Wall clock time and date at job start Tue Mar 31 2020 14:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35899 * 117.00334 * 2 1 4 4 C 1.38730 * 120.05972 * 180.02562 * 3 2 1 5 5 C 1.38151 * 119.94546 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05510 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94134 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47505 * 25.00390 * 7 6 5 9 9 O 1.42900 * 109.46928 * 145.00247 * 7 6 5 10 10 C 1.50702 * 109.47044 * 264.99967 * 7 6 5 11 11 O 1.21294 * 119.99776 * 245.00574 * 10 7 6 12 12 N 1.34771 * 120.00131 * 64.99935 * 10 7 6 13 13 C 1.39935 * 119.99867 * 175.95988 * 12 10 7 14 14 C 1.39293 * 119.95006 * 214.91326 * 13 12 10 15 15 C 1.38481 * 120.43092 * 179.72707 * 14 13 12 16 16 C 1.37685 * 120.31895 * 0.55322 * 15 14 13 17 17 C 1.40734 * 119.88652 * 359.72186 * 16 15 14 18 18 C 1.41416 * 120.21100 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00058 * 214.74404 * 18 17 16 20 20 C 1.39929 * 119.99784 * 34.73874 * 18 17 16 21 21 N 1.30823 * 120.00397 * 355.54623 * 20 18 17 22 22 Si 1.86803 * 119.99669 * 175.54683 * 20 18 17 23 23 H 1.48504 * 109.47160 * 90.00117 * 22 20 18 24 24 H 1.48503 * 109.47068 * 210.00191 * 22 20 18 25 25 H 1.48503 * 109.47102 * 330.00120 * 22 20 18 26 26 C 1.38248 * 119.94717 * 35.19308 * 13 12 10 27 27 C 1.38270 * 120.11041 * 0.27263 * 6 5 4 28 28 C 1.38147 * 120.05290 * 359.45430 * 27 6 5 29 29 H 1.08993 * 109.47534 * 59.99753 * 1 2 3 30 30 H 1.09000 * 109.47516 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46917 * 299.99601 * 1 2 3 32 32 H 1.07999 * 120.03009 * 359.95588 * 4 3 2 33 33 H 1.07999 * 119.97117 * 180.02562 * 5 4 3 34 34 H 0.96701 * 114.00298 * 59.99738 * 9 7 6 35 35 H 0.97001 * 119.99855 * 355.68998 * 12 10 7 36 36 H 1.07999 * 119.77872 * 0.02562 * 14 13 12 37 37 H 1.07998 * 119.84022 * 180.27975 * 15 14 13 38 38 H 1.08005 * 120.05537 * 179.75251 * 16 15 14 39 39 H 0.97000 * 120.00240 * 179.97438 * 21 20 18 40 40 H 1.07994 * 120.15801 * 359.97393 * 26 13 12 41 41 H 1.08001 * 119.97117 * 179.70114 * 27 6 5 42 42 H 1.08007 * 120.02289 * 180.27115 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0185 -0.0028 8 1 4.9807 4.9191 -0.4374 9 8 3.2188 5.9434 -0.7759 10 6 4.1044 5.5233 1.4123 11 8 3.5083 6.5239 1.7510 12 7 4.8723 4.8629 2.3014 13 6 5.0499 5.3772 3.5906 14 6 6.2703 5.2148 4.2421 15 6 6.4588 5.7247 5.5157 16 6 5.4370 6.3885 6.1569 17 6 4.1966 6.5554 5.5134 18 6 3.1427 7.2366 6.1653 19 1 2.1203 6.9258 6.0087 20 6 3.4245 8.3133 7.0134 21 7 4.6660 8.6349 7.2720 22 14 2.0279 9.2916 7.7764 23 1 1.6529 8.6853 9.0791 24 1 2.4657 10.6943 7.9910 25 1 0.8551 9.2728 6.8657 26 6 4.0119 6.0408 4.2179 27 6 1.9211 3.6048 0.0041 28 6 1.2915 2.3751 -0.0011 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 4.0209 0.3799 -0.0002 33 1 5.1345 2.5750 -0.0019 34 1 2.3202 6.0813 -0.4461 35 1 5.2987 4.0290 2.0489 36 1 7.0762 4.6919 3.7488 37 1 7.4104 5.5971 6.0103 38 1 5.5874 6.7810 7.1518 39 1 4.8613 9.3815 7.8596 40 1 3.0640 6.1637 3.7152 41 1 1.3342 4.5114 0.0085 42 1 0.2129 2.3202 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144778193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:10 Heat of formation + Delta-G solvation = -71.622418 kcal Electronic energy + Delta-G solvation = -26771.935307 eV Core-core repulsion = 22875.162049 eV Total energy + Delta-G solvation = -3896.773258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.71937 -39.82958 -38.14225 -37.15849 -36.02088 -34.42672 -33.04307 -31.36447 -31.23405 -29.79377 -28.61093 -27.70634 -26.13491 -25.25903 -22.95565 -22.22481 -21.37722 -20.80943 -19.73681 -18.60908 -18.02293 -17.39229 -16.93317 -16.61399 -16.02252 -15.61362 -15.29714 -15.01120 -14.85450 -14.58896 -14.29899 -13.98915 -13.85372 -13.35740 -13.22019 -13.04154 -12.90526 -12.76133 -12.33153 -12.21140 -11.83824 -11.70775 -11.43536 -11.19224 -11.15848 -11.10036 -10.84241 -10.61849 -10.45018 -10.13800 -9.84946 -9.40504 -9.26179 -9.06432 -8.90562 -8.31527 -7.37142 -6.89269 -6.55716 -4.35706 1.05038 1.10510 2.53262 2.84262 2.97115 3.12787 3.14850 3.20287 3.28779 3.36489 3.59762 4.02821 4.31492 4.46271 4.48312 4.59411 4.72119 4.77085 4.83971 4.97516 5.02050 5.08697 5.14541 5.27767 5.43186 5.67771 5.73089 5.92663 6.06750 6.22284 6.26317 6.35682 6.43312 6.72514 6.97957 7.03203 7.08533 7.10671 7.31693 7.37641 7.55457 7.73102 7.96738 8.11792 8.14219 8.28147 8.61471 8.71715 8.98627 9.00029 10.35067 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.002999 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.892205 B = 9335.326306 C = 9742.797444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.130 3.870 4 C -0.147 4.147 5 C -0.069 4.069 6 C -0.153 4.153 7 C 0.141 3.859 8 H 0.131 0.869 9 O -0.531 6.531 10 C 0.479 3.521 11 O -0.506 6.506 12 N -0.660 5.660 13 C 0.139 3.861 14 C -0.248 4.248 15 C -0.099 4.099 16 C -0.160 4.160 17 C 0.112 3.888 18 C -0.461 4.461 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.813 5.813 22 Si 0.915 3.085 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.198 4.198 27 C -0.062 4.062 28 C -0.202 4.202 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.382 0.618 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.277 0.723 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.276 -14.061 -13.813 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.084 3.916 4 C -0.165 4.165 5 C -0.087 4.087 6 C -0.154 4.154 7 C 0.078 3.922 8 H 0.148 0.852 9 O -0.337 6.337 10 C 0.264 3.736 11 O -0.380 6.380 12 N -0.305 5.305 13 C 0.047 3.953 14 C -0.270 4.270 15 C -0.119 4.119 16 C -0.180 4.180 17 C 0.110 3.890 18 C -0.492 4.492 19 H 0.092 0.908 20 C -0.144 4.144 21 N -0.440 5.440 22 Si 0.740 3.260 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.219 4.219 27 C -0.080 4.080 28 C -0.220 4.220 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.232 0.768 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.147 0.853 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.144 0.856 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.980 -13.296 -13.838 19.599 hybrid contribution -1.009 0.222 0.554 1.172 sum -4.989 -13.073 -13.284 19.294 Atomic orbital electron populations 1.23080 0.78232 1.04024 1.01557 1.86066 1.21542 1.26888 1.88584 1.19079 0.92459 0.84161 0.95864 1.20391 0.91370 0.98582 1.06176 1.20782 0.99926 0.90734 0.97247 1.20172 0.94420 0.94913 1.05903 1.20616 0.96730 0.85378 0.89492 0.85201 1.86597 1.30053 1.63888 1.53122 1.21328 0.80257 0.84481 0.87562 1.90788 1.43923 1.24764 1.78533 1.43387 1.49865 1.25208 1.11994 1.17476 0.94708 1.00292 0.82788 1.20130 0.95225 1.13160 0.98455 1.20549 0.97885 0.98996 0.94420 1.21654 0.94055 1.01111 1.01132 1.17565 0.93257 0.88742 0.89477 1.19480 0.94321 1.12496 1.22853 0.90778 1.25841 0.96508 0.97457 0.94578 1.69750 1.19165 1.25297 1.29773 0.86208 0.81483 0.78741 0.79600 1.19554 1.20285 1.18731 1.21199 0.97987 1.07549 0.95148 1.20688 0.93741 0.97498 0.96070 1.21193 1.00213 0.92065 1.08565 0.92579 0.88176 0.92412 0.84779 0.84771 0.76807 0.76842 0.89185 0.88901 0.85272 0.91208 0.87137 0.85559 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.23 10.50 -19.42 -0.20 -3.43 16 3 C 0.13 1.41 6.69 -39.22 -0.26 1.14 16 4 C -0.15 -1.49 9.99 -39.43 -0.39 -1.88 16 5 C -0.07 -0.67 9.38 -39.60 -0.37 -1.05 16 6 C -0.15 -1.75 4.93 -104.60 -0.52 -2.26 16 7 C 0.14 1.81 3.62 -29.04 -0.11 1.71 16 8 H 0.13 1.37 8.05 -51.93 -0.42 0.95 16 9 O -0.53 -7.25 12.79 -55.09 -0.70 -7.95 16 10 C 0.48 8.43 6.99 -10.99 -0.08 8.35 16 11 O -0.51 -11.29 13.78 -14.32 -0.20 -11.49 16 12 N -0.66 -11.56 5.29 -9.91 -0.05 -11.61 16 13 C 0.14 3.13 6.29 -83.76 -0.53 2.60 16 14 C -0.25 -5.42 9.97 -39.10 -0.39 -5.81 16 15 C -0.10 -2.32 10.02 -39.69 -0.40 -2.72 16 16 C -0.16 -4.22 8.67 -38.84 -0.34 -4.55 16 17 C 0.11 3.11 5.55 -106.85 -0.59 2.52 16 18 C -0.46 -12.79 9.04 -37.74 -0.34 -13.13 16 19 H 0.07 2.00 7.85 -52.48 -0.41 1.58 16 20 C 0.07 1.86 5.42 -17.35 -0.09 1.77 16 21 N -0.81 -21.78 10.60 55.55 0.59 -21.19 16 22 Si 0.91 19.70 29.56 -169.99 -5.03 14.68 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 26 C -0.20 -5.13 8.43 -38.68 -0.33 -5.46 16 27 C -0.06 -0.70 9.32 -39.60 -0.37 -1.06 16 28 C -0.20 -2.10 9.04 -39.43 -0.36 -2.46 16 29 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.38 4.49 7.14 45.56 0.33 4.82 16 35 H 0.40 5.38 8.51 -40.82 -0.35 5.03 16 36 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.13 3.53 6.13 -52.48 -0.32 3.20 16 39 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 40 H 0.11 2.96 6.23 -52.49 -0.33 2.63 16 41 H 0.13 1.27 6.62 -52.49 -0.35 0.92 16 42 H 0.13 1.08 6.30 -52.48 -0.33 0.75 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -33.61 357.81 -8.89 -42.50 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -4.22 Total: 14.24 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -4.46 Total: -21.14 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.54 Total: -32.80 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -1.11 Total: -22.87 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.61 -8.89 -42.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144778193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.123 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds