Wall clock time and date at job start Tue Mar 31 2020 14:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00148 * 2 1 4 4 O 1.42902 * 109.47208 * 74.99842 * 3 2 1 5 5 C 1.35710 * 116.99606 * 75.00275 * 4 3 2 6 6 C 1.39002 * 119.90719 * 180.02562 * 5 4 3 7 7 C 1.37700 * 120.09070 * 180.02562 * 6 5 4 8 8 C 1.39753 * 119.90861 * 0.22195 * 7 6 5 9 9 C 1.47571 * 120.08614 * 179.75194 * 8 7 6 10 10 O 1.21594 * 120.00221 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99590 * 180.02562 * 9 8 7 12 12 C 1.39865 * 119.99898 * 174.86240 * 11 9 8 13 13 C 1.39309 * 119.94996 * 146.35122 * 12 11 9 14 14 C 1.38483 * 120.42654 * 179.97438 * 13 12 11 15 15 C 1.37689 * 120.32444 * 0.02562 * 14 13 12 16 16 C 1.40741 * 119.88883 * 0.02562 * 15 14 13 17 17 C 1.41412 * 120.20924 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99818 * 151.80445 * 17 16 15 19 19 C 1.39925 * 119.99988 * 331.80044 * 17 16 15 20 20 N 1.30832 * 120.00414 * 348.99095 * 19 17 16 21 21 Si 1.86806 * 120.00011 * 168.98583 * 19 17 16 22 22 H 1.48505 * 109.46796 * 90.00325 * 21 19 17 23 23 H 1.48500 * 109.47288 * 210.00165 * 21 19 17 24 24 H 1.48498 * 109.46948 * 330.00452 * 21 19 17 25 25 C 1.38263 * 119.94865 * 326.07558 * 12 11 9 26 26 C 1.39743 * 119.81864 * 359.50060 * 8 7 6 27 27 C 1.37700 * 119.91059 * 0.52859 * 26 8 7 28 28 H 1.08995 * 109.47732 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47100 * 300.00198 * 1 2 3 30 30 H 1.09007 * 109.47178 * 59.99910 * 1 2 3 31 31 H 1.09001 * 109.46917 * 314.99764 * 3 2 1 32 32 H 1.09005 * 109.46880 * 194.99603 * 3 2 1 33 33 H 1.07998 * 119.95588 * 0.02562 * 6 5 4 34 34 H 1.07997 * 120.04590 * 179.97438 * 7 6 5 35 35 H 0.96994 * 119.99974 * 354.86675 * 11 9 8 36 36 H 1.07991 * 119.78500 * 359.97438 * 13 12 11 37 37 H 1.07998 * 119.83798 * 180.02562 * 14 13 12 38 38 H 1.07995 * 120.05362 * 179.97438 * 15 14 13 39 39 H 0.96994 * 120.00463 * 179.97438 * 20 19 17 40 40 H 1.08005 * 120.15952 * 0.02562 * 25 12 11 41 41 H 1.08005 * 120.04429 * 180.22385 * 26 8 7 42 42 H 1.07998 * 119.95163 * 179.70831 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8825 1.3014 5 6 2.7176 1.4138 2.2655 6 6 2.6477 1.9321 3.5533 7 6 3.4906 1.4597 4.5343 8 6 4.4205 0.4610 4.2325 9 6 5.3295 -0.0443 5.2795 10 8 5.2704 0.4086 6.4064 11 7 6.2259 -1.0071 4.9863 12 6 7.1587 -1.4102 5.9474 13 6 7.5798 -2.7373 5.9941 14 6 8.5033 -3.1471 6.9412 15 6 9.0153 -2.2465 7.8481 16 6 8.5985 -0.9027 7.8137 17 6 9.1196 0.0279 8.7423 18 1 9.1880 1.0731 8.4788 19 6 9.5464 -0.4053 10.0024 20 7 9.2699 -1.6190 10.4053 21 14 10.5114 0.7491 11.1095 22 1 9.5706 1.5147 11.9663 23 1 11.4309 -0.0410 11.9672 24 1 11.2997 1.6912 10.2752 25 6 7.6657 -0.4898 6.8459 26 6 4.4836 -0.0615 2.9380 27 6 3.6375 0.4168 1.9625 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.4942 1.9329 -0.7267 32 1 3.0649 1.2336 -0.2659 33 1 1.9313 2.7064 3.7849 34 1 3.4360 1.8632 5.5346 35 1 6.2242 -1.4203 4.1088 36 1 7.1835 -3.4511 5.2872 37 1 8.8234 -4.1782 6.9686 38 1 9.7350 -2.5709 8.5851 39 1 9.5661 -1.9194 11.2786 40 1 7.3429 0.5402 6.8079 41 1 5.1983 -0.8359 2.7016 42 1 3.6888 0.0168 0.9607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191273921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:32 Heat of formation + Delta-G solvation = -69.131419 kcal Electronic energy + Delta-G solvation = -26042.443661 eV Core-core repulsion = 22145.778421 eV Total energy + Delta-G solvation = -3896.665240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.72534 -39.73899 -38.18696 -37.15542 -36.44484 -34.46040 -33.04299 -31.28765 -30.51185 -29.77494 -28.32510 -27.77141 -25.79940 -25.25480 -23.55556 -22.73951 -21.31881 -20.79588 -19.64290 -18.84915 -17.92622 -17.38180 -17.12010 -17.02990 -15.89167 -15.50214 -15.20914 -14.83026 -14.77273 -14.69071 -14.44800 -14.13185 -13.96167 -13.66270 -13.55881 -13.02763 -12.89193 -12.58828 -12.41264 -12.06319 -11.82787 -11.70651 -11.50630 -11.26639 -11.12713 -11.05211 -10.64021 -10.59277 -10.46846 -10.10608 -9.71275 -9.46999 -9.22252 -9.13334 -8.84288 -8.46577 -7.38055 -6.85104 -6.62235 -4.30427 0.84769 1.19234 2.70794 2.79741 2.88529 3.12829 3.16581 3.17794 3.24213 3.34180 3.64580 3.96853 4.02261 4.42270 4.52410 4.59303 4.72095 4.79182 4.85272 4.94406 4.97993 5.10651 5.23415 5.26097 5.48027 5.74777 5.79854 5.92878 6.08882 6.25422 6.30549 6.32529 6.41744 6.50536 6.79869 7.03598 7.06373 7.08969 7.12190 7.31497 7.60088 7.76569 8.00738 8.13237 8.21063 8.31347 8.67485 8.77185 8.99057 9.02608 10.31129 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.002263 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.840320 B =12372.518981 C =13151.090776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.394 6.394 3 C 0.210 3.790 4 O -0.330 6.330 5 C 0.146 3.854 6 C -0.158 4.158 7 C -0.024 4.024 8 C -0.159 4.159 9 C 0.549 3.451 10 O -0.512 6.512 11 N -0.664 5.664 12 C 0.150 3.850 13 C -0.258 4.258 14 C -0.094 4.094 15 C -0.167 4.167 16 C 0.118 3.882 17 C -0.457 4.457 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.801 5.801 21 Si 0.911 3.089 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.207 4.207 26 C -0.049 4.049 27 C -0.203 4.203 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.136 0.864 34 H 0.145 0.855 35 H 0.396 0.604 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.279 0.721 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.450 3.918 -19.777 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.313 6.313 3 C 0.096 3.904 4 O -0.245 6.245 5 C 0.101 3.899 6 C -0.177 4.177 7 C -0.043 4.043 8 C -0.163 4.163 9 C 0.336 3.664 10 O -0.388 6.388 11 N -0.308 5.308 12 C 0.058 3.942 13 C -0.280 4.280 14 C -0.113 4.113 15 C -0.187 4.187 16 C 0.115 3.885 17 C -0.487 4.487 18 H 0.094 0.906 19 C -0.144 4.144 20 N -0.428 5.428 21 Si 0.736 3.264 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.228 4.228 26 C -0.068 4.068 27 C -0.222 4.222 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.153 0.847 34 H 0.163 0.837 35 H 0.231 0.769 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.140 0.860 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.148 0.852 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.517 4.095 -18.768 23.488 hybrid contribution 0.189 0.179 -0.086 0.274 sum -13.328 4.274 -18.854 23.481 Atomic orbital electron populations 1.22851 0.80012 1.03288 1.00610 1.88069 1.21256 1.28393 1.93588 1.24253 1.00089 0.83478 0.82541 1.86194 1.57499 1.60467 1.20360 1.19166 0.89182 0.92835 0.88752 1.20410 1.03196 1.03894 0.90161 1.21127 0.90971 0.92665 0.99495 1.20011 1.00704 1.01383 0.94163 1.18162 0.80284 0.80145 0.87795 1.90848 1.69230 1.57339 1.21385 1.43354 1.32590 1.38793 1.16051 1.17420 0.91384 0.93257 0.92121 1.20060 1.09027 0.93040 1.05838 1.20480 0.97546 0.97653 0.95649 1.21411 1.03153 0.94094 1.00039 1.17514 0.88179 0.92713 0.90103 1.19533 1.36059 0.95576 0.97515 0.90565 1.25883 0.94233 0.95579 0.98657 1.69802 1.36087 1.17554 1.19318 0.86270 0.79841 0.80618 0.79699 1.19531 1.20209 1.18578 1.21001 1.01820 0.98333 1.01650 1.21127 0.96739 0.97321 0.91619 1.21171 0.99299 1.00645 1.01055 0.89284 0.93102 0.93629 0.87627 0.87770 0.84651 0.83736 0.76878 0.89282 0.88999 0.86045 0.91050 0.87495 0.85248 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.89 101.05 1.10 1.27 16 2 O -0.39 -3.20 10.18 -59.04 -0.60 -3.80 16 3 C 0.21 1.37 6.39 101.05 0.65 2.02 16 4 O -0.33 -3.12 10.18 -42.65 -0.43 -3.56 16 5 C 0.15 1.60 6.64 -39.02 -0.26 1.34 16 6 C -0.16 -1.82 9.97 -39.50 -0.39 -2.21 16 7 C -0.02 -0.32 9.59 -39.21 -0.38 -0.70 16 8 C -0.16 -2.36 5.87 -104.96 -0.62 -2.98 16 9 C 0.55 10.52 7.49 -12.45 -0.09 10.43 16 10 O -0.51 -12.08 14.05 5.28 0.07 -12.01 16 11 N -0.66 -12.39 5.28 -10.84 -0.06 -12.44 16 12 C 0.15 3.48 6.26 -83.78 -0.52 2.95 16 13 C -0.26 -5.79 9.97 -39.09 -0.39 -6.18 16 14 C -0.09 -2.24 10.02 -39.69 -0.40 -2.63 16 15 C -0.17 -4.46 8.66 -38.84 -0.34 -4.80 16 16 C 0.12 3.30 5.55 -106.85 -0.59 2.71 16 17 C -0.46 -12.74 9.06 -37.74 -0.34 -13.08 16 18 H 0.08 2.06 7.87 -52.48 -0.41 1.65 16 19 C 0.07 1.91 5.25 -17.35 -0.09 1.82 16 20 N -0.80 -21.52 10.81 55.55 0.60 -20.92 16 21 Si 0.91 19.51 29.57 -169.99 -5.03 14.49 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 25 C -0.21 -5.47 8.39 -38.68 -0.32 -5.80 16 26 C -0.05 -0.58 9.53 -39.22 -0.37 -0.96 16 27 C -0.20 -2.14 8.76 -39.50 -0.35 -2.49 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.33 8.03 -51.93 -0.42 -0.09 16 30 H 0.05 0.18 8.11 -51.92 -0.42 -0.24 16 31 H 0.11 0.40 8.01 -51.93 -0.42 -0.01 16 32 H 0.10 0.54 6.68 -51.93 -0.35 0.20 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.14 1.99 7.64 -52.49 -0.40 1.59 16 35 H 0.40 5.72 6.85 -40.82 -0.28 5.44 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 38 H 0.12 3.32 6.18 -52.49 -0.32 2.99 16 39 H 0.28 6.80 8.30 -40.82 -0.34 6.47 16 40 H 0.11 2.91 6.44 -52.48 -0.34 2.58 16 41 H 0.13 1.25 6.41 -52.48 -0.34 0.91 16 42 H 0.14 1.17 5.83 -52.49 -0.31 0.86 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -33.31 358.35 -8.58 -41.90 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.83 Total: 10.23 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -3.71 Total: -19.28 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.54 Total: -33.37 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.96 Total: -19.36 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.31 -8.58 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191273921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.235 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds