Wall clock time and date at job start Tue Mar 31 2020 14:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35977 * 116.99965 * 2 1 4 4 C 1.38588 * 120.07297 * 0.27581 * 3 2 1 5 5 C 1.38226 * 119.99585 * 180.25772 * 4 3 2 6 6 C 1.38266 * 120.15487 * 359.73771 * 5 4 3 7 7 C 1.38225 * 120.14519 * 359.97438 * 6 5 4 8 8 C 1.38583 * 120.00444 * 0.02562 * 7 6 5 9 9 O 1.36003 * 120.07830 * 179.97438 * 8 7 6 10 10 C 1.34672 * 116.99942 * 265.92632 * 9 8 7 11 11 O 1.21519 * 120.00030 * 5.30263 * 10 9 8 12 12 N 1.34774 * 119.99642 * 185.30568 * 10 9 8 13 13 C 1.37179 * 120.00432 * 359.97438 * 12 10 9 14 14 H 1.08001 * 119.99399 * 34.03533 * 13 12 10 15 15 C 1.38886 * 120.00007 * 214.04520 * 13 12 10 16 16 N 1.31453 * 120.00527 * 22.06250 * 15 13 12 17 17 Si 1.86800 * 119.99544 * 202.07077 * 15 13 12 18 18 H 1.48498 * 109.47601 * 59.99604 * 17 15 13 19 19 H 1.48504 * 109.47109 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.47142 * 299.99746 * 17 15 13 21 21 C 1.46503 * 119.99731 * 179.72638 * 12 10 9 22 22 C 1.50700 * 109.46874 * 274.79041 * 21 12 10 23 23 C 1.38236 * 120.00294 * 270.53205 * 22 21 12 24 24 C 1.38239 * 120.00025 * 179.76817 * 23 22 21 25 25 C 1.38225 * 120.00013 * 0.50524 * 24 23 22 26 26 C 1.38240 * 120.00188 * 359.74678 * 25 24 23 27 27 C 1.38234 * 119.99823 * 0.02562 * 26 25 24 28 28 H 1.08996 * 109.47104 * 60.00620 * 1 2 3 29 29 H 1.09000 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47609 * 299.99731 * 1 2 3 31 31 H 1.07999 * 120.00393 * 359.97389 * 4 3 2 32 32 H 1.08010 * 119.92112 * 179.76247 * 5 4 3 33 33 H 1.08000 * 119.92796 * 180.02562 * 6 5 4 34 34 H 1.08006 * 119.99993 * 180.02562 * 7 6 5 35 35 H 0.97002 * 120.00445 * 179.97438 * 16 15 13 36 36 H 1.08993 * 109.47342 * 34.79193 * 21 12 10 37 37 H 1.09000 * 109.47343 * 154.79636 * 21 12 10 38 38 H 1.08005 * 120.00026 * 0.02562 * 23 22 21 39 39 H 1.07999 * 119.99559 * 180.23456 * 24 23 22 40 40 H 1.07999 * 120.00182 * 179.72805 * 25 24 23 41 41 H 1.08001 * 120.00487 * 179.97438 * 26 25 24 42 42 H 1.07995 * 120.00361 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2929 2.3748 0.0058 5 6 1.9221 3.6056 0.0004 6 6 3.3027 3.6798 -0.0053 7 6 4.0601 2.5235 -0.0051 8 6 3.4359 1.2863 0.0003 9 8 4.1796 0.1476 0.0000 10 6 4.4378 -0.4137 -1.1966 11 8 4.0947 0.1482 -2.2180 12 7 5.0766 -1.5986 -1.2613 13 6 5.4643 -2.2328 -0.1083 14 1 4.8590 -2.1513 0.7824 15 6 6.6353 -2.9793 -0.0864 16 7 7.5783 -2.7492 -0.9729 17 14 6.8702 -4.3105 1.2028 18 1 5.7981 -5.3287 1.0641 19 1 8.1936 -4.9566 1.0118 20 1 6.8054 -3.7049 2.5573 21 6 5.3522 -2.2121 -2.5628 22 6 4.1505 -3.0044 -3.0092 23 6 4.0294 -4.3351 -2.6551 24 6 2.9247 -5.0606 -3.0605 25 6 1.9462 -4.4581 -3.8287 26 6 2.0697 -3.1287 -4.1873 27 6 3.1721 -2.4021 -3.7779 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2144 2.3197 0.0099 32 1 1.3338 4.5114 0.0010 33 1 3.7905 4.6434 -0.0091 34 1 5.1384 2.5843 -0.0091 35 1 8.3963 -3.2703 -0.9574 36 1 5.5655 -1.4326 -3.2941 37 1 6.2130 -2.8753 -2.4770 38 1 4.7959 -4.8070 -2.0581 39 1 2.8283 -6.0992 -2.7806 40 1 1.0853 -5.0260 -4.1492 41 1 1.3054 -2.6581 -4.7879 42 1 3.2689 -1.3636 -4.0583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195252774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:03 Heat of formation + Delta-G solvation = -38.618465 kcal Electronic energy + Delta-G solvation = -28227.242838 eV Core-core repulsion = 24331.900739 eV Total energy + Delta-G solvation = -3895.342099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.50240 -39.17014 -38.43947 -37.14408 -36.08258 -34.67002 -31.86614 -30.89061 -30.26208 -30.12157 -29.58393 -27.09756 -25.92171 -24.76827 -22.59389 -22.01595 -21.90143 -20.92604 -19.83337 -18.49604 -17.77368 -16.68712 -16.41330 -16.26620 -15.76496 -15.44844 -14.93757 -14.81676 -14.50652 -14.40486 -14.30523 -14.13018 -13.64470 -13.38657 -13.03673 -12.78169 -12.47070 -12.24718 -12.03407 -11.94138 -11.60249 -11.49423 -11.29378 -11.01121 -10.93398 -10.89632 -10.85374 -10.47055 -10.33682 -10.15494 -9.97100 -9.56146 -8.97432 -8.60193 -8.30361 -8.14971 -7.85673 -7.65842 -6.40137 -4.05098 1.40145 1.61588 1.94077 2.02482 3.15625 3.22457 3.24312 3.41683 3.50916 4.00888 4.06404 4.25339 4.45881 4.94065 4.97800 5.03065 5.19746 5.25294 5.30365 5.43509 5.49112 5.51534 5.57473 5.59223 5.61009 5.85799 5.88927 6.09391 6.16178 6.21005 6.38437 6.43313 6.51620 6.61903 6.65080 6.74135 6.90122 7.05069 7.06308 7.12768 7.36749 7.46484 7.53528 7.63533 7.70628 7.92477 8.38768 9.06630 9.38453 9.94849 10.64106 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010117 B = 0.005425 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.833590 B = 5159.764974 C = 6669.049759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.300 6.300 3 C 0.122 3.878 4 C -0.204 4.204 5 C -0.091 4.091 6 C -0.147 4.147 7 C -0.084 4.084 8 C 0.098 3.902 9 O -0.288 6.288 10 C 0.610 3.390 11 O -0.613 6.613 12 N -0.415 5.415 13 C -0.324 4.324 14 H 0.094 0.906 15 C 0.041 3.959 16 N -0.865 5.865 17 Si 0.915 3.085 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.166 3.834 22 C -0.084 4.084 23 C -0.093 4.093 24 C -0.133 4.133 25 C -0.132 4.132 26 C -0.134 4.134 27 C -0.098 4.098 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.271 0.729 36 H 0.065 0.935 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.549 3.813 -0.258 11.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.213 6.213 3 C 0.075 3.925 4 C -0.223 4.223 5 C -0.109 4.109 6 C -0.166 4.166 7 C -0.103 4.103 8 C 0.054 3.946 9 O -0.200 6.200 10 C 0.366 3.634 11 O -0.507 6.507 12 N -0.140 5.140 13 C -0.452 4.452 14 H 0.112 0.888 15 C -0.164 4.164 16 N -0.502 5.502 17 Si 0.741 3.259 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.196 1.196 21 C 0.044 3.956 22 C -0.086 4.086 23 C -0.112 4.112 24 C -0.151 4.151 25 C -0.150 4.150 26 C -0.152 4.152 27 C -0.116 4.116 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.333 3.723 -0.579 10.998 hybrid contribution -0.189 -0.510 0.663 0.858 sum -10.522 3.213 0.084 11.002 Atomic orbital electron populations 1.23031 0.78991 1.03841 1.00798 1.86256 1.20788 1.26113 1.88110 1.19382 0.91547 0.84986 0.96546 1.21051 0.99705 0.91905 1.09591 1.20868 0.94618 0.96699 0.98719 1.20855 0.93673 0.97755 1.04277 1.21178 1.00845 0.90522 0.97744 1.17739 0.86099 0.86001 1.04808 1.84416 1.65972 1.36620 1.33029 1.18653 0.82455 0.81908 0.80383 1.90802 1.61526 1.64518 1.33817 1.42276 1.52335 1.12664 1.06688 1.19502 1.05965 1.29135 0.90600 0.88830 1.25294 0.93820 0.99241 0.98071 1.69932 1.05448 1.38241 1.36574 0.86183 0.77516 0.81111 0.81106 1.19668 1.20833 1.19615 1.20471 0.95161 0.96674 0.83294 1.20619 0.97710 0.94265 0.95975 1.21127 0.97734 0.94119 0.98212 1.21038 0.95000 0.99500 0.99591 1.20965 0.98897 0.95231 0.99921 1.21032 0.98203 0.94547 1.01392 1.21290 0.93412 0.99837 0.97097 0.92875 0.88381 0.92915 0.85353 0.85824 0.85548 0.84708 0.91889 0.91664 0.85860 0.86082 0.86877 0.87137 0.87064 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.30 -5.80 10.28 -34.16 -0.35 -6.15 16 3 C 0.12 2.32 6.70 -39.11 -0.26 2.06 16 4 C -0.20 -3.03 9.04 -39.46 -0.36 -3.38 16 5 C -0.09 -1.21 10.04 -39.58 -0.40 -1.61 16 6 C -0.15 -2.11 10.04 -39.58 -0.40 -2.50 16 7 C -0.08 -1.52 9.98 -39.46 -0.39 -1.91 16 8 C 0.10 2.08 4.94 -39.11 -0.19 1.89 16 9 O -0.29 -7.22 8.89 -30.27 -0.27 -7.49 16 10 C 0.61 16.10 8.25 54.05 0.45 16.55 16 11 O -0.61 -16.51 14.71 -19.29 -0.28 -16.79 16 12 N -0.42 -10.91 2.54 -121.52 -0.31 -11.22 16 13 C -0.32 -8.65 8.98 -14.92 -0.13 -8.78 16 14 H 0.09 2.54 7.68 -52.49 -0.40 2.14 16 15 C 0.04 1.03 4.93 -17.47 -0.09 0.94 16 16 N -0.86 -22.54 11.34 55.49 0.63 -21.91 16 17 Si 0.91 19.74 29.61 -169.99 -5.03 14.70 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 21 C 0.17 4.01 5.04 -5.19 -0.03 3.98 16 22 C -0.08 -1.83 5.42 -104.62 -0.57 -2.40 16 23 C -0.09 -1.86 9.70 -39.58 -0.38 -2.24 16 24 C -0.13 -2.28 10.05 -39.59 -0.40 -2.67 16 25 C -0.13 -2.12 10.05 -39.59 -0.40 -2.52 16 26 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 27 C -0.10 -1.99 9.40 -39.58 -0.37 -2.36 16 28 H 0.05 0.62 7.67 -51.93 -0.40 0.22 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 31 H 0.13 1.51 6.30 -52.49 -0.33 1.18 16 32 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.14 2.32 8.06 -52.48 -0.42 1.90 16 35 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.06 1.59 7.50 -51.93 -0.39 1.20 16 37 H 0.12 3.08 5.30 -51.93 -0.28 2.80 16 38 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 39 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.12 2.66 7.28 -52.49 -0.38 2.28 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -31.50 363.37 -8.56 -40.06 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.09 Total: 9.63 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -3.33 Total: -6.30 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.32 Total: -33.14 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.90 Total: -30.43 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.50 -8.56 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195252774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.438 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds