Wall clock time and date at job start Tue Mar 31 2020 14:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34794 * 117.00287 * 2 1 4 4 O 1.21558 * 120.00052 * 359.97438 * 3 2 1 5 5 C 1.47076 * 120.00123 * 180.02562 * 3 2 1 6 6 C 1.39966 * 120.11882 * 359.97438 * 5 3 2 7 7 C 1.36442 * 120.09749 * 179.97438 * 6 5 3 8 8 C 1.39417 * 120.36168 * 0.02562 * 7 6 5 9 9 N 1.39087 * 119.88212 * 179.97438 * 8 7 6 10 10 C 1.39735 * 119.99797 * 154.71318 * 9 8 7 11 11 C 1.39348 * 119.95185 * 327.80561 * 10 9 8 12 12 C 1.38477 * 120.41848 * 180.02562 * 11 10 9 13 13 C 1.37691 * 120.33036 * 359.97438 * 12 11 10 14 14 C 1.40753 * 119.89319 * 0.02562 * 13 12 11 15 15 C 1.41409 * 120.20492 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00184 * 334.76870 * 15 14 13 17 17 C 1.39933 * 119.99876 * 154.77829 * 15 14 13 18 18 N 1.30833 * 119.99717 * 344.45344 * 17 15 14 19 19 Si 1.86794 * 120.00110 * 164.45739 * 17 15 14 20 20 H 1.48504 * 109.47239 * 89.99527 * 19 17 15 21 21 H 1.48497 * 109.47342 * 209.99764 * 19 17 15 22 22 H 1.48504 * 109.47291 * 329.99794 * 19 17 15 23 23 C 1.38288 * 119.95192 * 147.82926 * 10 9 8 24 24 C 1.38952 * 120.23641 * 0.27672 * 8 7 6 25 25 C 1.38373 * 119.89544 * 359.42791 * 24 8 7 26 26 O 1.35650 * 120.17589 * 180.26926 * 25 24 8 27 27 C 1.42901 * 117.00095 * 0.29724 * 26 25 24 28 28 H 1.09005 * 109.47123 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46721 * 299.99927 * 1 2 3 30 30 H 1.08991 * 109.47369 * 59.99920 * 1 2 3 31 31 H 1.07996 * 119.95477 * 359.97438 * 6 5 3 32 32 H 1.08007 * 119.81874 * 179.97438 * 7 6 5 33 33 H 0.96996 * 119.99612 * 334.72184 * 9 8 7 34 34 H 1.07996 * 119.79084 * 0.04828 * 11 10 9 35 35 H 1.07999 * 119.83174 * 179.97438 * 12 11 10 36 36 H 1.07998 * 120.05456 * 180.02562 * 13 12 11 37 37 H 0.96998 * 119.99355 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.16062 * 0.25200 * 23 10 9 39 39 H 1.08007 * 120.04881 * 179.72405 * 24 8 7 40 40 H 1.09002 * 109.46906 * 179.97438 * 27 26 25 41 41 H 1.08998 * 109.46983 * 299.99747 * 27 26 25 42 42 H 1.08998 * 109.47017 * 60.00034 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4020 2.2205 -0.0005 5 6 3.5328 1.2779 -0.0006 6 6 4.2975 0.1056 -0.0006 7 6 5.6600 0.1775 -0.0016 8 6 6.3003 1.4159 -0.0022 9 7 7.6898 1.4776 -0.0027 10 6 8.3391 2.6015 -0.5202 11 6 7.7698 3.3087 -1.5773 12 6 8.4051 4.4235 -2.0979 13 6 9.6070 4.8461 -1.5757 14 6 10.1942 4.1419 -0.5078 15 6 11.4287 4.5697 0.0332 16 1 12.1159 5.1400 -0.5743 17 6 11.7601 4.2541 1.3555 18 7 10.8333 3.8405 2.1812 19 14 13.5255 4.4232 1.9419 20 1 13.7406 5.7919 2.4766 21 1 13.7897 3.4270 3.0110 22 1 14.4499 4.1854 0.8043 23 6 9.5459 3.0102 0.0173 24 6 5.5554 2.5889 0.0042 25 6 4.1730 2.5279 -0.0010 26 8 3.4402 3.6694 -0.0003 27 6 4.1611 4.9032 -0.0009 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 3.8084 -0.8572 0.0003 32 1 6.2457 -0.7300 -0.0012 33 1 8.2081 0.7403 0.3560 34 1 6.8269 2.9854 -1.9930 35 1 7.9555 4.9643 -2.9176 36 1 10.0984 5.7164 -1.9849 37 1 11.0629 3.6221 3.0980 38 1 9.9903 2.4603 0.8338 39 1 6.0546 3.5466 0.0082 40 1 3.4571 5.7354 -0.0007 41 1 4.7887 4.9577 0.8886 42 1 4.7873 4.9577 -0.8913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174431411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:17 Heat of formation + Delta-G solvation = -71.530283 kcal Electronic energy + Delta-G solvation = -26959.587837 eV Core-core repulsion = 23062.818574 eV Total energy + Delta-G solvation = -3896.769262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.60495 -39.54623 -38.44138 -37.15429 -36.09188 -34.92310 -33.49519 -30.52308 -30.22088 -29.63126 -28.15495 -27.71608 -26.55385 -25.41607 -23.34410 -22.27190 -21.10656 -20.83177 -20.27185 -18.25846 -17.70517 -17.24398 -16.85019 -16.22642 -16.03306 -15.62635 -15.46149 -15.26625 -14.84401 -14.81258 -14.31822 -13.72158 -13.60901 -13.26910 -13.18762 -12.97547 -12.55920 -12.49203 -12.42864 -12.06277 -11.88045 -11.54820 -11.42229 -11.21470 -11.15970 -11.01491 -10.78011 -10.68729 -10.57628 -10.16758 -10.14809 -9.90988 -9.70054 -9.28995 -8.36780 -8.05839 -7.55786 -6.91093 -6.64286 -4.52620 1.03816 1.66481 2.60488 2.75368 2.87970 2.98486 3.00007 3.03152 3.12520 3.40363 3.79232 3.83429 4.02270 4.50105 4.93278 5.08172 5.08818 5.15151 5.24361 5.32212 5.42751 5.45342 5.46841 5.52110 5.66690 5.76101 5.80707 6.06523 6.21875 6.34604 6.40379 6.45689 6.55425 6.64223 6.74534 6.90821 6.93115 7.10633 7.13723 7.45442 7.57628 7.67274 7.79086 7.90669 8.05642 8.18665 8.19500 8.51441 8.75322 8.79763 10.05905 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.002818 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.536215 B = 9932.131409 C =10329.002395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.364 6.364 3 C 0.514 3.486 4 O -0.504 6.504 5 C -0.231 4.231 6 C 0.010 3.990 7 C -0.236 4.236 8 C 0.288 3.712 9 N -0.667 5.667 10 C 0.159 3.841 11 C -0.266 4.266 12 C -0.076 4.076 13 C -0.235 4.235 14 C 0.126 3.874 15 C -0.459 4.459 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.792 5.792 19 Si 0.908 3.092 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.189 4.189 24 C -0.279 4.279 25 C 0.228 3.772 26 O -0.288 6.288 27 C 0.021 3.979 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.406 0.594 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.281 0.719 38 H 0.124 0.876 39 H 0.150 0.850 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.125 -6.778 -1.281 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.281 6.281 3 C 0.360 3.640 4 O -0.393 6.393 5 C -0.234 4.234 6 C -0.009 4.009 7 C -0.258 4.258 8 C 0.181 3.819 9 N -0.285 5.285 10 C 0.066 3.934 11 C -0.287 4.287 12 C -0.095 4.095 13 C -0.255 4.255 14 C 0.123 3.877 15 C -0.489 4.489 16 H 0.098 0.902 17 C -0.143 4.143 18 N -0.418 5.418 19 Si 0.733 3.267 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.211 4.211 24 C -0.302 4.302 25 C 0.179 3.821 26 O -0.198 6.198 27 C -0.074 4.074 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.242 0.758 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.142 0.858 39 H 0.168 0.832 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.545 -6.374 -1.083 13.232 hybrid contribution 1.079 0.014 0.552 1.212 sum -10.466 -6.360 -0.531 12.258 Atomic orbital electron populations 1.23154 0.76899 1.03098 1.02322 1.86542 1.22816 1.33474 1.85311 1.20869 0.88875 0.81125 0.73111 1.90857 1.66552 1.35603 1.46281 1.18026 0.88878 0.91757 1.24763 1.20618 0.92807 0.96778 0.90672 1.20364 0.94643 0.96184 1.14632 1.17791 0.83853 0.92919 0.87336 1.42280 1.02370 1.20471 1.63373 1.17616 0.94021 0.87989 0.93793 1.20201 1.03266 1.02842 1.02376 1.20366 0.95367 0.95762 0.97976 1.21022 0.97699 1.02458 1.04281 1.17392 0.91687 0.88948 0.89653 1.19586 1.02060 1.30680 0.96548 0.90239 1.25924 0.99052 0.92622 0.96683 1.69809 1.33909 1.32524 1.05509 0.86304 0.82415 0.78950 0.79062 1.19424 1.20084 1.18426 1.21085 0.96766 0.99476 1.03792 1.21057 0.91614 1.00059 1.17478 1.18698 0.89169 0.85423 0.88790 1.86260 1.34546 1.12518 1.86500 1.23181 0.98025 0.83935 1.02306 0.88485 0.92203 0.92191 0.84391 0.85405 0.75846 0.88783 0.88992 0.88800 0.90823 0.85800 0.83222 0.88285 0.92204 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.57 101.05 1.07 1.45 16 2 O -0.36 -4.79 9.80 -40.75 -0.40 -5.19 16 3 C 0.51 8.26 7.88 34.31 0.27 8.53 16 4 O -0.50 -9.33 14.94 -26.65 -0.40 -9.73 16 5 C -0.23 -3.68 5.89 -104.84 -0.62 -4.30 16 6 C 0.01 0.14 9.55 -39.58 -0.38 -0.24 16 7 C -0.24 -3.28 9.86 -39.79 -0.39 -3.67 16 8 C 0.29 4.78 6.04 -83.87 -0.51 4.28 16 9 N -0.67 -11.80 5.43 -8.48 -0.05 -11.84 16 10 C 0.16 3.37 5.87 -83.82 -0.49 2.87 16 11 C -0.27 -5.51 7.75 -39.08 -0.30 -5.81 16 12 C -0.08 -1.59 10.01 -39.69 -0.40 -1.99 16 13 C -0.23 -5.39 9.79 -38.83 -0.38 -5.77 16 14 C 0.13 3.15 5.57 -106.85 -0.60 2.55 16 15 C -0.46 -11.48 9.06 -37.74 -0.34 -11.82 16 16 H 0.08 1.91 7.89 -52.48 -0.41 1.50 16 17 C 0.08 1.78 5.18 -17.34 -0.09 1.69 16 18 N -0.79 -19.32 10.87 55.55 0.60 -18.72 16 19 Si 0.91 17.75 29.59 -169.99 -5.03 12.72 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 23 C -0.19 -4.50 8.59 -38.67 -0.33 -4.83 16 24 C -0.28 -4.86 6.84 -39.27 -0.27 -5.13 16 25 C 0.23 3.91 6.70 -38.70 -0.26 3.65 16 26 O -0.29 -4.93 8.56 -40.57 -0.35 -5.28 16 27 C 0.02 0.28 9.81 101.05 0.99 1.28 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.14 1.49 7.60 -52.49 -0.40 1.09 16 32 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.41 6.30 8.88 -40.82 -0.36 5.94 16 34 H 0.09 1.86 6.59 -52.49 -0.35 1.52 16 35 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.09 2.04 8.06 -52.49 -0.42 1.61 16 37 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 38 H 0.12 3.04 6.14 -52.48 -0.32 2.72 16 39 H 0.15 2.79 4.56 -52.48 -0.24 2.55 16 40 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.06 0.82 7.65 -51.93 -0.40 0.43 16 42 H 0.06 0.85 7.68 -51.93 -0.40 0.45 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -28.82 357.49 -8.23 -37.05 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -4.97 Total: 12.86 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -3.02 Total: -17.26 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.56 Total: -30.56 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -1.15 Total: -20.19 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.82 -8.23 -37.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174431411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.482 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds