Wall clock time and date at job start Tue Mar 31 2020 14:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35669 * 116.99540 * 2 1 4 4 C 1.38818 * 119.97727 * 0.25906 * 3 2 1 5 5 C 1.37765 * 120.21869 * 180.29371 * 4 3 2 6 6 C 1.39802 * 120.15849 * 359.72470 * 5 4 3 7 7 C 1.47623 * 120.02811 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99840 * 359.97438 * 7 6 5 9 9 O 1.21583 * 120.00532 * 179.97438 * 7 6 5 10 10 C 1.39517 * 119.94761 * 359.97438 * 6 5 4 11 11 C 1.38888 * 119.78185 * 359.97438 * 10 6 5 12 12 C 1.48342 * 120.08030 * 180.02562 * 11 10 6 13 13 C 1.39388 * 120.06462 * 130.23340 * 12 11 10 14 14 C 1.37916 * 119.93130 * 180.27552 * 13 12 11 15 15 C 1.38824 * 120.06607 * 359.46704 * 14 13 12 16 16 O 1.35886 * 119.93451 * 180.27951 * 15 14 13 17 17 C 1.42895 * 117.00121 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47504 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99403 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00533 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00158 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99941 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47613 * 89.99681 * 22 20 18 24 24 H 1.48498 * 109.47459 * 210.00107 * 22 20 18 25 25 H 1.48513 * 109.47012 * 329.99819 * 22 20 18 26 26 C 1.38820 * 120.13174 * 0.29900 * 15 14 13 27 27 C 1.37916 * 120.06983 * 359.96017 * 26 15 14 28 28 H 1.08999 * 109.47522 * 60.00027 * 1 2 3 29 29 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47081 * 299.99688 * 1 2 3 31 31 H 1.07997 * 119.89242 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.91766 * 179.69991 * 5 4 3 33 33 H 0.96999 * 120.00042 * 359.97438 * 8 7 6 34 34 H 0.96998 * 119.99775 * 179.97438 * 8 7 6 35 35 H 1.08003 * 120.11417 * 179.97438 * 10 6 5 36 36 H 1.08004 * 120.03776 * 0.02562 * 13 12 11 37 37 H 1.08002 * 119.97048 * 179.75047 * 14 13 12 38 38 H 1.09002 * 109.47525 * 300.00070 * 17 16 15 39 39 H 1.08998 * 109.47491 * 59.99920 * 17 16 15 40 40 H 0.97005 * 119.99764 * 180.02562 * 21 20 18 41 41 H 1.08000 * 119.96420 * 179.97438 * 26 15 14 42 42 H 1.07997 * 120.03195 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 1.2882 2.3727 0.0054 5 6 1.9083 3.6029 -0.0006 6 6 3.3039 3.6859 -0.0065 7 6 3.9654 5.0057 -0.0124 8 7 3.2239 6.1311 -0.0127 9 8 5.1791 5.0774 -0.0171 10 6 4.0710 2.5206 -0.0057 11 6 3.4434 1.2816 0.0015 12 6 4.2525 0.0383 0.0030 13 6 3.9840 -0.9685 0.9289 14 6 4.7416 -2.1209 0.9315 15 6 5.7636 -2.2834 0.0061 16 8 6.5048 -3.4224 0.0075 17 6 7.5407 -3.5234 -0.9716 18 6 8.2494 -4.8446 -0.8186 19 1 7.9399 -5.5376 -0.0502 20 6 9.2936 -5.1682 -1.6589 21 7 9.9123 -6.3210 -1.5250 22 14 9.8303 -3.9688 -2.9865 23 1 10.8748 -3.0638 -2.4432 24 1 10.3805 -4.7225 -4.1416 25 1 8.6621 -3.1663 -3.4302 26 6 6.0302 -1.2846 -0.9203 27 6 5.2795 -0.1277 -0.9245 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2099 2.3137 0.0101 32 1 1.3149 4.5053 -0.0013 33 1 2.2556 6.0740 -0.0094 34 1 3.6585 6.9983 -0.0162 35 1 5.1493 2.5816 -0.0106 36 1 3.1860 -0.8446 1.6461 37 1 4.5368 -2.8997 1.6512 38 1 7.1058 -3.4583 -1.9689 39 1 8.2531 -2.7103 -0.8321 40 1 10.6472 -6.5485 -2.1159 41 1 6.8262 -1.4137 -1.6387 42 1 5.4872 0.6488 -1.6457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205226061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:11 Heat of formation + Delta-G solvation = -89.117987 kcal Electronic energy + Delta-G solvation = -26184.832534 eV Core-core repulsion = 22287.300612 eV Total energy + Delta-G solvation = -3897.531922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.66220 -40.82566 -40.27682 -38.57642 -37.73914 -35.07890 -34.84602 -33.18250 -32.10426 -31.36620 -30.70122 -29.17824 -28.16813 -25.17603 -24.59553 -24.31511 -22.86348 -22.29869 -21.21109 -19.64442 -19.32212 -18.60541 -18.53429 -17.94534 -17.24767 -16.86739 -16.66083 -16.60558 -16.48226 -16.01877 -15.76462 -15.41847 -15.25397 -15.07483 -14.76884 -14.65528 -14.38436 -13.98489 -13.93031 -13.67543 -13.40382 -13.23995 -12.97581 -12.83141 -12.74523 -12.09968 -12.01463 -11.95110 -11.82938 -11.77114 -11.42193 -11.20764 -10.93342 -10.70833 -10.16583 -9.97548 -9.43392 -8.73503 -8.45954 -6.56588 -0.19443 0.02753 0.39886 0.65407 1.29635 1.31898 1.42149 1.81521 2.22125 2.30485 2.54240 2.55820 2.71039 2.85775 2.90803 3.51364 3.80113 3.88577 3.94018 3.98544 4.05524 4.17312 4.27413 4.38738 4.42973 4.47670 4.50757 4.58648 4.68006 4.74719 4.80077 4.84797 5.01661 5.09133 5.15058 5.20475 5.21823 5.34123 5.48137 5.55441 5.66152 5.77876 5.89862 6.00039 6.39192 6.45942 6.47454 6.72790 7.07363 7.32590 8.70506 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.002710 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.855822 B =10330.237119 C =11714.020919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.323 6.323 3 C 0.163 3.837 4 C -0.208 4.208 5 C -0.027 4.027 6 C -0.192 4.192 7 C 0.564 3.436 8 N -0.828 5.828 9 O -0.596 6.596 10 C -0.025 4.025 11 C -0.093 4.093 12 C -0.091 4.091 13 C -0.044 4.044 14 C -0.167 4.167 15 C 0.113 3.887 16 O -0.331 6.331 17 C 0.181 3.819 18 C -0.555 4.555 19 H 0.037 0.963 20 C 0.022 3.978 21 N -0.933 5.933 22 Si 0.949 3.051 23 H -0.258 1.258 24 H -0.267 1.267 25 H -0.245 1.245 26 C -0.224 4.224 27 C -0.066 4.066 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.418 0.582 34 H 0.412 0.588 35 H 0.123 0.877 36 H 0.148 0.852 37 H 0.135 0.865 38 H 0.026 0.974 39 H 0.024 0.976 40 H 0.277 0.723 41 H 0.124 0.876 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.662 27.315 1.777 38.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.116 3.884 4 C -0.226 4.226 5 C -0.045 4.045 6 C -0.196 4.196 7 C 0.351 3.649 8 N -0.393 5.393 9 O -0.478 6.478 10 C -0.044 4.044 11 C -0.094 4.094 12 C -0.092 4.092 13 C -0.062 4.062 14 C -0.186 4.186 15 C 0.067 3.933 16 O -0.245 6.245 17 C 0.107 3.893 18 C -0.592 4.592 19 H 0.055 0.945 20 C -0.178 4.178 21 N -0.571 5.571 22 Si 0.769 3.231 23 H -0.182 1.182 24 H -0.192 1.192 25 H -0.169 1.169 26 C -0.243 4.243 27 C -0.084 4.084 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.190 0.810 32 H 0.192 0.808 33 H 0.251 0.749 34 H 0.244 0.756 35 H 0.140 0.860 36 H 0.166 0.834 37 H 0.153 0.847 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.086 0.914 41 H 0.142 0.858 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.719 26.682 1.831 37.105 hybrid contribution 0.659 0.018 -0.590 0.885 sum -25.060 26.700 1.241 36.640 Atomic orbital electron populations 1.23474 0.75904 1.05685 1.03083 1.86153 1.23833 1.26542 1.87057 1.19428 0.90888 0.85743 0.92335 1.21471 1.01906 0.90619 1.08629 1.21463 0.91780 0.99101 0.92166 1.19687 0.94908 0.92240 1.12737 1.18353 0.86131 0.85678 0.74713 1.43523 1.11732 1.07756 1.76276 1.90826 1.16111 1.88279 1.52613 1.21116 1.00135 0.90081 0.93039 1.17934 0.90338 0.92094 1.09039 1.18525 0.97714 0.94706 0.98227 1.21028 0.97268 0.90731 0.97138 1.20550 0.96801 1.00485 1.00746 1.19709 0.92126 0.86125 0.95308 1.86073 1.45931 1.36313 1.56172 1.20655 0.84813 0.96575 0.87223 1.21008 1.17317 1.02073 1.18822 0.94470 1.25734 0.94934 0.97492 0.99591 1.69995 1.23287 1.23758 1.40084 0.85706 0.80049 0.78996 0.78318 1.18195 1.19187 1.16884 1.21324 1.04572 0.96013 1.02368 1.21117 0.93626 0.96031 0.97655 0.90864 0.87214 0.90350 0.80953 0.80830 0.74922 0.75567 0.85951 0.83426 0.84662 0.95616 0.95856 0.91397 0.85821 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.32 -5.81 8.82 -89.86 -0.79 -6.60 16 3 C 0.16 2.95 6.60 22.85 0.15 3.10 16 4 C -0.21 -2.12 9.01 22.30 0.20 -1.92 16 5 C -0.03 -0.24 9.52 22.54 0.21 -0.03 16 6 C -0.19 -3.37 5.87 -20.11 -0.12 -3.49 16 7 C 0.56 10.75 8.04 86.72 0.70 11.44 16 8 N -0.83 -6.48 8.82 -175.75 -1.55 -8.03 16 9 O -0.60 -17.79 17.17 -3.98 -0.07 -17.85 16 10 C -0.02 -0.58 9.04 22.73 0.21 -0.37 16 11 C -0.09 -2.21 5.48 -19.99 -0.11 -2.32 16 12 C -0.09 -2.65 5.27 -20.04 -0.11 -2.76 16 13 C -0.04 -1.28 8.77 22.47 0.20 -1.08 16 14 C -0.17 -5.85 9.97 22.33 0.22 -5.63 16 15 C 0.11 4.73 6.69 22.55 0.15 4.88 16 16 O -0.33 -16.75 10.12 -92.26 -0.93 -17.68 16 17 C 0.18 9.48 3.56 71.24 0.25 9.73 16 18 C -0.55 -34.29 9.99 25.60 0.26 -34.04 16 19 H 0.04 2.57 8.06 -2.91 -0.02 2.54 16 20 C 0.02 1.31 5.47 84.65 0.46 1.77 16 21 N -0.93 -58.66 13.96 21.45 0.30 -58.36 16 22 Si 0.95 43.59 27.47 68.60 1.88 45.48 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 H -0.25 -10.46 6.54 99.48 0.65 -9.80 16 26 C -0.22 -8.46 9.02 22.33 0.20 -8.25 16 27 C -0.07 -2.10 9.49 22.47 0.21 -1.89 16 28 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 29 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.08 0.29 7.64 -2.39 -0.02 0.27 16 31 H 0.17 0.48 6.27 -2.91 -0.02 0.47 16 32 H 0.17 -0.11 6.38 -2.91 -0.02 -0.13 16 33 H 0.42 -0.06 6.84 -92.71 -0.63 -0.69 16 34 H 0.41 2.48 8.93 -92.71 -0.83 1.65 16 35 H 0.12 3.33 7.62 -2.91 -0.02 3.31 16 36 H 0.15 3.51 7.68 -2.91 -0.02 3.48 16 37 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.03 1.30 6.72 -2.39 -0.02 1.29 16 39 H 0.02 1.17 7.08 -2.39 -0.02 1.16 16 40 H 0.28 15.88 8.31 -92.70 -0.77 15.11 16 41 H 0.12 4.70 6.28 -2.91 -0.02 4.68 16 42 H 0.14 3.77 8.04 -2.91 -0.02 3.75 16 Total: -1.00 -84.39 358.40 2.62 -81.77 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -0.43 Total: 10.91 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 4.20 Total: -29.64 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: -1.25 Total: -66.38 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -1.79 Total: -42.14 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -84.39 2.62 -81.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205226061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.345 kcal (2) G-P(sol) polarization free energy of solvation -84.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds