Wall clock time and date at job start Tue Mar 31 2020 14:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35897 * 116.99990 * 2 1 4 4 C 1.38819 * 120.01884 * 0.02562 * 3 2 1 5 5 C 1.38170 * 120.08876 * 179.97438 * 4 3 2 6 6 C 1.38159 * 120.12948 * 359.79286 * 5 4 3 7 7 C 1.50703 * 119.98262 * 180.22632 * 6 5 4 8 8 O 1.42899 * 109.47019 * 0.23530 * 7 6 5 9 9 C 1.38907 * 120.03330 * 0.46796 * 6 5 4 10 10 N 1.39849 * 120.04126 * 179.78800 * 9 6 5 11 11 C 1.34781 * 119.99861 * 208.00814 * 10 9 6 12 12 O 1.21553 * 119.99982 * 355.53326 * 11 10 9 13 13 C 1.47857 * 119.99598 * 175.81465 * 11 10 9 14 14 C 1.39934 * 120.02754 * 359.44259 * 13 11 10 15 15 C 1.38324 * 120.35444 * 179.76477 * 14 13 11 16 16 C 1.37760 * 120.41376 * 0.52129 * 15 14 13 17 17 C 1.40747 * 120.04095 * 359.73643 * 16 15 14 18 18 C 1.41439 * 120.17783 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99673 * 332.11562 * 18 17 16 20 20 C 1.39937 * 119.99959 * 152.11008 * 18 17 16 21 21 N 1.30826 * 119.99970 * 347.75230 * 20 18 17 22 22 Si 1.86805 * 119.99904 * 167.75044 * 20 18 17 23 23 H 1.48501 * 109.46939 * 60.00431 * 22 20 18 24 24 H 1.48494 * 109.47127 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47073 * 300.00498 * 22 20 18 26 26 C 1.39013 * 120.02207 * 179.72893 * 13 11 10 27 27 C 1.38575 * 120.02315 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47576 * 59.99890 * 1 2 3 29 29 H 1.09005 * 109.46759 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46871 * 299.99260 * 1 2 3 31 31 H 1.07999 * 119.94982 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.93502 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.46628 * 120.23440 * 7 6 5 34 34 H 1.09003 * 109.46899 * 240.23490 * 7 6 5 35 35 H 0.96702 * 113.99502 * 179.97438 * 8 7 6 36 36 H 0.96999 * 119.99902 * 28.01345 * 10 9 6 37 37 H 1.08002 * 119.81863 * 0.02562 * 14 13 11 38 38 H 1.08001 * 119.79231 * 180.23723 * 15 14 13 39 39 H 1.07996 * 119.97616 * 179.76413 * 16 15 14 40 40 H 0.96999 * 119.99852 * 179.97438 * 21 20 18 41 41 H 1.07998 * 120.20418 * 359.94687 * 26 13 11 42 42 H 1.07999 * 120.06453 * 0.04161 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 0.0005 5 6 1.9160 3.6072 0.0011 6 6 3.2954 3.6843 0.0054 7 6 3.9745 5.0297 0.0111 8 8 2.9864 6.0620 0.0166 9 6 4.0567 2.5225 -0.0006 10 7 5.4530 2.6003 -0.0007 11 6 6.1831 1.6116 -0.5540 12 8 5.6327 0.6151 -0.9799 13 6 7.6540 1.7366 -0.6372 14 6 8.2876 2.8862 -0.1522 15 6 9.6637 3.0081 -0.2222 16 6 10.4253 2.0045 -0.7796 17 6 9.8052 0.8432 -1.2774 18 6 10.5844 -0.1892 -1.8497 19 1 11.5298 0.0437 -2.3172 20 6 10.1305 -1.5123 -1.8102 21 7 9.1185 -1.8340 -1.0460 22 14 10.9694 -2.8190 -2.8485 23 1 12.3990 -2.9184 -2.4588 24 1 10.3047 -4.1284 -2.6282 25 1 10.8721 -2.4490 -4.2834 26 6 8.4080 0.7147 -1.2026 27 6 3.4297 1.2839 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2117 2.3182 0.0005 32 1 1.3256 4.5116 0.0019 33 1 4.5975 5.1183 0.9011 34 1 4.5963 5.1265 -0.8789 35 1 3.3527 6.9569 0.0208 36 1 5.8961 3.3659 0.3975 37 1 7.6994 3.6806 0.2828 38 1 10.1437 3.8976 0.1583 39 1 11.4989 2.1088 -0.8340 40 1 8.8036 -2.7511 -1.0189 41 1 7.9229 -0.1726 -1.5816 42 1 4.0193 0.3791 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188682298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:27 Heat of formation + Delta-G solvation = -72.109180 kcal Electronic energy + Delta-G solvation = -26762.953926 eV Core-core repulsion = 22866.159561 eV Total energy + Delta-G solvation = -3896.794365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.63003 -39.32905 -38.00938 -37.14672 -36.23642 -34.31146 -33.70718 -31.04298 -30.71218 -29.57439 -29.21607 -27.45430 -25.50964 -25.33390 -23.66600 -22.02897 -21.15519 -20.81339 -19.65604 -18.56804 -17.78469 -17.45686 -16.23184 -16.13982 -15.76638 -15.60589 -15.46846 -15.20820 -15.04687 -14.73059 -14.45251 -13.99845 -13.63690 -13.35028 -13.22308 -12.78042 -12.77114 -12.59171 -12.56975 -12.28498 -11.74355 -11.40081 -11.22940 -11.20633 -11.15538 -11.02591 -10.81961 -10.56336 -10.33972 -10.10098 -9.99225 -9.79382 -9.30522 -9.07114 -8.20396 -7.87839 -7.67398 -7.58073 -6.81347 -4.49620 1.33263 1.54279 2.10834 2.75163 3.05688 3.07359 3.11003 3.14288 3.54361 3.61067 3.88739 3.93641 4.04332 4.58446 4.85711 4.93815 5.05089 5.07831 5.13602 5.20776 5.34522 5.38435 5.42333 5.48861 5.50689 5.78473 5.95507 6.08641 6.15089 6.27679 6.40128 6.52653 6.58176 6.63505 6.88503 6.91509 7.02655 7.14861 7.27802 7.42755 7.52013 7.56784 7.61868 7.78633 7.91616 8.09105 8.42079 8.65511 8.74374 8.76118 10.12782 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.003341 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.495853 B = 8378.495094 C =10313.302439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.146 3.854 4 C -0.238 4.238 5 C -0.038 4.038 6 C -0.170 4.170 7 C 0.126 3.874 8 O -0.568 6.568 9 C 0.207 3.793 10 N -0.675 5.675 11 C 0.564 3.436 12 O -0.515 6.515 13 C -0.132 4.132 14 C -0.216 4.216 15 C -0.097 4.097 16 C -0.206 4.206 17 C 0.099 3.901 18 C -0.459 4.459 19 H 0.081 0.919 20 C 0.071 3.929 21 N -0.789 5.789 22 Si 0.914 3.086 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.082 4.082 27 C -0.168 4.168 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.381 0.619 36 H 0.410 0.590 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.286 0.714 41 H 0.137 0.863 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.554 9.614 3.087 16.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.100 3.900 4 C -0.257 4.257 5 C -0.056 4.056 6 C -0.173 4.173 7 C 0.049 3.951 8 O -0.374 6.374 9 C 0.110 3.890 10 N -0.320 5.320 11 C 0.356 3.644 12 O -0.391 6.391 13 C -0.135 4.135 14 C -0.237 4.237 15 C -0.116 4.116 16 C -0.226 4.226 17 C 0.096 3.904 18 C -0.488 4.488 19 H 0.099 0.901 20 C -0.147 4.147 21 N -0.413 5.413 22 Si 0.738 3.262 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.102 4.102 27 C -0.188 4.188 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.229 0.771 36 H 0.248 0.752 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.155 0.845 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.308 7.944 2.833 15.756 hybrid contribution 0.698 0.414 -0.110 0.819 sum -12.611 8.358 2.724 15.372 Atomic orbital electron populations 1.23026 0.78766 1.03687 1.01170 1.86107 1.21008 1.27000 1.88548 1.18852 0.91905 0.84009 0.95218 1.21148 0.99749 0.92247 1.12587 1.20447 0.93074 0.97010 0.95105 1.19263 0.94207 0.92321 1.11496 1.20675 0.89427 0.85043 0.99989 1.86410 1.35590 1.17617 1.97776 1.17185 0.82830 0.92284 0.96692 1.43651 1.03707 1.25469 1.59125 1.19068 0.88230 0.81430 0.75626 1.90677 1.72510 1.29206 1.46720 1.19356 0.89339 0.97831 1.06979 1.20319 0.94663 0.97587 1.11087 1.20437 0.93379 0.97734 1.00013 1.21168 0.97955 0.97249 1.06253 1.17607 0.91450 0.91845 0.89487 1.19570 1.05518 0.90990 1.32758 0.90073 1.25960 0.94535 1.00171 0.94057 1.69736 1.21296 1.21078 1.29235 0.86265 0.79970 0.79003 0.80936 1.18972 1.20177 1.18742 1.21713 0.93479 0.97053 0.97963 1.20741 0.91682 0.98947 1.07476 0.92763 0.88433 0.92790 0.85714 0.84758 0.92831 0.92331 0.77150 0.75235 0.89329 0.88702 0.88417 0.90310 0.84494 0.82029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.72 10.49 -19.42 -0.20 -4.92 16 3 C 0.15 2.33 6.68 -39.24 -0.26 2.06 16 4 C -0.24 -3.18 9.04 -39.39 -0.36 -3.54 16 5 C -0.04 -0.51 9.37 -39.64 -0.37 -0.88 16 6 C -0.17 -2.42 5.90 -104.40 -0.62 -3.03 16 7 C 0.13 1.39 6.43 36.01 0.23 1.63 16 8 O -0.57 -5.58 12.13 -35.23 -0.43 -6.01 16 9 C 0.21 3.46 6.39 -83.74 -0.54 2.93 16 10 N -0.67 -11.46 5.07 -10.73 -0.05 -11.51 16 11 C 0.56 12.07 7.65 -12.32 -0.09 11.98 16 12 O -0.52 -12.53 13.37 5.32 0.07 -12.46 16 13 C -0.13 -3.00 5.87 -105.04 -0.62 -3.61 16 14 C -0.22 -4.31 9.55 -38.91 -0.37 -4.68 16 15 C -0.10 -1.97 10.01 -39.72 -0.40 -2.37 16 16 C -0.21 -4.72 9.78 -38.81 -0.38 -5.10 16 17 C 0.10 2.53 5.55 -106.87 -0.59 1.94 16 18 C -0.46 -11.78 9.06 -37.73 -0.34 -12.13 16 19 H 0.08 1.97 7.88 -52.49 -0.41 1.55 16 20 C 0.07 1.77 5.23 -17.34 -0.09 1.68 16 21 N -0.79 -20.57 10.86 55.55 0.60 -19.96 16 22 Si 0.91 18.56 29.58 -169.99 -5.03 13.53 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 26 C -0.08 -2.12 8.21 -38.44 -0.32 -2.44 16 27 C -0.17 -3.06 8.70 -39.24 -0.34 -3.40 16 28 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.13 1.31 6.29 -52.49 -0.33 0.98 16 32 H 0.13 1.61 7.00 -52.49 -0.37 1.24 16 33 H 0.05 0.51 7.86 -51.93 -0.41 0.10 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.38 1.88 9.12 45.56 0.42 2.30 16 36 H 0.41 5.76 5.77 -40.82 -0.24 5.52 16 37 H 0.09 1.41 6.39 -52.49 -0.34 1.08 16 38 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 40 H 0.29 6.90 8.30 -40.82 -0.34 6.56 16 41 H 0.14 3.85 5.78 -52.49 -0.30 3.54 16 42 H 0.16 3.40 5.70 -52.49 -0.30 3.10 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -31.07 353.85 -8.06 -39.13 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -3.90 Total: 14.56 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -4.46 Total: -17.69 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.55 Total: -31.48 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.56 Total: -23.39 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.07 -8.06 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.975 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds