Wall clock time and date at job start Tue Mar 31 2020 14:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35897 * 116.99990 * 2 1 4 4 C 1.38819 * 120.01884 * 0.02562 * 3 2 1 5 5 C 1.38170 * 120.08876 * 179.97438 * 4 3 2 6 6 C 1.38159 * 120.12948 * 359.79286 * 5 4 3 7 7 C 1.50703 * 119.98262 * 180.22632 * 6 5 4 8 8 O 1.42899 * 109.47019 * 0.23530 * 7 6 5 9 9 C 1.38907 * 120.03330 * 0.46796 * 6 5 4 10 10 N 1.39849 * 120.04126 * 179.78800 * 9 6 5 11 11 C 1.34781 * 119.99861 * 208.00814 * 10 9 6 12 12 O 1.21553 * 119.99982 * 355.53326 * 11 10 9 13 13 C 1.47857 * 119.99598 * 175.81465 * 11 10 9 14 14 C 1.39934 * 120.02754 * 359.44259 * 13 11 10 15 15 C 1.38324 * 120.35444 * 179.76477 * 14 13 11 16 16 C 1.37760 * 120.41376 * 0.52129 * 15 14 13 17 17 C 1.40747 * 120.04095 * 359.73643 * 16 15 14 18 18 C 1.41439 * 120.17783 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99673 * 332.11562 * 18 17 16 20 20 C 1.39937 * 119.99959 * 152.11008 * 18 17 16 21 21 N 1.30826 * 119.99970 * 347.75230 * 20 18 17 22 22 Si 1.86805 * 119.99904 * 167.75044 * 20 18 17 23 23 H 1.48501 * 109.46939 * 60.00431 * 22 20 18 24 24 H 1.48494 * 109.47127 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47073 * 300.00498 * 22 20 18 26 26 C 1.39013 * 120.02207 * 179.72893 * 13 11 10 27 27 C 1.38575 * 120.02315 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47576 * 59.99890 * 1 2 3 29 29 H 1.09005 * 109.46759 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46871 * 299.99260 * 1 2 3 31 31 H 1.07999 * 119.94982 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.93502 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.46628 * 120.23440 * 7 6 5 34 34 H 1.09003 * 109.46899 * 240.23490 * 7 6 5 35 35 H 0.96702 * 113.99502 * 179.97438 * 8 7 6 36 36 H 0.96999 * 119.99902 * 28.01345 * 10 9 6 37 37 H 1.08002 * 119.81863 * 0.02562 * 14 13 11 38 38 H 1.08001 * 119.79231 * 180.23723 * 15 14 13 39 39 H 1.07996 * 119.97616 * 179.76413 * 16 15 14 40 40 H 0.96999 * 119.99852 * 179.97438 * 21 20 18 41 41 H 1.07998 * 120.20418 * 359.94687 * 26 13 11 42 42 H 1.07999 * 120.06453 * 0.04161 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 0.0005 5 6 1.9160 3.6072 0.0011 6 6 3.2954 3.6843 0.0054 7 6 3.9745 5.0297 0.0111 8 8 2.9864 6.0620 0.0166 9 6 4.0567 2.5225 -0.0006 10 7 5.4530 2.6003 -0.0007 11 6 6.1831 1.6116 -0.5540 12 8 5.6327 0.6151 -0.9799 13 6 7.6540 1.7366 -0.6372 14 6 8.2876 2.8862 -0.1522 15 6 9.6637 3.0081 -0.2222 16 6 10.4253 2.0045 -0.7796 17 6 9.8052 0.8432 -1.2774 18 6 10.5844 -0.1892 -1.8497 19 1 11.5298 0.0437 -2.3172 20 6 10.1305 -1.5123 -1.8102 21 7 9.1185 -1.8340 -1.0460 22 14 10.9694 -2.8190 -2.8485 23 1 12.3990 -2.9184 -2.4588 24 1 10.3047 -4.1284 -2.6282 25 1 10.8721 -2.4490 -4.2834 26 6 8.4080 0.7147 -1.2026 27 6 3.4297 1.2839 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2117 2.3182 0.0005 32 1 1.3256 4.5116 0.0019 33 1 4.5975 5.1183 0.9011 34 1 4.5963 5.1265 -0.8789 35 1 3.3527 6.9569 0.0208 36 1 5.8961 3.3659 0.3975 37 1 7.6994 3.6806 0.2828 38 1 10.1437 3.8976 0.1583 39 1 11.4989 2.1088 -0.8340 40 1 8.8036 -2.7511 -1.0189 41 1 7.9229 -0.1726 -1.5816 42 1 4.0193 0.3791 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188682298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:26 Heat of formation + Delta-G solvation = -93.642231 kcal Electronic energy + Delta-G solvation = -26763.887669 eV Core-core repulsion = 22866.159561 eV Total energy + Delta-G solvation = -3897.728108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.96954 -40.67151 -39.27656 -38.67053 -37.18490 -35.84636 -35.41155 -32.41097 -32.05227 -31.33480 -30.55580 -28.37664 -27.23413 -26.37415 -25.18261 -23.41177 -22.83337 -22.04693 -21.25906 -19.87267 -19.34348 -18.38389 -17.80282 -17.48510 -16.88289 -16.80621 -16.63647 -16.57765 -16.42888 -16.09531 -15.71645 -15.59040 -15.13762 -14.74754 -14.51037 -14.41110 -14.29605 -13.71898 -13.68432 -13.47824 -13.23394 -12.94405 -12.81994 -12.57391 -12.38934 -12.23372 -12.20125 -12.09529 -11.79701 -11.54925 -11.37960 -11.11558 -11.04368 -10.71465 -9.63680 -9.40369 -9.37971 -8.93770 -8.63660 -6.41824 0.00495 0.36954 0.48954 0.99423 1.36062 1.47013 1.49281 1.87803 1.97831 2.18921 2.40931 2.68154 2.80294 3.26123 3.65680 3.79043 3.90127 3.99752 4.10063 4.25530 4.30604 4.38719 4.40023 4.49702 4.54758 4.55112 4.62969 4.69046 4.78097 4.89110 5.05729 5.12063 5.16068 5.27695 5.30497 5.37135 5.43598 5.48326 5.77854 5.81888 5.87822 6.03377 6.25138 6.37800 6.44317 6.59059 6.86860 6.91915 6.95222 7.08722 8.31894 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.003341 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.495853 B = 8378.495094 C =10313.302439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.343 6.343 3 C 0.134 3.866 4 C -0.223 4.223 5 C -0.037 4.037 6 C -0.164 4.164 7 C 0.128 3.872 8 O -0.577 6.577 9 C 0.185 3.815 10 N -0.652 5.652 11 C 0.561 3.439 12 O -0.557 6.557 13 C -0.141 4.141 14 C -0.191 4.191 15 C -0.095 4.095 16 C -0.209 4.209 17 C 0.066 3.934 18 C -0.498 4.498 19 H 0.085 0.915 20 C 0.027 3.973 21 N -0.833 5.833 22 Si 0.984 3.016 23 H -0.252 1.252 24 H -0.274 1.274 25 H -0.260 1.260 26 C -0.121 4.121 27 C -0.201 4.201 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.404 0.596 36 H 0.425 0.575 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.111 0.889 40 H 0.285 0.715 41 H 0.100 0.900 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.692 13.325 3.919 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.088 3.912 4 C -0.242 4.242 5 C -0.055 4.055 6 C -0.167 4.167 7 C 0.050 3.950 8 O -0.387 6.387 9 C 0.089 3.911 10 N -0.298 5.298 11 C 0.353 3.647 12 O -0.436 6.436 13 C -0.144 4.144 14 C -0.211 4.211 15 C -0.113 4.113 16 C -0.228 4.228 17 C 0.064 3.936 18 C -0.527 4.527 19 H 0.103 0.897 20 C -0.187 4.187 21 N -0.459 5.459 22 Si 0.804 3.196 23 H -0.176 1.176 24 H -0.199 1.199 25 H -0.185 1.185 26 C -0.142 4.142 27 C -0.222 4.222 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.091 0.909 31 H 0.176 0.824 32 H 0.176 0.824 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.255 0.745 36 H 0.266 0.734 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.456 11.733 3.691 18.980 hybrid contribution 0.845 -0.504 -0.267 1.020 sum -13.610 11.228 3.424 17.973 Atomic orbital electron populations 1.23391 0.75990 1.05557 1.02671 1.86075 1.23981 1.27146 1.88543 1.18934 0.91317 0.85328 0.95606 1.21493 1.01287 0.91153 1.10244 1.20813 0.92981 0.97767 0.93957 1.19613 0.94607 0.93001 1.09497 1.20646 0.89399 0.83717 1.01214 1.86340 1.35675 1.18861 1.97795 1.17283 0.82401 0.92812 0.98564 1.43250 1.03983 1.24554 1.58014 1.18983 0.88093 0.81804 0.75810 1.90679 1.73109 1.31116 1.48693 1.19620 0.90154 0.98167 1.06504 1.20888 0.95239 0.97027 1.07906 1.20953 0.93409 0.98438 0.98483 1.21499 0.99084 0.96793 1.05456 1.17940 0.91581 0.93341 0.90717 1.19854 1.06252 0.91989 1.34636 0.89689 1.26836 0.94942 1.02167 0.94722 1.69864 1.23333 1.21310 1.31381 0.85220 0.79280 0.76053 0.79010 1.17611 1.19921 1.18452 1.21489 0.94154 0.97490 1.01059 1.20613 0.93043 0.98381 1.10207 0.91388 0.86655 0.90927 0.82352 0.82398 0.90621 0.91871 0.74481 0.73398 0.84209 0.83833 0.87049 0.90479 0.88251 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -10.54 10.49 -92.39 -0.97 -11.51 16 3 C 0.13 4.31 6.68 22.49 0.15 4.46 16 4 C -0.22 -5.44 9.04 22.39 0.20 -5.24 16 5 C -0.04 -0.87 9.37 22.23 0.21 -0.66 16 6 C -0.16 -4.27 5.90 -19.72 -0.12 -4.39 16 7 C 0.13 2.31 6.43 71.24 0.46 2.77 16 8 O -0.58 -8.70 12.13 -148.98 -1.81 -10.51 16 9 C 0.19 6.16 6.39 38.16 0.24 6.40 16 10 N -0.65 -21.78 5.07 -306.12 -1.55 -23.34 16 11 C 0.56 24.96 7.65 86.79 0.66 25.62 16 12 O -0.56 -29.45 13.37 -3.88 -0.05 -29.50 16 13 C -0.14 -6.54 5.87 -20.13 -0.12 -6.66 16 14 C -0.19 -7.08 9.55 22.70 0.22 -6.86 16 15 C -0.09 -3.54 10.01 22.18 0.22 -3.32 16 16 C -0.21 -9.40 9.78 22.77 0.22 -9.18 16 17 C 0.07 3.55 5.55 -21.32 -0.12 3.44 16 18 C -0.50 -26.91 9.06 23.47 0.21 -26.70 16 19 H 0.09 4.30 7.88 -2.91 -0.02 4.28 16 20 C 0.03 1.43 5.23 85.25 0.45 1.87 16 21 N -0.83 -46.93 10.86 21.82 0.24 -46.70 16 22 Si 0.98 39.96 29.58 68.60 2.03 41.98 16 23 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 C -0.12 -6.68 8.21 23.01 0.19 -6.49 16 27 C -0.20 -7.74 8.70 22.49 0.20 -7.54 16 28 H 0.07 1.01 7.66 -2.39 -0.02 0.99 16 29 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.07 1.01 7.66 -2.38 -0.02 0.99 16 31 H 0.16 2.72 6.29 -2.91 -0.02 2.70 16 32 H 0.16 3.06 7.00 -2.91 -0.02 3.04 16 33 H 0.08 1.06 7.86 -2.39 -0.02 1.04 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.40 2.07 9.12 -74.06 -0.68 1.40 16 36 H 0.43 10.74 5.77 -92.71 -0.54 10.21 16 37 H 0.14 3.70 6.39 -2.91 -0.02 3.69 16 38 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 39 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 40 H 0.28 14.96 8.30 -92.71 -0.77 14.19 16 41 H 0.10 6.16 5.78 -2.91 -0.02 6.15 16 42 H 0.12 5.61 5.70 -2.91 -0.02 5.59 16 Total: -1.00 -75.95 353.85 2.16 -73.79 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: -0.11 Total: 36.83 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 4.39 Total: -31.05 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -1.32 Total: -70.03 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -2.83 Total: -51.52 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.98 kcal Total: -75.95 2.16 -73.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.853 kcal (2) G-P(sol) polarization free energy of solvation -75.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds