Wall clock time and date at job start Tue Mar 31 2020 14:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35977 * 116.99965 * 2 1 4 4 C 1.38588 * 120.07297 * 0.27581 * 3 2 1 5 5 C 1.38226 * 119.99585 * 180.25772 * 4 3 2 6 6 C 1.38266 * 120.15487 * 359.73771 * 5 4 3 7 7 C 1.38225 * 120.14519 * 359.97438 * 6 5 4 8 8 C 1.38583 * 120.00444 * 0.02562 * 7 6 5 9 9 O 1.36003 * 120.07830 * 179.97438 * 8 7 6 10 10 C 1.34672 * 116.99942 * 265.92632 * 9 8 7 11 11 O 1.21519 * 120.00030 * 5.30263 * 10 9 8 12 12 N 1.34774 * 119.99642 * 185.30568 * 10 9 8 13 13 C 1.37179 * 120.00432 * 359.97438 * 12 10 9 14 14 H 1.08001 * 119.99399 * 34.03533 * 13 12 10 15 15 C 1.38886 * 120.00007 * 214.04520 * 13 12 10 16 16 N 1.31453 * 120.00527 * 22.06250 * 15 13 12 17 17 Si 1.86800 * 119.99544 * 202.07077 * 15 13 12 18 18 H 1.48498 * 109.47601 * 59.99604 * 17 15 13 19 19 H 1.48504 * 109.47109 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.47142 * 299.99746 * 17 15 13 21 21 C 1.46503 * 119.99731 * 179.72638 * 12 10 9 22 22 C 1.50700 * 109.46874 * 274.79041 * 21 12 10 23 23 C 1.38236 * 120.00294 * 270.53205 * 22 21 12 24 24 C 1.38239 * 120.00025 * 179.76817 * 23 22 21 25 25 C 1.38225 * 120.00013 * 0.50524 * 24 23 22 26 26 C 1.38240 * 120.00188 * 359.74678 * 25 24 23 27 27 C 1.38234 * 119.99823 * 0.02562 * 26 25 24 28 28 H 1.08996 * 109.47104 * 60.00620 * 1 2 3 29 29 H 1.09000 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47609 * 299.99731 * 1 2 3 31 31 H 1.07999 * 120.00393 * 359.97389 * 4 3 2 32 32 H 1.08010 * 119.92112 * 179.76247 * 5 4 3 33 33 H 1.08000 * 119.92796 * 180.02562 * 6 5 4 34 34 H 1.08006 * 119.99993 * 180.02562 * 7 6 5 35 35 H 0.97002 * 120.00445 * 179.97438 * 16 15 13 36 36 H 1.08993 * 109.47342 * 34.79193 * 21 12 10 37 37 H 1.09000 * 109.47343 * 154.79636 * 21 12 10 38 38 H 1.08005 * 120.00026 * 0.02562 * 23 22 21 39 39 H 1.07999 * 119.99559 * 180.23456 * 24 23 22 40 40 H 1.07999 * 120.00182 * 179.72805 * 25 24 23 41 41 H 1.08001 * 120.00487 * 179.97438 * 26 25 24 42 42 H 1.07995 * 120.00361 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2929 2.3748 0.0058 5 6 1.9221 3.6056 0.0004 6 6 3.3027 3.6798 -0.0053 7 6 4.0601 2.5235 -0.0051 8 6 3.4359 1.2863 0.0003 9 8 4.1796 0.1476 0.0000 10 6 4.4378 -0.4137 -1.1966 11 8 4.0947 0.1482 -2.2180 12 7 5.0766 -1.5986 -1.2613 13 6 5.4643 -2.2328 -0.1083 14 1 4.8590 -2.1513 0.7824 15 6 6.6353 -2.9793 -0.0864 16 7 7.5783 -2.7492 -0.9729 17 14 6.8702 -4.3105 1.2028 18 1 5.7981 -5.3287 1.0641 19 1 8.1936 -4.9566 1.0118 20 1 6.8054 -3.7049 2.5573 21 6 5.3522 -2.2121 -2.5628 22 6 4.1505 -3.0044 -3.0092 23 6 4.0294 -4.3351 -2.6551 24 6 2.9247 -5.0606 -3.0605 25 6 1.9462 -4.4581 -3.8287 26 6 2.0697 -3.1287 -4.1873 27 6 3.1721 -2.4021 -3.7779 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2144 2.3197 0.0099 32 1 1.3338 4.5114 0.0010 33 1 3.7905 4.6434 -0.0091 34 1 5.1384 2.5843 -0.0091 35 1 8.3963 -3.2703 -0.9574 36 1 5.5655 -1.4326 -3.2941 37 1 6.2130 -2.8753 -2.4770 38 1 4.7959 -4.8070 -2.0581 39 1 2.8283 -6.0992 -2.7806 40 1 1.0853 -5.0260 -4.1492 41 1 1.3054 -2.6581 -4.7879 42 1 3.2689 -1.3636 -4.0583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195252774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:02 Heat of formation + Delta-G solvation = -55.450484 kcal Electronic energy + Delta-G solvation = -28227.972729 eV Core-core repulsion = 24331.900739 eV Total energy + Delta-G solvation = -3896.071990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08675 -40.73989 -39.94359 -38.56134 -37.70107 -36.64007 -33.78847 -32.52151 -31.71818 -31.41209 -30.88177 -28.20036 -27.72401 -26.68034 -24.08424 -23.36916 -23.26429 -22.43483 -21.57355 -20.33400 -19.15106 -18.43604 -18.04626 -17.75832 -17.39155 -16.76200 -16.60935 -16.24886 -16.13080 -15.91511 -15.82564 -15.50017 -15.24303 -14.78884 -14.68824 -14.23569 -14.01323 -13.64854 -13.47521 -13.25771 -13.17199 -13.06801 -12.91925 -12.67944 -12.58903 -12.23399 -12.15231 -12.06420 -11.96593 -11.78233 -11.61320 -11.52843 -10.92641 -9.91297 -9.76342 -9.66046 -9.63587 -9.17525 -8.37830 -6.11454 0.06257 0.35900 0.47454 0.55932 1.40170 1.43740 1.53706 1.84595 2.03415 2.31630 2.37639 2.76321 2.95353 3.03898 3.69685 3.83737 3.97486 4.02609 4.08554 4.19835 4.21513 4.32525 4.33990 4.34323 4.39650 4.44519 4.56739 4.62602 4.70953 4.76031 4.84547 5.09577 5.17946 5.19953 5.24363 5.28843 5.41968 5.43941 5.60745 5.62414 5.64602 5.76392 5.90220 5.98448 6.19054 6.33543 6.45408 7.05301 7.39001 7.98525 8.66996 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010117 B = 0.005425 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.833590 B = 5159.764974 C = 6669.049759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.343 6.343 3 C 0.103 3.897 4 C -0.198 4.198 5 C -0.072 4.072 6 C -0.140 4.140 7 C -0.103 4.103 8 C 0.033 3.967 9 O -0.306 6.306 10 C 0.599 3.401 11 O -0.632 6.632 12 N -0.424 5.424 13 C -0.350 4.350 14 H 0.078 0.922 15 C 0.010 3.990 16 N -0.889 5.889 17 Si 0.981 3.019 18 H -0.262 1.262 19 H -0.272 1.272 20 H -0.270 1.270 21 C 0.173 3.827 22 C -0.109 4.109 23 C -0.111 4.111 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.129 4.129 27 C -0.118 4.118 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.165 0.835 32 H 0.176 0.824 33 H 0.165 0.835 34 H 0.125 0.875 35 H 0.277 0.723 36 H 0.043 0.957 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.142 0.858 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.694 3.679 0.013 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.056 3.944 4 C -0.216 4.216 5 C -0.090 4.090 6 C -0.158 4.158 7 C -0.122 4.122 8 C -0.011 4.011 9 O -0.219 6.219 10 C 0.356 3.644 11 O -0.528 6.528 12 N -0.149 5.149 13 C -0.477 4.477 14 H 0.096 0.904 15 C -0.193 4.193 16 N -0.527 5.527 17 Si 0.804 3.196 18 H -0.186 1.186 19 H -0.196 1.196 20 H -0.195 1.195 21 C 0.051 3.949 22 C -0.110 4.110 23 C -0.129 4.129 24 C -0.144 4.144 25 C -0.135 4.135 26 C -0.146 4.146 27 C -0.137 4.137 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.097 0.903 31 H 0.183 0.817 32 H 0.193 0.807 33 H 0.183 0.817 34 H 0.143 0.857 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.166 0.834 40 H 0.175 0.825 41 H 0.160 0.840 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.488 3.601 -0.310 13.964 hybrid contribution 0.681 -0.338 0.548 0.937 sum -12.807 3.263 0.237 13.219 Atomic orbital electron populations 1.23366 0.76108 1.05290 1.02693 1.86187 1.24004 1.27136 1.88393 1.19622 0.91050 0.86371 0.97312 1.21522 1.01331 0.90910 1.07833 1.21507 0.94411 0.97938 0.95107 1.21318 0.94428 0.97698 1.02332 1.21354 1.00988 0.91084 0.98737 1.18433 0.87577 0.85694 1.09355 1.84403 1.66832 1.38451 1.32167 1.18920 0.82498 0.82039 0.80977 1.90730 1.62388 1.65103 1.34571 1.42516 1.52281 1.12877 1.07200 1.19527 1.06780 1.30709 0.90689 0.90391 1.26097 0.92798 1.00356 1.00062 1.70015 1.05848 1.38874 1.37921 0.85190 0.78017 0.78234 0.78199 1.18621 1.19624 1.19544 1.20322 0.96449 0.95851 0.82250 1.20424 0.97503 0.95128 0.97990 1.21145 0.99145 0.93594 0.99066 1.21428 0.93606 1.00873 0.98472 1.21463 0.99533 0.94633 0.97889 1.21371 0.97296 0.95211 1.00763 1.21201 0.94903 0.99250 0.98302 0.91461 0.87386 0.90282 0.81735 0.80656 0.81749 0.85692 0.91323 0.93863 0.87170 0.87159 0.83370 0.82479 0.84013 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 16 2 O -0.34 -13.70 10.28 -79.43 -0.82 -14.52 16 3 C 0.10 3.99 6.70 22.58 0.15 4.14 16 4 C -0.20 -5.40 9.04 22.35 0.20 -5.20 16 5 C -0.07 -1.64 10.04 22.27 0.22 -1.42 16 6 C -0.14 -3.73 10.04 22.27 0.22 -3.51 16 7 C -0.10 -3.87 9.98 22.35 0.22 -3.65 16 8 C 0.03 1.48 4.94 22.57 0.11 1.59 16 9 O -0.31 -16.74 8.89 4.69 0.04 -16.70 16 10 C 0.60 34.41 8.25 129.79 1.07 35.48 16 11 O -0.63 -36.97 14.71 19.78 0.29 -36.68 16 12 N -0.42 -24.12 2.54 -768.76 -1.95 -26.08 16 13 C -0.35 -19.91 8.98 84.01 0.75 -19.15 16 14 H 0.08 4.57 7.68 -2.91 -0.02 4.54 16 15 C 0.01 0.52 4.93 84.90 0.42 0.94 16 16 N -0.89 -48.53 11.34 21.65 0.25 -48.29 16 17 Si 0.98 41.38 29.61 68.60 2.03 43.41 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 C 0.17 9.10 5.04 85.63 0.43 9.53 16 22 C -0.11 -5.01 5.42 -19.86 -0.11 -5.12 16 23 C -0.11 -4.50 9.70 22.27 0.22 -4.29 16 24 C -0.13 -4.02 10.05 22.27 0.22 -3.79 16 25 C -0.12 -3.36 10.05 22.27 0.22 -3.14 16 26 C -0.13 -4.24 10.05 22.27 0.22 -4.02 16 27 C -0.12 -4.99 9.40 22.27 0.21 -4.78 16 28 H 0.07 1.43 7.67 -2.39 -0.02 1.41 16 29 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.08 1.49 7.65 -2.39 -0.02 1.47 16 31 H 0.17 3.19 6.30 -2.91 -0.02 3.17 16 32 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 35 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 36 H 0.04 2.35 7.50 -2.39 -0.02 2.33 16 37 H 0.11 5.97 5.30 -2.39 -0.01 5.96 16 38 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 39 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 42 H 0.10 4.68 7.28 -2.91 -0.02 4.65 16 Total: -1.00 -76.99 363.37 6.79 -70.20 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 1.04 Total: 33.46 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 5.91 Total: -4.80 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -1.71 Total: -74.37 kcal Atomic # 8 Polarization: -67.42 SS G_CDS: -0.48 Total: -67.90 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -76.99 6.79 -70.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195252774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.753 kcal (2) G-P(sol) polarization free energy of solvation -76.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds