Wall clock time and date at job start Tue Mar 31 2020 14:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35899 * 117.00334 * 2 1 4 4 C 1.38730 * 120.05972 * 180.02562 * 3 2 1 5 5 C 1.38151 * 119.94546 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05510 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94134 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47505 * 25.00390 * 7 6 5 9 9 O 1.42900 * 109.46928 * 145.00247 * 7 6 5 10 10 C 1.50702 * 109.47044 * 264.99967 * 7 6 5 11 11 O 1.21294 * 119.99776 * 245.00574 * 10 7 6 12 12 N 1.34771 * 120.00131 * 64.99935 * 10 7 6 13 13 C 1.39935 * 119.99867 * 175.95988 * 12 10 7 14 14 C 1.39293 * 119.95006 * 214.91326 * 13 12 10 15 15 C 1.38481 * 120.43092 * 179.72707 * 14 13 12 16 16 C 1.37685 * 120.31895 * 0.55322 * 15 14 13 17 17 C 1.40734 * 119.88652 * 359.72186 * 16 15 14 18 18 C 1.41416 * 120.21100 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00058 * 214.74404 * 18 17 16 20 20 C 1.39929 * 119.99784 * 34.73874 * 18 17 16 21 21 N 1.30823 * 120.00397 * 355.54623 * 20 18 17 22 22 Si 1.86803 * 119.99669 * 175.54683 * 20 18 17 23 23 H 1.48504 * 109.47160 * 90.00117 * 22 20 18 24 24 H 1.48503 * 109.47068 * 210.00191 * 22 20 18 25 25 H 1.48503 * 109.47102 * 330.00120 * 22 20 18 26 26 C 1.38248 * 119.94717 * 35.19308 * 13 12 10 27 27 C 1.38270 * 120.11041 * 0.27263 * 6 5 4 28 28 C 1.38147 * 120.05290 * 359.45430 * 27 6 5 29 29 H 1.08993 * 109.47534 * 59.99753 * 1 2 3 30 30 H 1.09000 * 109.47516 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46917 * 299.99601 * 1 2 3 32 32 H 1.07999 * 120.03009 * 359.95588 * 4 3 2 33 33 H 1.07999 * 119.97117 * 180.02562 * 5 4 3 34 34 H 0.96701 * 114.00298 * 59.99738 * 9 7 6 35 35 H 0.97001 * 119.99855 * 355.68998 * 12 10 7 36 36 H 1.07999 * 119.77872 * 0.02562 * 14 13 12 37 37 H 1.07998 * 119.84022 * 180.27975 * 15 14 13 38 38 H 1.08005 * 120.05537 * 179.75251 * 16 15 14 39 39 H 0.97000 * 120.00240 * 179.97438 * 21 20 18 40 40 H 1.07994 * 120.15801 * 359.97393 * 26 13 12 41 41 H 1.08001 * 119.97117 * 179.70114 * 27 6 5 42 42 H 1.08007 * 120.02289 * 180.27115 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0185 -0.0028 8 1 4.9807 4.9191 -0.4374 9 8 3.2188 5.9434 -0.7759 10 6 4.1044 5.5233 1.4123 11 8 3.5083 6.5239 1.7510 12 7 4.8723 4.8629 2.3014 13 6 5.0499 5.3772 3.5906 14 6 6.2703 5.2148 4.2421 15 6 6.4588 5.7247 5.5157 16 6 5.4370 6.3885 6.1569 17 6 4.1966 6.5554 5.5134 18 6 3.1427 7.2366 6.1653 19 1 2.1203 6.9258 6.0087 20 6 3.4245 8.3133 7.0134 21 7 4.6660 8.6349 7.2720 22 14 2.0279 9.2916 7.7764 23 1 1.6529 8.6853 9.0791 24 1 2.4657 10.6943 7.9910 25 1 0.8551 9.2728 6.8657 26 6 4.0119 6.0408 4.2179 27 6 1.9211 3.6048 0.0041 28 6 1.2915 2.3751 -0.0011 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 4.0209 0.3799 -0.0002 33 1 5.1345 2.5750 -0.0019 34 1 2.3202 6.0813 -0.4461 35 1 5.2987 4.0290 2.0489 36 1 7.0762 4.6919 3.7488 37 1 7.4104 5.5971 6.0103 38 1 5.5874 6.7810 7.1518 39 1 4.8613 9.3815 7.8596 40 1 3.0640 6.1637 3.7152 41 1 1.3342 4.5114 0.0085 42 1 0.2129 2.3202 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144778193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:09 Heat of formation + Delta-G solvation = -93.852697 kcal Electronic energy + Delta-G solvation = -26772.899284 eV Core-core repulsion = 22875.162049 eV Total energy + Delta-G solvation = -3897.737235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80685 -40.91277 -39.43512 -38.51943 -37.14685 -36.13495 -34.85083 -32.24834 -32.09809 -31.73561 -30.10586 -28.50888 -27.31901 -27.10818 -23.83347 -23.44962 -22.84479 -22.40673 -21.25322 -19.70940 -19.29741 -18.85427 -18.01537 -17.62429 -17.25178 -16.82407 -16.67269 -16.45720 -16.38395 -15.73769 -15.54776 -15.22534 -14.80474 -14.72761 -14.58300 -14.25898 -14.11236 -13.93312 -13.68384 -13.56145 -13.07521 -12.96641 -12.91038 -12.78981 -12.54422 -12.29362 -12.21276 -11.96140 -11.81576 -11.78654 -11.67469 -11.11610 -10.87610 -10.52925 -10.03003 -9.32198 -9.17322 -8.72297 -8.50159 -6.42268 0.23447 0.32073 0.85061 0.98198 1.34687 1.44115 1.50420 1.67921 2.09806 2.22483 2.33813 2.66173 2.77739 3.32490 3.50861 3.67139 3.71711 3.79304 3.86828 4.14647 4.24720 4.36165 4.38628 4.47243 4.54223 4.60953 4.66563 4.71799 4.97467 5.03402 5.11515 5.13883 5.16327 5.20272 5.29489 5.35665 5.45240 5.69450 5.74823 5.83952 6.06845 6.14692 6.34370 6.35863 6.37396 6.60557 6.70816 6.95607 7.00677 7.23674 8.41593 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.002999 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.892205 B = 9335.326306 C = 9742.797444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.120 3.880 4 C -0.156 4.156 5 C -0.062 4.062 6 C -0.167 4.167 7 C 0.158 3.842 8 H 0.163 0.837 9 O -0.541 6.541 10 C 0.476 3.524 11 O -0.559 6.559 12 N -0.647 5.647 13 C 0.145 3.855 14 C -0.234 4.234 15 C -0.099 4.099 16 C -0.186 4.186 17 C 0.080 3.920 18 C -0.504 4.504 19 H 0.063 0.937 20 C 0.029 3.971 21 N -0.841 5.841 22 Si 0.986 3.014 23 H -0.256 1.256 24 H -0.266 1.266 25 H -0.267 1.267 26 C -0.223 4.223 27 C -0.078 4.078 28 C -0.211 4.211 29 H 0.066 0.934 30 H 0.121 0.879 31 H 0.058 0.942 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.388 0.612 35 H 0.421 0.579 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.284 0.716 40 H 0.090 0.910 41 H 0.128 0.872 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.150 -15.681 -15.099 21.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.074 3.926 4 C -0.174 4.174 5 C -0.080 4.080 6 C -0.168 4.168 7 C 0.095 3.905 8 H 0.180 0.820 9 O -0.348 6.348 10 C 0.263 3.737 11 O -0.437 6.437 12 N -0.294 5.294 13 C 0.052 3.948 14 C -0.255 4.255 15 C -0.117 4.117 16 C -0.206 4.206 17 C 0.078 3.922 18 C -0.535 4.535 19 H 0.081 0.919 20 C -0.183 4.183 21 N -0.469 5.469 22 Si 0.807 3.193 23 H -0.180 1.180 24 H -0.191 1.191 25 H -0.191 1.191 26 C -0.244 4.244 27 C -0.096 4.096 28 C -0.229 4.229 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.076 0.924 32 H 0.169 0.831 33 H 0.185 0.815 34 H 0.238 0.762 35 H 0.259 0.741 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.146 0.854 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.836 -14.973 -15.156 21.493 hybrid contribution -1.334 0.568 0.830 1.671 sum -4.170 -14.405 -14.325 20.739 Atomic orbital electron populations 1.23338 0.76602 1.05650 1.02094 1.86050 1.23328 1.26683 1.88431 1.19363 0.93147 0.84465 0.95577 1.20714 0.91379 0.99481 1.05834 1.21118 1.01498 0.89771 0.95639 1.20102 0.94488 0.94575 1.07646 1.20650 0.98396 0.85558 0.85847 0.82018 1.86570 1.30641 1.64407 1.53139 1.22364 0.78522 0.83477 0.89289 1.90774 1.45790 1.27279 1.79861 1.43270 1.49969 1.26038 1.10102 1.17562 0.93968 0.98732 0.84510 1.20593 0.95753 1.11511 0.97656 1.20923 0.98211 0.97534 0.95079 1.21597 0.94884 1.03095 1.01032 1.17889 0.94133 0.89720 0.90505 1.19695 0.94102 1.14503 1.25207 0.91864 1.26693 0.99264 0.97824 0.94518 1.69819 1.20816 1.25932 1.30353 0.85152 0.77821 0.77492 0.78865 1.18047 1.19061 1.19117 1.21156 0.98535 1.09617 0.95127 1.20888 0.94254 0.98030 0.96447 1.21373 1.01158 0.91791 1.08596 0.91549 0.86108 0.92354 0.83069 0.81511 0.76177 0.74074 0.84503 0.85731 0.87022 0.90524 0.89231 0.85448 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.21 10.50 -92.41 -0.97 -7.18 16 3 C 0.12 2.41 6.69 22.51 0.15 2.56 16 4 C -0.16 -2.75 9.99 22.37 0.22 -2.53 16 5 C -0.06 -1.02 9.38 22.26 0.21 -0.81 16 6 C -0.17 -3.48 4.93 -19.85 -0.10 -3.58 16 7 C 0.16 3.74 3.62 29.10 0.11 3.85 16 8 H 0.16 2.78 8.05 -2.39 -0.02 2.76 16 9 O -0.54 -14.24 12.79 -129.99 -1.66 -15.91 16 10 C 0.48 16.34 6.99 87.66 0.61 16.95 16 11 O -0.56 -25.62 13.78 15.91 0.22 -25.40 16 12 N -0.65 -21.36 5.29 -303.64 -1.61 -22.96 16 13 C 0.15 6.41 6.29 38.10 0.24 6.65 16 14 C -0.23 -9.57 9.97 22.58 0.23 -9.34 16 15 C -0.10 -4.47 10.02 22.20 0.22 -4.25 16 16 C -0.19 -10.09 8.67 22.75 0.20 -9.89 16 17 C 0.08 4.64 5.55 -21.31 -0.12 4.52 16 18 C -0.50 -29.63 9.04 23.46 0.21 -29.42 16 19 H 0.06 3.66 7.85 -2.91 -0.02 3.64 16 20 C 0.03 1.55 5.42 85.25 0.46 2.02 16 21 N -0.84 -46.58 10.60 21.82 0.23 -46.35 16 22 Si 0.99 41.55 29.56 68.60 2.03 43.58 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 24 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 26 C -0.22 -11.99 8.43 22.85 0.19 -11.80 16 27 C -0.08 -1.70 9.32 22.26 0.21 -1.49 16 28 C -0.21 -4.19 9.04 22.37 0.20 -3.98 16 29 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 30 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.66 7.66 -2.38 -0.02 0.64 16 32 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 34 H 0.39 9.18 7.14 -74.06 -0.53 8.65 16 35 H 0.42 9.80 8.51 -92.71 -0.79 9.01 16 36 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 38 H 0.11 6.35 6.13 -2.91 -0.02 6.34 16 39 H 0.28 14.25 8.30 -92.71 -0.77 13.48 16 40 H 0.09 5.10 6.23 -2.91 -0.02 5.08 16 41 H 0.13 2.60 6.62 -2.91 -0.02 2.58 16 42 H 0.14 2.28 6.30 -2.91 -0.02 2.26 16 Total: -1.00 -77.22 357.81 2.37 -74.85 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: -0.23 Total: 38.61 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 4.36 Total: -39.23 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -1.38 Total: -69.31 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -2.41 Total: -48.50 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -77.22 2.37 -74.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144778193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.004 kcal (2) G-P(sol) polarization free energy of solvation -77.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds