Wall clock time and date at job start Tue Mar 31 2020 14:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35876 * 117.00265 * 2 1 4 4 C 1.39500 * 119.77593 * 0.27196 * 3 2 1 5 5 C 1.37908 * 120.62960 * 180.24195 * 4 3 2 6 6 C 1.39232 * 120.15663 * 359.48253 * 5 4 3 7 7 C 1.47745 * 120.22277 * 180.27758 * 6 5 4 8 8 C 1.39277 * 120.11562 * 65.00546 * 7 6 5 9 9 C 1.39374 * 119.75338 * 179.97438 * 8 7 6 10 10 C 1.47638 * 120.00803 * 179.97438 * 9 8 7 11 11 N 1.34783 * 120.00161 * 179.97438 * 10 9 8 12 12 O 1.21579 * 120.00337 * 0.02562 * 10 9 8 13 13 C 1.39913 * 119.98581 * 359.97438 * 9 8 7 14 14 C 1.37775 * 120.23296 * 0.02562 * 13 9 8 15 15 C 1.38782 * 120.24751 * 359.74006 * 14 13 9 16 16 O 1.35620 * 119.99261 * 180.25189 * 15 14 13 17 17 C 1.42894 * 116.99824 * 0.26225 * 16 15 14 18 18 C 1.41933 * 119.54852 * 0.26175 * 6 5 4 19 19 C 1.40862 * 120.30065 * 180.02562 * 18 6 5 20 20 H 1.07998 * 120.00095 * 25.32662 * 19 18 6 21 21 C 1.40023 * 120.00037 * 205.31986 * 19 18 6 22 22 N 1.30805 * 119.99672 * 15.49533 * 21 19 18 23 23 Si 1.86794 * 120.00265 * 195.48864 * 21 19 18 24 24 H 1.48499 * 109.47012 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47091 * 120.00562 * 23 21 19 26 26 H 1.48501 * 109.47481 * 240.00368 * 23 21 19 27 27 C 1.37891 * 119.77746 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47367 * 59.99950 * 1 2 3 29 29 H 1.08996 * 109.47634 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47187 * 300.00620 * 1 2 3 31 31 H 1.08001 * 119.68393 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.92149 * 179.76893 * 5 4 3 33 33 H 1.07999 * 120.12392 * 359.95128 * 8 7 6 34 34 H 0.96996 * 119.99863 * 0.02562 * 11 10 9 35 35 H 0.96998 * 119.99698 * 180.02562 * 11 10 9 36 36 H 1.07996 * 119.88078 * 180.02562 * 13 9 8 37 37 H 1.07999 * 119.87330 * 180.02562 * 14 13 9 38 38 H 1.08995 * 109.47122 * 179.97438 * 17 16 15 39 39 H 1.09006 * 109.47567 * 299.99582 * 17 16 15 40 40 H 1.08997 * 109.47530 * 59.99429 * 17 16 15 41 41 H 0.96996 * 119.99571 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.08953 * 0.04591 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2816 2.3776 0.0057 5 6 1.8893 3.6156 0.0008 6 6 3.2783 3.7129 0.0009 7 6 3.9309 5.0384 0.0018 8 6 3.7828 5.8895 1.0944 9 6 4.4023 7.1380 1.0875 10 6 4.2486 8.0448 2.2424 11 7 4.8481 9.2520 2.2358 12 8 3.5822 7.7024 3.1998 13 6 5.1697 7.5318 -0.0141 14 6 5.3157 6.6894 -1.0946 15 6 4.7072 5.4421 -1.0959 16 8 4.8586 4.6151 -2.1600 17 6 5.6624 5.0902 -3.2417 18 6 4.0628 2.5301 0.0004 19 6 5.4692 2.6102 0.0011 20 1 5.9601 3.4846 0.4019 21 6 6.2306 1.5559 -0.5180 22 7 5.6633 0.6468 -1.2680 23 14 8.0566 1.4479 -0.1394 24 1 8.4514 2.5894 0.7245 25 1 8.3414 0.1723 0.5657 26 1 8.8287 1.4957 -1.4070 27 6 3.4232 1.2774 0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2037 2.3110 0.0097 32 1 1.2865 4.5117 0.0016 33 1 3.1900 5.5832 1.9436 34 1 5.3802 9.5251 1.4721 35 1 4.7475 9.8475 2.9947 36 1 5.6492 8.4994 -0.0175 37 1 5.9098 6.9991 -1.9417 38 1 5.7014 4.3334 -4.0251 39 1 5.2279 6.0062 -3.6423 40 1 6.6713 5.2934 -2.8828 41 1 6.1909 -0.0833 -1.6278 42 1 4.0092 0.3702 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205221314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:38 Heat of formation + Delta-G solvation = -89.877117 kcal Electronic energy + Delta-G solvation = -27738.229485 eV Core-core repulsion = 23840.664644 eV Total energy + Delta-G solvation = -3897.564841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.35809 -40.41157 -40.08869 -38.28765 -37.51129 -35.40467 -34.76000 -32.79642 -31.57900 -31.13922 -29.80718 -28.23159 -27.59890 -26.95063 -24.49719 -23.87829 -22.68790 -21.96844 -20.96908 -19.50965 -19.09559 -18.46678 -17.93628 -17.82488 -16.96150 -16.70266 -16.47195 -16.33797 -16.24816 -16.21422 -15.68610 -15.10972 -15.10354 -14.77447 -14.53559 -14.44731 -14.10036 -13.72860 -13.45534 -13.21656 -13.08593 -12.81819 -12.76581 -12.65325 -12.62269 -12.26502 -11.91776 -11.82892 -11.61926 -11.38595 -11.33262 -11.10387 -10.95912 -10.66523 -9.81744 -9.33760 -9.05335 -8.70042 -8.38916 -6.28513 0.05133 0.40055 0.99602 1.15002 1.36622 1.50311 1.51376 1.95148 2.20289 2.56251 2.66244 2.73884 2.81914 2.98649 3.72252 3.86820 3.96836 4.10802 4.28304 4.32105 4.37884 4.46173 4.48679 4.51373 4.53951 4.59937 4.74043 4.75222 4.77958 5.06332 5.11469 5.16924 5.26809 5.33151 5.38482 5.49759 5.59885 5.80158 5.94324 5.96770 6.00547 6.13518 6.21958 6.50192 6.52082 6.73486 6.95106 6.99087 7.10626 7.38254 8.36628 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009310 B = 0.005270 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.740184 B = 5311.389733 C = 6851.134203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.127 3.873 4 C -0.319 4.319 5 C -0.052 4.052 6 C -0.200 4.200 7 C -0.055 4.055 8 C -0.040 4.040 9 C -0.198 4.198 10 C 0.569 3.431 11 N -0.827 5.827 12 O -0.597 6.597 13 C -0.038 4.038 14 C -0.221 4.221 15 C 0.163 3.837 16 O -0.311 6.311 17 C 0.017 3.983 18 C 0.138 3.862 19 C -0.448 4.448 20 H 0.069 0.931 21 C 0.042 3.958 22 N -0.811 5.811 23 Si 0.967 3.033 24 H -0.259 1.259 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.231 4.231 28 H 0.052 0.948 29 H 0.116 0.884 30 H 0.055 0.945 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.417 0.583 35 H 0.412 0.588 36 H 0.175 0.825 37 H 0.166 0.834 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.286 0.714 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 13.410 -3.440 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.266 6.266 3 C 0.082 3.918 4 C -0.339 4.339 5 C -0.070 4.070 6 C -0.202 4.202 7 C -0.056 4.056 8 C -0.059 4.059 9 C -0.202 4.202 10 C 0.357 3.643 11 N -0.392 5.392 12 O -0.479 6.479 13 C -0.057 4.057 14 C -0.240 4.240 15 C 0.116 3.884 16 O -0.223 6.223 17 C -0.078 4.078 18 C 0.135 3.865 19 C -0.477 4.477 20 H 0.087 0.913 21 C -0.175 4.175 22 N -0.436 5.436 23 Si 0.788 3.212 24 H -0.183 1.183 25 H -0.193 1.193 26 H -0.183 1.183 27 C -0.252 4.252 28 H 0.071 0.929 29 H 0.134 0.866 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.250 0.750 35 H 0.245 0.755 36 H 0.192 0.808 37 H 0.183 0.817 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.130 12.464 -3.142 13.029 hybrid contribution 0.538 -0.154 -0.017 0.560 sum 2.667 12.310 -3.159 12.985 Atomic orbital electron populations 1.23123 0.77756 1.04449 1.01371 1.85958 1.22678 1.28403 1.89597 1.19094 0.92244 0.83738 0.96695 1.20596 0.98572 0.91817 1.22894 1.20639 0.93350 0.96149 0.96883 1.18605 0.92468 0.91418 1.17662 1.18053 1.00376 0.94255 0.92911 1.21123 0.96608 0.92404 0.95752 1.19639 1.07149 0.96063 0.97339 1.18261 0.77978 0.82412 0.85650 1.43449 1.53688 1.16917 1.25112 1.90779 1.43029 1.76588 1.37550 1.21334 0.94273 0.99900 0.90155 1.21411 1.06284 0.93521 1.02735 1.19707 0.92504 0.89186 0.87004 1.86310 1.66757 1.42805 1.26401 1.23310 0.94801 1.01732 0.87944 1.17466 0.93509 0.89340 0.86153 1.19404 0.91069 1.02597 1.34638 0.91275 1.26666 1.05073 0.93690 0.92027 1.69918 1.39942 1.11012 1.22726 0.85388 0.77038 0.79346 0.79453 1.18282 1.19342 1.18344 1.20512 0.90458 0.98729 1.15458 0.92889 0.86551 0.92645 0.85910 0.87061 0.87038 0.75000 0.75539 0.80827 0.81689 0.88556 0.90410 0.91560 0.90321 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.80 113.37 1.11 2.01 16 2 O -0.35 -16.21 10.48 -92.15 -0.97 -17.18 16 3 C 0.13 6.51 6.67 22.49 0.15 6.66 16 4 C -0.32 -14.92 9.02 22.50 0.20 -14.71 16 5 C -0.05 -2.46 9.71 22.43 0.22 -2.24 16 6 C -0.20 -10.09 4.98 -19.61 -0.10 -10.19 16 7 C -0.06 -2.41 4.38 -19.99 -0.09 -2.50 16 8 C -0.04 -1.60 9.28 22.79 0.21 -1.38 16 9 C -0.20 -6.25 5.87 -20.12 -0.12 -6.37 16 10 C 0.57 16.87 8.04 86.72 0.70 17.57 16 11 N -0.83 -13.75 8.82 -175.73 -1.55 -15.31 16 12 O -0.60 -23.54 17.17 -3.96 -0.07 -23.61 16 13 C -0.04 -0.90 9.53 22.57 0.21 -0.68 16 14 C -0.22 -5.98 9.01 22.29 0.20 -5.78 16 15 C 0.16 6.23 5.96 22.92 0.14 6.36 16 16 O -0.31 -12.59 9.00 -89.32 -0.80 -13.39 16 17 C 0.02 0.45 9.81 113.37 1.11 1.56 16 18 C 0.14 7.67 5.40 -21.13 -0.11 7.55 16 19 C -0.45 -24.10 7.33 23.35 0.17 -23.93 16 20 H 0.07 3.70 7.07 -2.91 -0.02 3.68 16 21 C 0.04 2.11 5.18 85.28 0.44 2.55 16 22 N -0.81 -43.03 10.87 21.84 0.24 -42.79 16 23 Si 0.97 38.39 29.59 68.60 2.03 40.42 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 25 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 26 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 27 C -0.23 -13.16 8.60 22.78 0.20 -12.96 16 28 H 0.05 1.62 7.66 -2.38 -0.02 1.60 16 29 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.05 1.67 7.63 -2.39 -0.02 1.65 16 31 H 0.12 4.89 6.25 -2.91 -0.02 4.87 16 32 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 33 H 0.11 4.89 7.64 -2.91 -0.02 4.87 16 34 H 0.42 3.76 6.84 -92.71 -0.63 3.12 16 35 H 0.41 5.51 8.93 -92.71 -0.83 4.69 16 36 H 0.17 2.04 6.38 -2.91 -0.02 2.02 16 37 H 0.17 3.13 6.27 -2.91 -0.02 3.12 16 38 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.08 1.57 7.64 -2.38 -0.02 1.55 16 40 H 0.07 1.55 7.66 -2.39 -0.02 1.53 16 41 H 0.29 13.75 8.29 -92.71 -0.77 12.98 16 42 H 0.10 6.25 6.13 -2.91 -0.02 6.24 16 Total: -1.00 -77.61 354.54 3.16 -74.45 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.36 Total: 33.89 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 4.65 Total: -36.49 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -1.31 Total: -58.10 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -1.84 Total: -54.18 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -77.61 3.16 -74.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205221314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.427 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds