Wall clock time and date at job start Tue Mar 31 2020 14:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00148 * 2 1 4 4 O 1.42902 * 109.47208 * 74.99842 * 3 2 1 5 5 C 1.35710 * 116.99606 * 75.00275 * 4 3 2 6 6 C 1.39002 * 119.90719 * 180.02562 * 5 4 3 7 7 C 1.37700 * 120.09070 * 180.02562 * 6 5 4 8 8 C 1.39753 * 119.90861 * 0.22195 * 7 6 5 9 9 C 1.47571 * 120.08614 * 179.75194 * 8 7 6 10 10 O 1.21594 * 120.00221 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99590 * 180.02562 * 9 8 7 12 12 C 1.39865 * 119.99898 * 174.86240 * 11 9 8 13 13 C 1.39309 * 119.94996 * 146.35122 * 12 11 9 14 14 C 1.38483 * 120.42654 * 179.97438 * 13 12 11 15 15 C 1.37689 * 120.32444 * 0.02562 * 14 13 12 16 16 C 1.40741 * 119.88883 * 0.02562 * 15 14 13 17 17 C 1.41412 * 120.20924 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99818 * 151.80445 * 17 16 15 19 19 C 1.39925 * 119.99988 * 331.80044 * 17 16 15 20 20 N 1.30832 * 120.00414 * 348.99095 * 19 17 16 21 21 Si 1.86806 * 120.00011 * 168.98583 * 19 17 16 22 22 H 1.48505 * 109.46796 * 90.00325 * 21 19 17 23 23 H 1.48500 * 109.47288 * 210.00165 * 21 19 17 24 24 H 1.48498 * 109.46948 * 330.00452 * 21 19 17 25 25 C 1.38263 * 119.94865 * 326.07558 * 12 11 9 26 26 C 1.39743 * 119.81864 * 359.50060 * 8 7 6 27 27 C 1.37700 * 119.91059 * 0.52859 * 26 8 7 28 28 H 1.08995 * 109.47732 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47100 * 300.00198 * 1 2 3 30 30 H 1.09007 * 109.47178 * 59.99910 * 1 2 3 31 31 H 1.09001 * 109.46917 * 314.99764 * 3 2 1 32 32 H 1.09005 * 109.46880 * 194.99603 * 3 2 1 33 33 H 1.07998 * 119.95588 * 0.02562 * 6 5 4 34 34 H 1.07997 * 120.04590 * 179.97438 * 7 6 5 35 35 H 0.96994 * 119.99974 * 354.86675 * 11 9 8 36 36 H 1.07991 * 119.78500 * 359.97438 * 13 12 11 37 37 H 1.07998 * 119.83798 * 180.02562 * 14 13 12 38 38 H 1.07995 * 120.05362 * 179.97438 * 15 14 13 39 39 H 0.96994 * 120.00463 * 179.97438 * 20 19 17 40 40 H 1.08005 * 120.15952 * 0.02562 * 25 12 11 41 41 H 1.08005 * 120.04429 * 180.22385 * 26 8 7 42 42 H 1.07998 * 119.95163 * 179.70831 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8825 1.3014 5 6 2.7176 1.4138 2.2655 6 6 2.6477 1.9321 3.5533 7 6 3.4906 1.4597 4.5343 8 6 4.4205 0.4610 4.2325 9 6 5.3295 -0.0443 5.2795 10 8 5.2704 0.4086 6.4064 11 7 6.2259 -1.0071 4.9863 12 6 7.1587 -1.4102 5.9474 13 6 7.5798 -2.7373 5.9941 14 6 8.5033 -3.1471 6.9412 15 6 9.0153 -2.2465 7.8481 16 6 8.5985 -0.9027 7.8137 17 6 9.1196 0.0279 8.7423 18 1 9.1880 1.0731 8.4788 19 6 9.5464 -0.4053 10.0024 20 7 9.2699 -1.6190 10.4053 21 14 10.5114 0.7491 11.1095 22 1 9.5706 1.5147 11.9663 23 1 11.4309 -0.0410 11.9672 24 1 11.2997 1.6912 10.2752 25 6 7.6657 -0.4898 6.8459 26 6 4.4836 -0.0615 2.9380 27 6 3.6375 0.4168 1.9625 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.4942 1.9329 -0.7267 32 1 3.0649 1.2336 -0.2659 33 1 1.9313 2.7064 3.7849 34 1 3.4360 1.8632 5.5346 35 1 6.2242 -1.4203 4.1088 36 1 7.1835 -3.4511 5.2872 37 1 8.8234 -4.1782 6.9686 38 1 9.7350 -2.5709 8.5851 39 1 9.5661 -1.9194 11.2786 40 1 7.3429 0.5402 6.8079 41 1 5.1983 -0.8359 2.7016 42 1 3.6888 0.0168 0.9607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191273921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:31 Heat of formation + Delta-G solvation = -89.810541 kcal Electronic energy + Delta-G solvation = -26043.340375 eV Core-core repulsion = 22145.778421 eV Total energy + Delta-G solvation = -3897.561954 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.73797 -41.00080 -39.32040 -38.59182 -37.32489 -36.25772 -34.88470 -32.28240 -31.76009 -31.60695 -29.68818 -28.59204 -27.27055 -26.42889 -24.71101 -23.76339 -22.94902 -22.51975 -21.20606 -19.82114 -19.41913 -18.65550 -17.90703 -17.84034 -17.35798 -16.86312 -16.48254 -16.47400 -16.08962 -16.04379 -15.55670 -15.19609 -15.01963 -14.81016 -14.69736 -14.44237 -14.29454 -14.02236 -13.66539 -13.56000 -13.11811 -13.04960 -12.83429 -12.59352 -12.53571 -12.24798 -12.21928 -11.98711 -11.80579 -11.59010 -11.27591 -11.15571 -10.97367 -10.66648 -10.14696 -9.43436 -9.37216 -8.71941 -8.57806 -6.38752 -0.21977 0.27743 0.92544 1.01185 1.35887 1.47545 1.51649 1.88209 2.10459 2.17515 2.23263 2.68293 2.76702 2.88032 3.67074 3.68887 3.73999 3.82365 4.05255 4.13601 4.28461 4.34437 4.45684 4.47198 4.51797 4.58260 4.61926 4.87108 4.90118 5.00780 5.03325 5.09582 5.11638 5.16747 5.19032 5.31378 5.36823 5.52691 5.75610 5.83902 5.85219 6.06903 6.11018 6.29956 6.34241 6.60571 6.68638 6.93697 6.99925 7.26646 8.37320 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.002263 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.840320 B =12372.518981 C =13151.090776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.411 6.411 3 C 0.198 3.802 4 O -0.334 6.334 5 C 0.156 3.844 6 C -0.161 4.161 7 C -0.034 4.034 8 C -0.184 4.184 9 C 0.547 3.453 10 O -0.568 6.568 11 N -0.652 5.652 12 C 0.155 3.845 13 C -0.246 4.246 14 C -0.092 4.092 15 C -0.192 4.192 16 C 0.086 3.914 17 C -0.500 4.500 18 H 0.065 0.935 19 C 0.031 3.969 20 N -0.831 5.831 21 Si 0.986 3.014 22 H -0.266 1.266 23 H -0.259 1.259 24 H -0.259 1.259 25 C -0.234 4.234 26 C -0.039 4.039 27 C -0.198 4.198 28 H 0.094 0.906 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.419 0.581 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.288 0.712 40 H 0.084 0.916 41 H 0.154 0.846 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.399 3.204 -22.716 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.331 6.331 3 C 0.086 3.914 4 O -0.249 6.249 5 C 0.110 3.890 6 C -0.179 4.179 7 C -0.053 4.053 8 C -0.188 4.188 9 C 0.338 3.662 10 O -0.448 6.448 11 N -0.298 5.298 12 C 0.062 3.938 13 C -0.267 4.267 14 C -0.111 4.111 15 C -0.212 4.212 16 C 0.083 3.917 17 C -0.530 4.530 18 H 0.083 0.917 19 C -0.183 4.183 20 N -0.458 5.458 21 Si 0.807 3.193 22 H -0.191 1.191 23 H -0.183 1.183 24 H -0.183 1.183 25 C -0.256 4.256 26 C -0.058 4.058 27 C -0.216 4.216 28 H 0.112 0.888 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.138 0.862 33 H 0.170 0.830 34 H 0.147 0.853 35 H 0.259 0.741 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.171 0.829 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.488 3.354 -21.782 26.375 hybrid contribution 0.277 0.376 0.570 0.737 sum -14.211 3.731 -21.212 25.803 Atomic orbital electron populations 1.22982 0.79179 1.03922 1.01177 1.88041 1.22310 1.29225 1.93519 1.24754 1.01608 0.83627 0.81401 1.86225 1.56845 1.60571 1.21252 1.19304 0.88771 0.92044 0.88873 1.20517 1.02992 1.04235 0.90197 1.21092 0.91626 0.92919 0.99622 1.19703 1.01369 1.03397 0.94306 1.18886 0.80202 0.79100 0.88042 1.90820 1.70892 1.58992 1.24074 1.43213 1.31457 1.38880 1.16268 1.17515 0.91167 0.93206 0.91888 1.20507 1.07499 0.93129 1.05577 1.20868 0.96902 0.98718 0.94614 1.21381 1.04245 0.94263 1.01316 1.17869 0.89069 0.93784 0.90946 1.19745 1.38758 0.95334 0.99201 0.91665 1.26756 0.94602 0.97424 0.99484 1.69852 1.36689 1.19111 1.20170 0.85155 0.78337 0.78366 0.77483 1.19144 1.18331 1.18308 1.20961 1.02979 0.98183 1.03455 1.21324 0.97008 0.97211 0.90217 1.21425 0.98294 1.00055 1.01823 0.88770 0.94037 0.91550 0.84631 0.86164 0.82991 0.85254 0.74132 0.84828 0.85656 0.87455 0.90187 0.89768 0.82885 0.81946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.89 113.37 1.23 1.45 16 2 O -0.41 -5.30 10.18 -126.21 -1.28 -6.58 16 3 C 0.20 1.84 6.39 113.37 0.72 2.56 16 4 O -0.33 -5.27 10.18 -67.54 -0.69 -5.96 16 5 C 0.16 3.02 6.64 22.63 0.15 3.17 16 6 C -0.16 -3.52 9.97 22.33 0.22 -3.30 16 7 C -0.03 -0.93 9.59 22.51 0.22 -0.71 16 8 C -0.18 -5.42 5.87 -20.08 -0.12 -5.54 16 9 C 0.55 21.51 7.49 86.71 0.65 22.16 16 10 O -0.57 -28.51 14.05 -4.01 -0.06 -28.56 16 11 N -0.65 -23.94 5.28 -306.46 -1.62 -25.55 16 12 C 0.16 7.24 6.26 38.12 0.24 7.48 16 13 C -0.25 -10.55 9.97 22.59 0.23 -10.33 16 14 C -0.09 -4.29 10.02 22.20 0.22 -4.06 16 15 C -0.19 -10.57 8.66 22.75 0.20 -10.37 16 16 C 0.09 5.09 5.55 -21.31 -0.12 4.97 16 17 C -0.50 -29.69 9.06 23.46 0.21 -29.48 16 18 H 0.07 3.82 7.87 -2.91 -0.02 3.80 16 19 C 0.03 1.67 5.25 85.25 0.45 2.11 16 20 N -0.83 -46.18 10.81 21.82 0.24 -45.95 16 21 Si 0.99 41.23 29.57 68.60 2.03 43.26 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 24 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 25 C -0.23 -13.07 8.39 22.86 0.19 -12.88 16 26 C -0.04 -0.83 9.53 22.51 0.21 -0.61 16 27 C -0.20 -3.51 8.76 22.32 0.20 -3.32 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.04 0.45 8.03 -2.38 -0.02 0.43 16 30 H 0.07 0.32 8.11 -2.38 -0.02 0.30 16 31 H 0.14 0.46 8.01 -2.39 -0.02 0.44 16 32 H 0.12 0.73 6.68 -2.38 -0.02 0.71 16 33 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 34 H 0.13 3.87 7.64 -2.91 -0.02 3.85 16 35 H 0.42 11.08 6.85 -92.71 -0.64 10.44 16 36 H 0.13 4.54 8.06 -2.92 -0.02 4.52 16 37 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 38 H 0.11 6.11 6.18 -2.91 -0.02 6.09 16 39 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 40 H 0.08 4.98 6.44 -2.91 -0.02 4.96 16 41 H 0.15 2.40 6.41 -2.91 -0.02 2.38 16 42 H 0.16 2.05 5.83 -2.91 -0.02 2.03 16 Total: -1.00 -77.76 358.35 4.16 -73.60 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.44 Total: 32.44 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 5.11 Total: -36.69 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -1.38 Total: -71.50 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -2.03 Total: -41.10 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -77.76 4.16 -73.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191273921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.213 kcal (2) G-P(sol) polarization free energy of solvation -77.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds