Wall clock time and date at job start Tue Mar 31 2020 14:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35876 * 117.00265 * 2 1 4 4 C 1.39500 * 119.77593 * 0.27196 * 3 2 1 5 5 C 1.37908 * 120.62960 * 180.24195 * 4 3 2 6 6 C 1.39232 * 120.15663 * 359.48253 * 5 4 3 7 7 C 1.47745 * 120.22277 * 180.27758 * 6 5 4 8 8 C 1.39277 * 120.11562 * 65.00546 * 7 6 5 9 9 C 1.39374 * 119.75338 * 179.97438 * 8 7 6 10 10 C 1.47638 * 120.00803 * 179.97438 * 9 8 7 11 11 N 1.34783 * 120.00161 * 179.97438 * 10 9 8 12 12 O 1.21579 * 120.00337 * 0.02562 * 10 9 8 13 13 C 1.39913 * 119.98581 * 359.97438 * 9 8 7 14 14 C 1.37775 * 120.23296 * 0.02562 * 13 9 8 15 15 C 1.38782 * 120.24751 * 359.74006 * 14 13 9 16 16 O 1.35620 * 119.99261 * 180.25189 * 15 14 13 17 17 C 1.42894 * 116.99824 * 0.26225 * 16 15 14 18 18 C 1.41933 * 119.54852 * 0.26175 * 6 5 4 19 19 C 1.40862 * 120.30065 * 180.02562 * 18 6 5 20 20 H 1.07998 * 120.00095 * 25.32662 * 19 18 6 21 21 C 1.40023 * 120.00037 * 205.31986 * 19 18 6 22 22 N 1.30805 * 119.99672 * 15.49533 * 21 19 18 23 23 Si 1.86794 * 120.00265 * 195.48864 * 21 19 18 24 24 H 1.48499 * 109.47012 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47091 * 120.00562 * 23 21 19 26 26 H 1.48501 * 109.47481 * 240.00368 * 23 21 19 27 27 C 1.37891 * 119.77746 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47367 * 59.99950 * 1 2 3 29 29 H 1.08996 * 109.47634 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47187 * 300.00620 * 1 2 3 31 31 H 1.08001 * 119.68393 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.92149 * 179.76893 * 5 4 3 33 33 H 1.07999 * 120.12392 * 359.95128 * 8 7 6 34 34 H 0.96996 * 119.99863 * 0.02562 * 11 10 9 35 35 H 0.96998 * 119.99698 * 180.02562 * 11 10 9 36 36 H 1.07996 * 119.88078 * 180.02562 * 13 9 8 37 37 H 1.07999 * 119.87330 * 180.02562 * 14 13 9 38 38 H 1.08995 * 109.47122 * 179.97438 * 17 16 15 39 39 H 1.09006 * 109.47567 * 299.99582 * 17 16 15 40 40 H 1.08997 * 109.47530 * 59.99429 * 17 16 15 41 41 H 0.96996 * 119.99571 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.08953 * 0.04591 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2816 2.3776 0.0057 5 6 1.8893 3.6156 0.0008 6 6 3.2783 3.7129 0.0009 7 6 3.9309 5.0384 0.0018 8 6 3.7828 5.8895 1.0944 9 6 4.4023 7.1380 1.0875 10 6 4.2486 8.0448 2.2424 11 7 4.8481 9.2520 2.2358 12 8 3.5822 7.7024 3.1998 13 6 5.1697 7.5318 -0.0141 14 6 5.3157 6.6894 -1.0946 15 6 4.7072 5.4421 -1.0959 16 8 4.8586 4.6151 -2.1600 17 6 5.6624 5.0902 -3.2417 18 6 4.0628 2.5301 0.0004 19 6 5.4692 2.6102 0.0011 20 1 5.9601 3.4846 0.4019 21 6 6.2306 1.5559 -0.5180 22 7 5.6633 0.6468 -1.2680 23 14 8.0566 1.4479 -0.1394 24 1 8.4514 2.5894 0.7245 25 1 8.3414 0.1723 0.5657 26 1 8.8287 1.4957 -1.4070 27 6 3.4232 1.2774 0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2037 2.3110 0.0097 32 1 1.2865 4.5117 0.0016 33 1 3.1900 5.5832 1.9436 34 1 5.3802 9.5251 1.4721 35 1 4.7475 9.8475 2.9947 36 1 5.6492 8.4994 -0.0175 37 1 5.9098 6.9991 -1.9417 38 1 5.7014 4.3334 -4.0251 39 1 5.2279 6.0062 -3.6423 40 1 6.6713 5.2934 -2.8828 41 1 6.1909 -0.0833 -1.6278 42 1 4.0092 0.3702 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205221314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:39 Heat of formation + Delta-G solvation = -67.408256 kcal Electronic energy + Delta-G solvation = -27737.255162 eV Core-core repulsion = 23840.664644 eV Total energy + Delta-G solvation = -3896.590518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.01492 -38.94413 -38.54424 -36.73336 -35.99265 -33.71647 -33.47927 -31.33167 -29.94278 -29.61167 -28.23263 -27.00592 -26.11067 -25.14416 -23.23175 -22.36378 -20.88432 -20.54138 -19.54215 -17.93190 -17.63228 -17.26823 -16.60942 -16.10613 -15.46819 -15.25457 -14.99855 -14.87178 -14.75902 -14.62865 -14.43406 -13.83167 -13.62813 -13.19645 -13.08973 -12.80790 -12.56923 -12.37575 -11.93485 -11.70078 -11.48977 -11.29208 -11.21981 -11.15340 -11.04969 -10.62647 -10.58355 -10.34955 -9.99972 -9.82233 -9.70422 -9.62062 -9.53675 -9.14465 -8.44921 -7.64485 -7.43382 -6.88647 -6.60543 -4.37792 1.35905 1.76434 2.75127 2.95143 3.05608 3.11053 3.21204 3.26423 3.67881 3.85263 3.90929 4.31032 4.36903 4.62813 5.00969 5.08328 5.25015 5.38352 5.50691 5.58214 5.67612 5.71917 5.79309 5.84634 5.86865 5.95136 6.13199 6.17378 6.38361 6.41795 6.55827 6.70213 6.79969 6.88341 6.91300 7.05944 7.21979 7.30501 7.45686 7.46635 7.74955 7.80965 7.96077 8.05273 8.09920 8.40149 8.43360 8.78519 8.87263 8.96317 10.15864 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009310 B = 0.005270 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.740184 B = 5311.389733 C = 6851.134203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.330 6.330 3 C 0.133 3.867 4 C -0.318 4.318 5 C -0.039 4.039 6 C -0.199 4.199 7 C -0.016 4.016 8 C -0.025 4.025 9 C -0.192 4.192 10 C 0.570 3.430 11 N -0.859 5.859 12 O -0.548 6.548 13 C -0.064 4.064 14 C -0.230 4.230 15 C 0.177 3.823 16 O -0.269 6.269 17 C 0.026 3.974 18 C 0.164 3.836 19 C -0.432 4.432 20 H 0.077 0.923 21 C 0.079 3.921 22 N -0.777 5.777 23 Si 0.899 3.101 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.194 4.194 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.136 0.864 34 H 0.398 0.602 35 H 0.399 0.601 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.280 0.720 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.120 10.311 -2.569 10.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.089 3.911 4 C -0.338 4.338 5 C -0.057 4.057 6 C -0.200 4.200 7 C -0.017 4.017 8 C -0.044 4.044 9 C -0.195 4.195 10 C 0.359 3.641 11 N -0.423 5.423 12 O -0.426 6.426 13 C -0.083 4.083 14 C -0.249 4.249 15 C 0.129 3.871 16 O -0.179 6.179 17 C -0.070 4.070 18 C 0.161 3.839 19 C -0.460 4.460 20 H 0.096 0.904 21 C -0.140 4.140 22 N -0.402 5.402 23 Si 0.724 3.276 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.200 1.200 27 C -0.214 4.214 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.154 0.846 34 H 0.227 0.773 35 H 0.229 0.771 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.729 9.315 -2.243 9.609 hybrid contribution 1.068 0.713 -0.252 1.309 sum 1.798 10.029 -2.495 10.490 Atomic orbital electron populations 1.22746 0.80861 1.01762 1.00511 1.85999 1.19437 1.29201 1.89800 1.19001 0.92479 0.82403 0.97216 1.20308 0.97243 0.92450 1.23807 1.20290 0.93138 0.95260 0.97053 1.18224 0.91897 0.90280 1.19638 1.18080 0.97862 0.94888 0.90869 1.21288 0.95657 0.90784 0.96716 1.19489 1.07125 0.97047 0.95863 1.18325 0.77988 0.81221 0.86614 1.43765 1.55502 1.18938 1.24071 1.90793 1.40576 1.75290 1.35952 1.20785 0.96760 0.98308 0.92459 1.20996 1.07321 0.95392 1.01217 1.19566 0.92241 0.87704 0.87547 1.86381 1.65491 1.40979 1.25074 1.23022 0.94409 1.00351 0.89213 1.17129 0.92610 0.88693 0.85492 1.19399 0.90949 1.02122 1.33573 0.90444 1.25906 1.00878 0.94472 0.92755 1.69843 1.38152 1.10321 1.21840 0.86392 0.82398 0.79597 0.79241 1.18310 1.19555 1.19974 1.20550 0.89307 0.99188 1.12386 0.93713 0.90010 0.93701 0.88679 0.89041 0.84573 0.77260 0.77065 0.86527 0.85592 0.88603 0.93496 0.93081 0.90863 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.80 101.05 0.99 1.61 16 2 O -0.33 -7.39 10.48 -19.35 -0.20 -7.60 16 3 C 0.13 3.26 6.67 -39.24 -0.26 3.00 16 4 C -0.32 -7.25 9.02 -39.23 -0.35 -7.61 16 5 C -0.04 -0.89 9.71 -39.33 -0.38 -1.27 16 6 C -0.20 -4.77 4.98 -104.23 -0.52 -5.29 16 7 C -0.02 -0.34 4.38 -104.82 -0.46 -0.80 16 8 C -0.03 -0.50 9.28 -38.77 -0.36 -0.86 16 9 C -0.19 -3.19 5.87 -105.01 -0.62 -3.80 16 10 C 0.57 9.00 8.04 -12.42 -0.10 8.90 16 11 N -0.86 -8.86 8.82 30.48 0.27 -8.59 16 12 O -0.55 -10.80 17.17 5.30 0.09 -10.71 16 13 C -0.06 -0.89 9.53 -39.12 -0.37 -1.27 16 14 C -0.23 -3.53 9.01 -39.55 -0.36 -3.89 16 15 C 0.18 3.42 5.96 -38.57 -0.23 3.19 16 16 O -0.27 -5.42 9.00 -18.56 -0.17 -5.59 16 17 C 0.03 0.37 9.81 101.05 0.99 1.36 16 18 C 0.16 4.28 5.40 -106.58 -0.58 3.70 16 19 C -0.43 -11.04 7.33 -37.92 -0.28 -11.32 16 20 H 0.08 1.98 7.07 -52.49 -0.37 1.61 16 21 C 0.08 1.93 5.18 -17.32 -0.09 1.84 16 22 N -0.78 -19.64 10.87 55.55 0.60 -19.04 16 23 Si 0.90 18.38 29.59 -169.99 -5.03 13.35 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 C -0.19 -5.17 8.60 -38.79 -0.33 -5.50 16 28 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.04 0.70 7.63 -51.93 -0.40 0.30 16 31 H 0.10 1.91 6.25 -52.49 -0.33 1.58 16 32 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.14 2.78 7.64 -52.49 -0.40 2.38 16 34 H 0.40 2.93 6.84 -40.82 -0.28 2.65 16 35 H 0.40 3.42 8.93 -40.82 -0.36 3.05 16 36 H 0.12 1.11 6.38 -52.49 -0.33 0.78 16 37 H 0.13 1.55 6.27 -52.49 -0.33 1.22 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.05 0.55 7.64 -51.93 -0.40 0.15 16 40 H 0.05 0.66 7.66 -51.93 -0.40 0.27 16 41 H 0.28 6.45 8.29 -40.82 -0.34 6.12 16 42 H 0.13 3.57 6.13 -52.49 -0.32 3.24 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -32.10 354.54 -7.12 -39.22 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -4.72 Total: 11.61 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -3.31 Total: -18.00 kcal Atomic # 7 Polarization: -28.50 SS G_CDS: 0.87 Total: -27.63 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.28 Total: -23.89 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.10 -7.12 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205221314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.189 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds