Wall clock time and date at job start Tue Mar 31 2020 14:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34794 * 117.00287 * 2 1 4 4 O 1.21558 * 120.00052 * 359.97438 * 3 2 1 5 5 C 1.47076 * 120.00123 * 180.02562 * 3 2 1 6 6 C 1.39966 * 120.11882 * 359.97438 * 5 3 2 7 7 C 1.36442 * 120.09749 * 179.97438 * 6 5 3 8 8 C 1.39417 * 120.36168 * 0.02562 * 7 6 5 9 9 N 1.39087 * 119.88212 * 179.97438 * 8 7 6 10 10 C 1.39735 * 119.99797 * 154.71318 * 9 8 7 11 11 C 1.39348 * 119.95185 * 327.80561 * 10 9 8 12 12 C 1.38477 * 120.41848 * 180.02562 * 11 10 9 13 13 C 1.37691 * 120.33036 * 359.97438 * 12 11 10 14 14 C 1.40753 * 119.89319 * 0.02562 * 13 12 11 15 15 C 1.41409 * 120.20492 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00184 * 334.76870 * 15 14 13 17 17 C 1.39933 * 119.99876 * 154.77829 * 15 14 13 18 18 N 1.30833 * 119.99717 * 344.45344 * 17 15 14 19 19 Si 1.86794 * 120.00110 * 164.45739 * 17 15 14 20 20 H 1.48504 * 109.47239 * 89.99527 * 19 17 15 21 21 H 1.48497 * 109.47342 * 209.99764 * 19 17 15 22 22 H 1.48504 * 109.47291 * 329.99794 * 19 17 15 23 23 C 1.38288 * 119.95192 * 147.82926 * 10 9 8 24 24 C 1.38952 * 120.23641 * 0.27672 * 8 7 6 25 25 C 1.38373 * 119.89544 * 359.42791 * 24 8 7 26 26 O 1.35650 * 120.17589 * 180.26926 * 25 24 8 27 27 C 1.42901 * 117.00095 * 0.29724 * 26 25 24 28 28 H 1.09005 * 109.47123 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46721 * 299.99927 * 1 2 3 30 30 H 1.08991 * 109.47369 * 59.99920 * 1 2 3 31 31 H 1.07996 * 119.95477 * 359.97438 * 6 5 3 32 32 H 1.08007 * 119.81874 * 179.97438 * 7 6 5 33 33 H 0.96996 * 119.99612 * 334.72184 * 9 8 7 34 34 H 1.07996 * 119.79084 * 0.04828 * 11 10 9 35 35 H 1.07999 * 119.83174 * 179.97438 * 12 11 10 36 36 H 1.07998 * 120.05456 * 180.02562 * 13 12 11 37 37 H 0.96998 * 119.99355 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.16062 * 0.25200 * 23 10 9 39 39 H 1.08007 * 120.04881 * 179.72405 * 24 8 7 40 40 H 1.09002 * 109.46906 * 179.97438 * 27 26 25 41 41 H 1.08998 * 109.46983 * 299.99747 * 27 26 25 42 42 H 1.08998 * 109.47017 * 60.00034 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4020 2.2205 -0.0005 5 6 3.5328 1.2779 -0.0006 6 6 4.2975 0.1056 -0.0006 7 6 5.6600 0.1775 -0.0016 8 6 6.3003 1.4159 -0.0022 9 7 7.6898 1.4776 -0.0027 10 6 8.3391 2.6015 -0.5202 11 6 7.7698 3.3087 -1.5773 12 6 8.4051 4.4235 -2.0979 13 6 9.6070 4.8461 -1.5757 14 6 10.1942 4.1419 -0.5078 15 6 11.4287 4.5697 0.0332 16 1 12.1159 5.1400 -0.5743 17 6 11.7601 4.2541 1.3555 18 7 10.8333 3.8405 2.1812 19 14 13.5255 4.4232 1.9419 20 1 13.7406 5.7919 2.4766 21 1 13.7897 3.4270 3.0110 22 1 14.4499 4.1854 0.8043 23 6 9.5459 3.0102 0.0173 24 6 5.5554 2.5889 0.0042 25 6 4.1730 2.5279 -0.0010 26 8 3.4402 3.6694 -0.0003 27 6 4.1611 4.9032 -0.0009 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 3.8084 -0.8572 0.0003 32 1 6.2457 -0.7300 -0.0012 33 1 8.2081 0.7403 0.3560 34 1 6.8269 2.9854 -1.9930 35 1 7.9555 4.9643 -2.9176 36 1 10.0984 5.7164 -1.9849 37 1 11.0629 3.6221 3.0980 38 1 9.9903 2.4603 0.8338 39 1 6.0546 3.5466 0.0082 40 1 3.4571 5.7354 -0.0007 41 1 4.7887 4.9577 0.8886 42 1 4.7873 4.9577 -0.8913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174431411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:16 Heat of formation + Delta-G solvation = -85.588692 kcal Electronic energy + Delta-G solvation = -26960.197455 eV Core-core repulsion = 23062.818574 eV Total energy + Delta-G solvation = -3897.378881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83780 -40.78481 -39.89223 -38.58266 -37.25169 -36.40464 -35.19269 -31.89486 -31.64872 -31.19524 -29.57212 -28.76456 -27.66674 -27.19392 -24.62370 -23.62823 -22.68113 -22.14488 -21.77225 -19.62588 -19.19724 -18.54477 -18.13265 -17.56066 -17.31963 -16.95460 -16.72057 -16.65752 -16.43656 -16.27201 -15.52323 -15.22580 -14.88303 -14.64106 -14.38552 -14.30308 -14.12983 -13.81985 -13.60828 -13.52155 -13.05614 -12.98519 -12.77094 -12.63446 -12.56972 -12.43104 -12.25301 -12.16180 -11.69752 -11.67811 -11.65992 -11.38065 -11.30600 -10.97528 -9.78734 -9.38718 -9.32840 -8.65635 -8.18165 -6.38442 -0.22947 0.45921 0.96051 1.10013 1.39211 1.47927 1.53626 1.67590 1.83226 2.20269 2.22791 2.40940 2.70063 2.83898 3.72110 3.78511 3.96417 4.04703 4.18771 4.29708 4.31096 4.38708 4.39604 4.39812 4.50123 4.64061 4.65802 4.68718 4.75703 4.89697 5.00251 5.13070 5.20178 5.20975 5.25278 5.34260 5.43839 5.48936 5.61936 5.86116 5.97569 6.08145 6.10097 6.29355 6.45491 6.75701 6.76648 6.88102 6.94302 7.02398 8.31793 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.002818 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.536215 B = 9932.131409 C =10329.002395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.359 6.359 3 C 0.515 3.485 4 O -0.536 6.536 5 C -0.241 4.241 6 C 0.025 3.975 7 C -0.222 4.222 8 C 0.272 3.728 9 N -0.667 5.667 10 C 0.171 3.829 11 C -0.261 4.261 12 C -0.073 4.073 13 C -0.255 4.255 14 C 0.098 3.902 15 C -0.496 4.496 16 H 0.076 0.924 17 C 0.037 3.963 18 N -0.822 5.822 19 Si 0.979 3.021 20 H -0.265 1.265 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.213 4.213 24 C -0.289 4.289 25 C 0.214 3.786 26 O -0.305 6.305 27 C 0.019 3.981 28 H 0.136 0.864 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.173 0.827 32 H 0.160 0.840 33 H 0.415 0.585 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.287 0.713 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.054 0.946 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.169 -8.727 -1.415 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.275 6.275 3 C 0.362 3.638 4 O -0.427 6.427 5 C -0.244 4.244 6 C 0.006 3.994 7 C -0.243 4.243 8 C 0.167 3.833 9 N -0.287 5.287 10 C 0.076 3.924 11 C -0.282 4.282 12 C -0.091 4.091 13 C -0.275 4.275 14 C 0.095 3.905 15 C -0.525 4.525 16 H 0.094 0.906 17 C -0.178 4.178 18 N -0.448 5.448 19 Si 0.800 3.200 20 H -0.190 1.190 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.235 4.235 24 C -0.312 4.312 25 C 0.165 3.835 26 O -0.216 6.216 27 C -0.076 4.076 28 H 0.155 0.845 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.191 0.809 32 H 0.178 0.822 33 H 0.253 0.747 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.072 0.928 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.626 -8.357 -1.220 15.190 hybrid contribution 1.140 0.545 0.547 1.377 sum -11.486 -7.812 -0.673 13.907 Atomic orbital electron populations 1.23517 0.74770 1.05678 1.02226 1.86519 1.24820 1.31624 1.84584 1.20922 0.88934 0.81502 0.72398 1.90840 1.67225 1.36849 1.47822 1.18349 0.89441 0.92169 1.24470 1.20976 0.92475 0.97294 0.88653 1.20670 0.94979 0.96081 1.12615 1.18030 0.83138 0.93894 0.88256 1.42144 1.02951 1.19758 1.63818 1.17616 0.93123 0.88499 0.93147 1.20390 1.03416 1.02540 1.01877 1.20678 0.94507 0.95702 0.98256 1.21175 0.98771 1.02976 1.04544 1.17756 0.92353 0.89757 0.90657 1.19821 1.02769 1.32303 0.97622 0.90585 1.26692 1.02930 0.91885 0.96273 1.69869 1.35712 1.33236 1.05954 0.85250 0.77176 0.79078 0.78520 1.18968 1.19152 1.18304 1.20996 0.98274 0.99904 1.04350 1.20943 0.91951 0.99746 1.18587 1.18897 0.89097 0.86070 0.89392 1.86242 1.35444 1.13304 1.86614 1.23328 0.98599 0.83697 1.01934 0.84549 0.92375 0.92330 0.80934 0.82202 0.74715 0.87545 0.86075 0.88399 0.90275 0.87239 0.85075 0.85802 0.92754 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.57 113.37 1.20 1.72 16 2 O -0.36 -8.45 9.80 -57.06 -0.56 -9.01 16 3 C 0.51 15.73 7.88 70.14 0.55 16.28 16 4 O -0.54 -19.51 14.94 26.66 0.40 -19.11 16 5 C -0.24 -7.27 5.89 -20.00 -0.12 -7.38 16 6 C 0.02 0.59 9.55 22.27 0.21 0.80 16 7 C -0.22 -5.45 9.86 22.13 0.22 -5.23 16 8 C 0.27 8.66 6.04 38.45 0.23 8.89 16 9 N -0.67 -23.14 5.43 -180.74 -0.98 -24.12 16 10 C 0.17 7.28 5.87 38.16 0.22 7.51 16 11 C -0.26 -10.73 7.75 22.59 0.18 -10.55 16 12 C -0.07 -3.03 10.01 22.20 0.22 -2.81 16 13 C -0.25 -11.96 9.79 22.76 0.22 -11.74 16 14 C 0.10 5.05 5.57 -21.31 -0.12 4.93 16 15 C -0.50 -25.72 9.06 23.46 0.21 -25.51 16 16 H 0.08 3.82 7.89 -2.91 -0.02 3.80 16 17 C 0.04 1.80 5.18 85.25 0.44 2.25 16 18 N -0.82 -41.22 10.87 21.82 0.24 -40.99 16 19 Si 0.98 36.88 29.59 68.60 2.03 38.91 16 20 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 22 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 23 C -0.21 -10.46 8.59 22.86 0.20 -10.26 16 24 C -0.29 -9.99 6.84 22.47 0.15 -9.83 16 25 C 0.21 7.23 6.70 22.84 0.15 7.38 16 26 O -0.30 -10.47 8.56 -68.68 -0.59 -11.06 16 27 C 0.02 0.53 9.81 113.37 1.11 1.64 16 28 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.17 2.89 7.60 -2.91 -0.02 2.86 16 32 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.42 12.55 8.88 -92.71 -0.82 11.73 16 34 H 0.11 4.10 6.59 -2.91 -0.02 4.08 16 35 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.10 4.37 8.06 -2.91 -0.02 4.34 16 37 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 38 H 0.11 5.61 6.14 -2.91 -0.02 5.59 16 39 H 0.13 4.99 4.56 -2.91 -0.01 4.97 16 40 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.05 1.54 7.65 -2.39 -0.02 1.53 16 42 H 0.06 1.68 7.68 -2.39 -0.02 1.66 16 Total: -1.00 -64.33 357.49 6.08 -58.25 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: 0.25 Total: 39.05 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 5.29 Total: -31.92 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.74 Total: -65.11 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.75 Total: -39.18 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Total: -64.33 6.08 -58.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174431411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.334 kcal (2) G-P(sol) polarization free energy of solvation -64.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds