Wall clock time and date at job start Tue Mar 31 2020 15:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 117.00026 * 2 1 4 4 O 1.20829 * 119.99983 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00052 * 180.02562 * 3 2 1 6 6 C 1.50708 * 109.46812 * 179.97438 * 5 3 2 7 7 C 1.38297 * 119.91817 * 269.71932 * 6 5 3 8 8 C 1.38095 * 120.07224 * 179.72986 * 7 6 5 9 9 C 1.38934 * 119.92249 * 0.54640 * 8 7 6 10 10 N 1.39690 * 120.07797 * 179.75203 * 9 8 7 11 11 C 1.39789 * 120.00151 * 154.18834 * 10 9 8 12 12 C 1.38978 * 120.00614 * 328.83856 * 11 10 9 13 13 C 1.37994 * 119.98996 * 179.76726 * 12 11 10 14 14 C 1.38907 * 120.00655 * 0.51576 * 13 12 11 15 15 O 1.35783 * 119.99291 * 179.71756 * 14 13 12 16 16 C 1.34815 * 117.00407 * 186.86602 * 15 14 13 17 17 H 1.07998 * 119.99697 * 354.60629 * 16 15 14 18 18 C 1.38615 * 120.00070 * 174.61400 * 16 15 14 19 19 N 1.31577 * 120.00370 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99730 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47170 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47337 * 119.99770 * 20 18 16 23 23 H 1.48503 * 109.46919 * 239.99912 * 20 18 16 24 24 C 1.38916 * 120.01887 * 359.73924 * 14 13 12 25 25 C 1.37991 * 120.00260 * 0.02562 * 24 14 13 26 26 C 1.38938 * 119.85044 * 359.73010 * 9 8 7 27 27 C 1.38097 * 119.91986 * 359.97438 * 26 9 8 28 28 H 1.09005 * 109.47103 * 299.99890 * 1 2 3 29 29 H 1.08992 * 109.47212 * 60.00200 * 1 2 3 30 30 H 1.08996 * 109.46899 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46716 * 299.99287 * 5 3 2 32 32 H 1.08995 * 109.47217 * 59.99546 * 5 3 2 33 33 H 1.07997 * 119.96296 * 359.97438 * 7 6 5 34 34 H 1.07998 * 120.03721 * 180.28319 * 8 7 6 35 35 H 0.97000 * 119.99804 * 334.18567 * 10 9 8 36 36 H 1.07995 * 119.99931 * 0.02673 * 12 11 10 37 37 H 1.07999 * 119.99196 * 180.23123 * 13 12 11 38 38 H 0.96995 * 120.00026 * 180.02562 * 19 18 16 39 39 H 1.07995 * 119.99899 * 179.97438 * 24 14 13 40 40 H 1.08004 * 120.00534 * 179.97438 * 25 24 14 41 41 H 1.08003 * 120.04172 * 179.97438 * 26 9 8 42 42 H 1.07998 * 119.96315 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 3.9936 2.7201 -0.0011 7 6 4.1943 3.3796 -1.2000 8 6 4.5804 4.7055 -1.2042 9 6 4.7781 5.3736 -0.0022 10 7 5.1737 6.7133 -0.0027 11 6 4.8666 7.5332 1.0871 12 6 3.7088 7.3077 1.8220 13 6 3.4084 8.1143 2.9007 14 6 4.2577 9.1580 3.2454 15 8 3.9589 9.9550 4.3033 16 6 4.7447 11.0329 4.4988 17 1 5.6189 11.1827 3.8827 18 6 4.4305 11.9490 5.4906 19 7 3.3651 11.7667 6.2410 20 14 5.5196 13.4422 5.7618 21 1 6.6463 13.4153 4.7947 22 1 4.7231 14.6791 5.5602 23 1 6.0558 13.4188 7.1465 24 6 5.4124 9.3869 2.5079 25 6 5.7158 8.5778 1.4321 26 6 4.5811 4.7063 1.2004 27 6 4.1891 3.3821 1.1972 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.9564 0.7806 0.8892 32 1 3.9557 0.7809 -0.8907 33 1 4.0451 2.8583 -2.1340 34 1 4.7325 5.2213 -2.1408 35 1 5.6615 7.0747 -0.7592 36 1 3.0464 6.4988 1.5514 37 1 2.5106 7.9368 3.4740 38 1 3.1451 12.4079 6.9347 39 1 6.0723 10.1988 2.7759 40 1 6.6134 8.7560 0.8584 41 1 4.7344 5.2225 2.1366 42 1 4.0362 2.8626 2.1316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212608967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:05 Heat of formation + Delta-G solvation = -53.368768 kcal Electronic energy + Delta-G solvation = -25786.433909 eV Core-core repulsion = 21890.452189 eV Total energy + Delta-G solvation = -3895.981720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.73517 -39.82425 -38.78641 -37.18409 -36.53114 -34.72801 -32.36181 -31.84069 -30.99383 -30.22467 -28.69635 -27.64382 -26.23682 -25.11449 -23.01620 -22.30064 -21.75153 -21.00359 -20.42829 -18.09481 -17.82384 -17.40728 -17.12369 -16.84261 -16.65995 -16.30008 -15.28129 -14.94222 -14.53747 -14.37895 -13.93594 -13.89056 -13.76978 -13.65462 -13.50911 -13.31643 -12.87659 -12.77845 -12.49148 -12.36408 -12.24695 -11.84299 -11.70874 -11.57576 -11.34464 -11.10217 -11.04160 -10.95097 -10.69045 -10.67420 -10.43850 -10.01405 -9.35013 -8.86452 -8.83852 -8.27702 -7.95860 -6.58581 -6.44037 -4.01744 1.33413 1.49696 2.04252 2.11245 2.33205 2.62468 3.12092 3.13660 3.19082 3.61491 3.89134 3.96916 4.48060 4.54694 4.71527 4.80984 4.83372 4.91193 5.02647 5.07479 5.08666 5.21665 5.26040 5.30019 5.44301 5.53956 5.65968 5.67288 5.79021 6.03024 6.12636 6.13732 6.20171 6.34303 6.41195 6.52499 6.61668 6.77446 6.80561 6.98574 7.05023 7.22038 7.34345 7.52618 7.57740 7.84957 7.99943 8.01170 9.01411 9.72090 10.73999 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022061 B = 0.002156 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.929026 B =12980.991555 C =13923.150971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.454 3.546 4 O -0.492 6.492 5 C -0.061 4.061 6 C -0.139 4.139 7 C -0.064 4.064 8 C -0.186 4.186 9 C 0.212 3.788 10 N -0.681 5.681 11 C 0.068 3.932 12 C -0.105 4.105 13 C -0.165 4.165 14 C 0.136 3.864 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.208 4.208 25 C -0.105 4.105 26 C -0.172 4.172 27 C -0.062 4.062 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.402 0.598 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.269 0.731 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.131 0.869 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 -20.734 -14.184 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.296 3.704 4 O -0.378 6.378 5 C -0.098 4.098 6 C -0.141 4.141 7 C -0.082 4.082 8 C -0.208 4.208 9 C 0.111 3.889 10 N -0.303 5.303 11 C -0.026 4.026 12 C -0.126 4.126 13 C -0.185 4.185 14 C 0.083 3.917 15 O -0.083 6.083 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.228 4.228 25 C -0.126 4.126 26 C -0.194 4.194 27 C -0.081 4.081 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.237 0.763 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.880 -20.260 -13.684 24.465 hybrid contribution 0.502 1.029 -0.209 1.164 sum 1.382 -19.231 -13.893 23.765 Atomic orbital electron populations 1.23245 0.76445 1.03510 1.02662 1.86499 1.23401 1.33862 1.84518 1.23964 0.92277 0.81289 0.72836 1.90725 1.66988 1.36217 1.43856 1.20184 0.87281 0.96209 1.06141 1.18945 1.07162 0.94103 0.93865 1.20611 0.96990 0.93789 0.96834 1.20636 1.08099 0.95653 0.96378 1.17839 0.93514 0.83929 0.93645 1.41920 1.61394 1.06491 1.20471 1.17252 0.96213 0.95917 0.93258 1.20546 0.95161 1.00308 0.96569 1.20084 1.00925 0.97518 0.99972 1.19351 0.92777 0.91647 0.87956 1.83986 1.52086 1.33779 1.38445 1.21339 1.07250 0.99092 1.18953 0.89108 1.25279 0.97099 0.98628 0.95623 1.70055 1.24419 1.35910 1.19419 0.85656 0.79128 0.80046 0.78630 1.19144 1.20174 1.20178 1.21002 0.99723 1.03482 0.98632 1.20458 0.97795 0.96550 0.97797 1.20998 1.06191 0.94580 0.97606 1.20734 0.96541 0.93877 0.96975 0.91849 0.91960 0.88224 0.87112 0.87221 0.86486 0.86200 0.76323 0.86418 0.86129 0.92101 0.85183 0.87238 0.85071 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.37 -3.37 10.57 -39.25 -0.41 -3.79 16 3 C 0.45 4.83 7.95 36.01 0.29 5.11 16 4 O -0.49 -7.09 15.78 -18.75 -0.30 -7.38 16 5 C -0.06 -0.49 5.94 -29.03 -0.17 -0.66 16 6 C -0.14 -1.52 4.38 -104.58 -0.46 -1.98 16 7 C -0.06 -0.69 9.69 -39.61 -0.38 -1.08 16 8 C -0.19 -2.21 9.94 -39.38 -0.39 -2.60 16 9 C 0.21 2.93 6.05 -83.76 -0.51 2.42 16 10 N -0.68 -9.61 5.47 -8.37 -0.05 -9.66 16 11 C 0.07 1.17 5.94 -83.68 -0.50 0.67 16 12 C -0.11 -1.95 7.74 -39.40 -0.30 -2.25 16 13 C -0.17 -3.51 9.98 -39.42 -0.39 -3.90 16 14 C 0.14 3.26 6.64 -39.08 -0.26 3.00 16 15 O -0.18 -5.09 9.75 -0.01 0.00 -5.09 16 16 C -0.39 -10.83 9.48 30.87 0.29 -10.54 16 17 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 18 C 0.04 1.04 5.49 -17.52 -0.10 0.94 16 19 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 20 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 C -0.21 -4.43 9.16 -39.42 -0.36 -4.80 16 25 C -0.11 -1.88 9.95 -39.40 -0.39 -2.28 16 26 C -0.17 -2.43 7.84 -39.37 -0.31 -2.74 16 27 C -0.06 -0.77 9.69 -39.61 -0.38 -1.15 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.11 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.11 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.40 4.69 8.89 -40.82 -0.36 4.33 16 36 H 0.12 2.07 6.53 -52.49 -0.34 1.72 16 37 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.13 2.76 5.65 -52.49 -0.30 2.46 16 40 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.13 2.02 6.33 -52.48 -0.33 1.69 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -33.33 364.31 -7.76 -41.09 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -4.96 Total: 8.96 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -3.26 Total: -20.50 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.71 Total: -34.24 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.71 Total: -16.26 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.33 -7.76 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212608967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.282 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds