38910 0.39407 0.86782 1.14518 1.40361 1.45424 1.53802 2.07914 2.17803 2.30338 2.69793 2.75626 3.39438 3.65635 3.67101 3.94012 4.02097 4.04051 4.18879 4.24680 4.27871 4.29374 4.40845 4.43206 4.43532 4.49476 4.71229 4.75994 4.92259 4.94387 5.01680 5.12710 5.24891 5.26652 5.36627 5.51107 5.56698 5.74298 5.77266 5.84569 5.88738 5.97678 6.20395 6.36193 6.46781 6.52428 6.75487 6.86338 7.38550 8.14209 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.021155 B = 0.002146 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.260997 B =13043.987592 C =14276.311846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.128 3.872 4 C -0.205 4.205 5 C -0.075 4.075 6 C -0.160 4.160 7 C -0.082 4.082 8 C -0.139 4.139 9 C 0.085 3.915 10 O -0.165 6.165 11 N -0.590 5.590 12 C 0.586 3.414 13 O -0.595 6.595 14 C -0.285 4.285 15 C -0.054 4.054 16 C -0.195 4.195 17 C 0.102 3.898 18 C -0.466 4.466 19 H 0.089 0.911 20 C 0.038 3.962 21 N -0.794 5.794 22 Si 0.988 3.012 23 H -0.258 1.258 24 H -0.264 1.264 25 H -0.259 1.259 26 C -0.249 4.249 27 C -0.027 4.027 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.142 0.858 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.419 0.581 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.298 0.702 41 H 0.109 0.891 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.249 7.219 1.766 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.082 3.918 4 C -0.223 4.223 5 C -0.093 4.093 6 C -0.179 4.179 7 C -0.101 4.101 8 C -0.141 4.141 9 C 0.009 3.991 10 O -0.170 6.170 11 N -0.293 5.293 12 C 0.381 3.619 13 O -0.477 6.477 14 C -0.290 4.290 15 C -0.073 4.073 16 C -0.215 4.215 17 C 0.098 3.902 18 C -0.493 4.493 19 H 0.107 0.893 20 C -0.182 4.182 21 N -0.417 5.417 22 Si 0.808 3.192 23 H -0.182 1.182 24 H -0.188 1.188 25 H -0.183 1.183 26 C -0.268 4.268 27 C -0.046 4.046 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.178 0.822 32 H 0.177 0.823 33 H 0.160 0.840 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.263 0.737 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.981 7.844 1.603 21.525 hybrid contribution -0.014 -0.917 -0.038 0.917 sum -19.995 6.927 1.564 21.219 Atomic orbital electron populations 1.23388 0.76019 1.05676 1.02574 1.86051 1.23835 1.26489 1.88478 1.18725 0.90391 0.85730 0.96963 1.21526 1.01354 0.91397 1.08029 1.21382 0.94194 0.98275 0.95410 1.21355 0.94740 0.98380 1.03381 1.20941 1.00297 0.91823 0.96996 1.18866 0.90914 0.94368 1.09983 1.21498 0.78799 0.96176 1.02657 1.90480 1.14988 1.14017 1.97500 1.47310 1.01356 1.01899 1.78784 1.18579 0.79476 0.89383 0.74491 1.90629 1.76194 1.26729 1.54148 1.18754 0.92567 0.90797 1.26845 1.20719 0.98735 0.91222 0.96591 1.21016 0.93438 0.98055 1.08952 1.18163 0.93411 0.92640 0.85937 1.20141 1.00691 0.94262 1.34202 0.89340 1.26949 0.95456 1.04165 0.91642 1.69749 1.21399 1.30497 1.20076 0.85143 0.79073 0.75089 0.79913 1.18181 1.18838 1.18272 1.20850 0.98474 0.92350 1.15153 1.20477 0.92180 0.97866 0.94127 0.91313 0.86548 0.91279 0.82220 0.82303 0.83997 0.86550 0.90114 0.90232 0.73748 0.85804 0.86478 0.89030 0.87302 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -6.49 9.92 -92.39 -0.92 -7.41 16 3 C 0.13 2.75 6.66 22.51 0.15 2.90 16 4 C -0.20 -3.29 9.04 22.37 0.20 -3.08 16 5 C -0.07 -1.16 10.04 22.26 0.22 -0.94 16 6 C -0.16 -3.24 10.04 22.28 0.22 -3.01 16 7 C -0.08 -2.20 9.37 22.25 0.21 -1.99 16 8 C -0.14 -3.68 5.89 -19.77 -0.12 -3.79 16 9 C 0.09 2.37 6.09 71.24 0.43 2.80 16 10 O -0.17 -5.98 9.59 -21.45 -0.21 -6.18 16 11 N -0.59 -21.94 6.34 -175.74 -1.11 -23.05 16 12 C 0.59 26.62 7.91 86.73 0.69 27.31 16 13 O -0.59 -31.07 16.73 13.35 0.22 -30.85 16 14 C -0.28 -13.16 5.89 -19.93 -0.12 -13.28 16 15 C -0.05 -2.33 9.47 22.25 0.21 -2.12 16 16 C -0.20 -9.45 8.63 22.47 0.19 -9.26 16 17 C 0.10 5.19 5.58 -21.28 -0.12 5.07 16 18 C -0.47 -22.93 9.04 23.46 0.21 -22.72 16 19 H 0.09 4.15 7.91 -2.91 -0.02 4.12 16 20 C 0.04 1.70 5.14 85.35 0.44 2.14 16 21 N -0.79 -37.02 10.95 21.87 0.24 -36.78 16 22 Si 0.99 33.85 29.60 68.60 2.03 35.88 16 23 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 24 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 25 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 26 C -0.25 -12.15 9.73 22.47 0.22 -11.94 16 27 C -0.03 -1.31 9.52 22.25 0.21 -1.10 16 28 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 29 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.49 7.66 -2.38 -0.02 0.48 16 31 H 0.16 1.50 6.30 -2.91 -0.02 1.48 16 32 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.12 3.63 7.01 -2.91 -0.02 3.60 16 35 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.42 12.74 6.54 -92.70 -0.61 12.13 16 38 H 0.12 4.32 6.37 -2.91 -0.02 4.30 16 39 H 0.12 5.70 6.16 -2.91 -0.02 5.68 16 40 H 0.30 12.36 8.29 -92.71 -0.77 11.59 16 41 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 42 H 0.11 4.93 7.63 -2.91 -0.02 4.91 16 Total: -1.00 -66.86 362.45 5.09 -61.77 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.46 Total: 38.35 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 4.37 Total: -31.73 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.87 Total: -59.83 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.90 Total: -44.44 kcal Atomic # 14 Polarization: 33.85 SS G_CDS: 2.03 Total: 35.88 kcal Total: -66.86 5.09 -61.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799096002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.758 kcal (2) G-P(sol) polarization free energy of solvation -66.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds