Wall clock time and date at job start Tue Mar 31 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35916 * 116.99891 * 2 1 4 4 C 1.38743 * 120.47561 * 359.97438 * 3 2 1 5 5 N 1.31814 * 120.68184 * 180.02562 * 4 3 2 6 6 C 1.31875 * 121.77989 * 359.72963 * 5 4 3 7 7 C 1.38202 * 120.88688 * 0.53590 * 6 5 4 8 8 C 1.50705 * 120.38662 * 179.74729 * 7 6 5 9 9 O 1.45197 * 109.47407 * 269.72293 * 8 7 6 10 10 C 1.34234 * 116.99835 * 179.97438 * 9 8 7 11 11 O 1.20824 * 119.99711 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99720 * 180.02562 * 10 9 8 13 13 C 1.50700 * 109.46813 * 180.02562 * 12 10 9 14 14 C 1.37640 * 120.13180 * 265.30632 * 13 12 10 15 15 C 1.38613 * 120.24862 * 180.32332 * 14 13 12 16 16 C 1.38655 * 120.50174 * 359.67182 * 15 14 13 17 17 C 1.37598 * 120.24576 * 359.97438 * 16 15 14 18 18 C 1.40702 * 120.12495 * 85.00356 * 13 12 10 19 19 C 1.41393 * 120.24620 * 359.97406 * 18 13 12 20 20 H 1.07999 * 119.99787 * 29.07372 * 19 18 13 21 21 C 1.39938 * 120.00244 * 209.07592 * 19 18 13 22 22 N 1.30823 * 120.00241 * 197.10039 * 21 19 18 23 23 Si 1.86803 * 119.99882 * 17.09514 * 21 19 18 24 24 H 1.48495 * 109.47432 * 270.00073 * 23 21 19 25 25 H 1.48498 * 109.46929 * 30.00589 * 23 21 19 26 26 H 1.48504 * 109.46998 * 150.00206 * 23 21 19 27 27 C 1.38576 * 119.22799 * 359.48025 * 7 6 5 28 28 H 1.09000 * 109.47196 * 300.00179 * 1 2 3 29 29 H 1.09002 * 109.47422 * 59.99822 * 1 2 3 30 30 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.65739 * 0.02562 * 4 3 2 32 32 H 1.08008 * 119.55378 * 180.26614 * 6 5 4 33 33 H 1.09002 * 109.46728 * 149.72119 * 8 7 6 34 34 H 1.09001 * 109.46714 * 29.72920 * 8 7 6 35 35 H 1.08999 * 109.47299 * 60.00549 * 12 10 9 36 36 H 1.08998 * 109.47401 * 300.00018 * 12 10 9 37 37 H 1.08005 * 119.87130 * 0.02562 * 14 13 12 38 38 H 1.08001 * 119.74473 * 179.69460 * 15 14 13 39 39 H 1.08002 * 119.87493 * 180.02562 * 16 15 14 40 40 H 1.08003 * 120.12022 * 180.02562 * 17 16 15 41 41 H 0.97004 * 119.99819 * 355.45620 * 22 21 19 42 42 H 1.07997 * 120.81765 * 180.22960 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3808 -0.0005 5 7 1.8942 3.5575 -0.0010 6 6 3.2079 3.6721 0.0042 7 6 4.0178 2.5523 -0.0006 8 6 5.5179 2.6965 -0.0002 9 8 6.0002 2.7419 -1.3690 10 6 7.3249 2.8696 -1.5444 11 8 8.0571 2.9406 -0.5860 12 6 7.8987 2.9244 -2.9369 13 6 9.3967 3.0683 -2.8575 14 6 9.9752 4.3157 -2.9186 15 6 11.3532 4.4504 -2.8526 16 6 12.1638 3.3335 -2.7176 17 6 11.6068 2.0773 -2.6472 18 6 10.2090 1.9284 -2.7142 19 6 9.6255 0.6424 -2.6433 20 1 8.6871 0.4471 -3.1408 21 6 10.2640 -0.3772 -1.9285 22 7 9.9259 -1.6254 -2.1263 23 14 11.5992 0.0440 -0.6918 24 1 12.9190 0.0537 -1.3723 25 1 11.3315 1.3845 -0.1117 26 1 11.6085 -0.9714 0.3918 27 6 3.4344 1.2953 -0.0001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2213 2.3268 -0.0005 32 1 3.6569 4.6544 0.0080 33 1 5.9645 1.8456 0.5144 34 1 5.7943 3.6174 0.5132 35 1 7.4791 3.7779 -3.4694 36 1 7.6499 2.0061 -3.4688 37 1 9.3533 5.1925 -3.0233 38 1 11.7988 5.4327 -2.9063 39 1 13.2363 3.4502 -2.6668 40 1 12.2401 1.2088 -2.5417 41 1 9.1885 -1.8401 -2.7188 42 1 4.0428 0.4030 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808534106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:24 Heat of formation + Delta-G solvation = -71.848990 kcal Electronic energy + Delta-G solvation = -26546.386815 eV Core-core repulsion = 22649.603732 eV Total energy + Delta-G solvation = -3896.783083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.97224 -39.94308 -38.47768 -37.90616 -35.99270 -33.71385 -33.27723 -32.02342 -31.11734 -30.21128 -28.14811 -27.56455 -26.28795 -24.59182 -23.82234 -22.16786 -21.52989 -20.93684 -19.38452 -18.24799 -18.13239 -17.44436 -17.13981 -16.94348 -16.19327 -15.99087 -15.85294 -15.35031 -14.63182 -14.38646 -14.17678 -13.94738 -13.84412 -13.64296 -13.32738 -12.95082 -12.73536 -12.46407 -12.25476 -12.25131 -12.05580 -11.91820 -11.84181 -11.37542 -11.29626 -10.83394 -10.40586 -10.35637 -10.20855 -10.07937 -9.75307 -9.70623 -9.64515 -9.31566 -9.00736 -8.74017 -7.71223 -7.66920 -7.22746 -4.55921 0.69420 1.02888 2.44955 2.71075 2.79989 2.88822 3.15764 3.23438 3.41253 3.62323 3.68740 4.05938 4.16783 4.33078 4.51012 4.57962 4.69260 4.74908 4.75625 4.85889 5.01840 5.11414 5.27143 5.40353 5.46488 5.59331 5.67189 5.75338 5.87725 5.98110 6.03017 6.14814 6.17396 6.19498 6.48040 6.70005 6.85131 6.87366 7.00986 7.31370 7.47555 7.62163 7.64921 7.66880 7.80253 7.95607 8.35112 8.40180 8.54702 8.75687 10.03293 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.003045 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.979258 B = 9194.630504 C =10386.102002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.074 3.926 4 C 0.021 3.979 5 N -0.452 5.452 6 C 0.085 3.915 7 C -0.098 4.098 8 C 0.109 3.891 9 O -0.362 6.362 10 C 0.463 3.537 11 O -0.486 6.486 12 C -0.040 4.040 13 C -0.187 4.187 14 C -0.062 4.062 15 C -0.246 4.246 16 C -0.072 4.072 17 C -0.243 4.243 18 C 0.117 3.883 19 C -0.516 4.516 20 H 0.077 0.923 21 C 0.047 3.953 22 N -0.818 5.818 23 Si 1.069 2.931 24 H -0.278 1.278 25 H -0.258 1.258 26 H -0.292 1.292 27 C -0.084 4.084 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.284 0.716 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.817 4.991 3.623 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.027 3.973 4 C -0.137 4.137 5 N -0.160 5.160 6 C -0.073 4.073 7 C -0.100 4.100 8 C 0.034 3.966 9 O -0.281 6.281 10 C 0.305 3.695 11 O -0.371 6.371 12 C -0.077 4.077 13 C -0.188 4.188 14 C -0.080 4.080 15 C -0.265 4.265 16 C -0.091 4.091 17 C -0.262 4.262 18 C 0.114 3.886 19 C -0.544 4.544 20 H 0.095 0.905 21 C -0.172 4.172 22 N -0.441 5.441 23 Si 0.896 3.104 24 H -0.205 1.205 25 H -0.182 1.182 26 H -0.219 1.219 27 C -0.111 4.111 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.176 0.824 32 H 0.179 0.821 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.034 4.777 4.956 16.535 hybrid contribution -0.934 -0.170 -1.016 1.391 sum -15.968 4.607 3.940 17.080 Atomic orbital electron populations 1.23134 0.77937 1.04484 1.01543 1.86115 1.21672 1.25877 1.88524 1.20026 0.92982 0.85865 0.98422 1.22948 1.00557 0.87257 1.02906 1.67590 1.11867 1.26359 1.10200 1.22624 0.88526 0.98706 0.97472 1.20447 0.95724 0.93344 1.00493 1.21572 0.88423 1.03852 0.82707 1.86589 1.26798 1.84729 1.29977 1.24267 0.79043 0.72350 0.93807 1.90652 1.59684 1.43932 1.42804 1.19969 0.94007 1.04240 0.89521 1.18995 0.91223 0.93365 1.15237 1.20451 0.94573 0.95133 0.97880 1.20345 0.93445 0.96834 1.15917 1.20639 0.97610 0.93115 0.97689 1.21142 0.94991 0.96338 1.13729 1.17513 0.91087 0.92578 0.87463 1.20592 1.08683 0.95096 1.30047 0.90526 1.27184 1.00424 0.91868 0.97771 1.70562 1.23137 1.19267 1.31130 0.83652 0.74522 0.76965 0.75261 1.20496 1.18218 1.21928 1.20934 0.91805 0.98691 0.99621 0.92392 0.92331 0.87800 0.82413 0.82140 0.89885 0.89834 0.89167 0.87789 0.88933 0.88819 0.88731 0.87655 0.90429 0.83488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.13 16 2 O -0.31 -3.24 10.51 -19.48 -0.20 -3.44 16 3 C 0.07 0.85 6.71 -39.07 -0.26 0.59 16 4 C 0.02 0.23 10.22 -17.37 -0.18 0.05 16 5 N -0.45 -5.54 10.36 -13.13 -0.14 -5.68 16 6 C 0.08 1.01 10.85 -17.55 -0.19 0.82 16 7 C -0.10 -1.24 5.54 -104.51 -0.58 -1.82 16 8 C 0.11 1.55 5.61 36.01 0.20 1.75 16 9 O -0.36 -6.16 10.20 -39.27 -0.40 -6.56 16 10 C 0.46 9.20 7.95 36.01 0.29 9.49 16 11 O -0.49 -11.21 15.78 -18.75 -0.30 -11.51 16 12 C -0.04 -0.77 5.47 -29.03 -0.16 -0.93 16 13 C -0.19 -4.23 4.43 -103.91 -0.46 -4.69 16 14 C -0.06 -1.31 9.66 -39.66 -0.38 -1.69 16 15 C -0.25 -5.16 10.05 -39.29 -0.39 -5.55 16 16 C -0.07 -1.58 10.02 -39.66 -0.40 -1.98 16 17 C -0.24 -5.92 7.26 -38.87 -0.28 -6.21 16 18 C 0.12 2.94 5.13 -106.83 -0.55 2.39 16 19 C -0.52 -13.58 8.80 -37.75 -0.33 -13.91 16 20 H 0.08 2.03 6.60 -52.49 -0.35 1.68 16 21 C 0.05 1.24 5.42 -17.34 -0.09 1.15 16 22 N -0.82 -22.05 13.65 55.55 0.76 -21.29 16 23 Si 1.07 25.38 24.89 -169.99 -4.23 21.15 16 24 H -0.28 -6.19 6.45 56.52 0.36 -5.83 16 25 H -0.26 -6.33 7.01 56.52 0.40 -5.93 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 C -0.08 -1.05 9.81 -39.14 -0.38 -1.44 16 28 H 0.06 0.27 7.68 -51.93 -0.40 -0.13 16 29 H 0.06 0.29 7.68 -51.93 -0.40 -0.11 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.16 1.20 6.32 -52.48 -0.33 0.87 16 32 H 0.16 1.59 8.06 -52.48 -0.42 1.16 16 33 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 34 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 35 H 0.09 1.42 8.06 -51.93 -0.42 1.01 16 36 H 0.10 2.01 6.51 -51.93 -0.34 1.68 16 37 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.11 2.55 4.43 -52.48 -0.23 2.32 16 41 H 0.28 7.42 8.73 -40.82 -0.36 7.06 16 42 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -31.33 359.34 -7.29 -38.63 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.04 Total: 4.13 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -3.16 Total: -20.84 kcal Atomic # 7 Polarization: -27.59 SS G_CDS: 0.62 Total: -26.97 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.90 Total: -21.51 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.23 Total: 21.15 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.33 -7.29 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808534106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.223 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds