Wall clock time and date at job start Tue Mar 31 2020 15:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 117.00026 * 2 1 4 4 O 1.20829 * 119.99983 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00052 * 180.02562 * 3 2 1 6 6 C 1.50708 * 109.46812 * 179.97438 * 5 3 2 7 7 C 1.38297 * 119.91817 * 269.71932 * 6 5 3 8 8 C 1.38095 * 120.07224 * 179.72986 * 7 6 5 9 9 C 1.38934 * 119.92249 * 0.54640 * 8 7 6 10 10 N 1.39690 * 120.07797 * 179.75203 * 9 8 7 11 11 C 1.39789 * 120.00151 * 154.18834 * 10 9 8 12 12 C 1.38978 * 120.00614 * 328.83856 * 11 10 9 13 13 C 1.37994 * 119.98996 * 179.76726 * 12 11 10 14 14 C 1.38907 * 120.00655 * 0.51576 * 13 12 11 15 15 O 1.35783 * 119.99291 * 179.71756 * 14 13 12 16 16 C 1.34815 * 117.00407 * 186.86602 * 15 14 13 17 17 H 1.07998 * 119.99697 * 354.60629 * 16 15 14 18 18 C 1.38615 * 120.00070 * 174.61400 * 16 15 14 19 19 N 1.31577 * 120.00370 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99730 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47170 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47337 * 119.99770 * 20 18 16 23 23 H 1.48503 * 109.46919 * 239.99912 * 20 18 16 24 24 C 1.38916 * 120.01887 * 359.73924 * 14 13 12 25 25 C 1.37991 * 120.00260 * 0.02562 * 24 14 13 26 26 C 1.38938 * 119.85044 * 359.73010 * 9 8 7 27 27 C 1.38097 * 119.91986 * 359.97438 * 26 9 8 28 28 H 1.09005 * 109.47103 * 299.99890 * 1 2 3 29 29 H 1.08992 * 109.47212 * 60.00200 * 1 2 3 30 30 H 1.08996 * 109.46899 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46716 * 299.99287 * 5 3 2 32 32 H 1.08995 * 109.47217 * 59.99546 * 5 3 2 33 33 H 1.07997 * 119.96296 * 359.97438 * 7 6 5 34 34 H 1.07998 * 120.03721 * 180.28319 * 8 7 6 35 35 H 0.97000 * 119.99804 * 334.18567 * 10 9 8 36 36 H 1.07995 * 119.99931 * 0.02673 * 12 11 10 37 37 H 1.07999 * 119.99196 * 180.23123 * 13 12 11 38 38 H 0.96995 * 120.00026 * 180.02562 * 19 18 16 39 39 H 1.07995 * 119.99899 * 179.97438 * 24 14 13 40 40 H 1.08004 * 120.00534 * 179.97438 * 25 24 14 41 41 H 1.08003 * 120.04172 * 179.97438 * 26 9 8 42 42 H 1.07998 * 119.96315 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 3.9936 2.7201 -0.0011 7 6 4.1943 3.3796 -1.2000 8 6 4.5804 4.7055 -1.2042 9 6 4.7781 5.3736 -0.0022 10 7 5.1737 6.7133 -0.0027 11 6 4.8666 7.5332 1.0871 12 6 3.7088 7.3077 1.8220 13 6 3.4084 8.1143 2.9007 14 6 4.2577 9.1580 3.2454 15 8 3.9589 9.9550 4.3033 16 6 4.7447 11.0329 4.4988 17 1 5.6189 11.1827 3.8827 18 6 4.4305 11.9490 5.4906 19 7 3.3651 11.7667 6.2410 20 14 5.5196 13.4422 5.7618 21 1 6.6463 13.4153 4.7947 22 1 4.7231 14.6791 5.5602 23 1 6.0558 13.4188 7.1465 24 6 5.4124 9.3869 2.5079 25 6 5.7158 8.5778 1.4321 26 6 4.5811 4.7063 1.2004 27 6 4.1891 3.3821 1.1972 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.9564 0.7806 0.8892 32 1 3.9557 0.7809 -0.8907 33 1 4.0451 2.8583 -2.1340 34 1 4.7325 5.2213 -2.1408 35 1 5.6615 7.0747 -0.7592 36 1 3.0464 6.4988 1.5514 37 1 2.5106 7.9368 3.4740 38 1 3.1451 12.4079 6.9347 39 1 6.0723 10.1988 2.7759 40 1 6.6134 8.7560 0.8584 41 1 4.7344 5.2225 2.1366 42 1 4.0362 2.8626 2.1316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212608967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:04 Heat of formation + Delta-G solvation = -72.906010 kcal Electronic energy + Delta-G solvation = -25787.281107 eV Core-core repulsion = 21890.452189 eV Total energy + Delta-G solvation = -3896.828918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57941 -41.11608 -40.19818 -38.60617 -37.45764 -36.03838 -34.21647 -32.94738 -32.11412 -31.64112 -29.79803 -28.72708 -27.51041 -26.72537 -24.21160 -23.53178 -23.02373 -22.29246 -21.40158 -19.89413 -18.99506 -18.60050 -18.30657 -17.97984 -17.50614 -17.44680 -16.40259 -16.19194 -16.07909 -15.78041 -15.54924 -15.31116 -14.77101 -14.57149 -14.54786 -14.45343 -14.28100 -14.22844 -13.81951 -13.48125 -13.23510 -13.14742 -12.96475 -12.88169 -12.71610 -12.48522 -12.32460 -12.08844 -11.91287 -11.76734 -11.58649 -11.33436 -11.14384 -10.69772 -9.89768 -9.79133 -9.32683 -8.44708 -8.00015 -6.10508 0.27596 0.47141 0.56144 0.86191 1.25208 1.36181 1.44507 1.54536 1.89614 2.18912 2.43487 2.78649 2.98218 3.16720 3.54020 3.72615 3.93279 4.04134 4.07570 4.10091 4.14985 4.31197 4.33755 4.36783 4.47011 4.51395 4.52409 4.66530 4.72677 4.73882 4.81600 4.95863 5.06535 5.13515 5.19045 5.33951 5.38108 5.45117 5.49063 5.53557 5.66082 5.70162 5.86358 6.04055 6.06761 6.53603 6.80155 6.86590 7.00243 7.82350 8.79173 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022061 B = 0.002156 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.929026 B =12980.991555 C =13923.150971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.457 3.543 4 O -0.539 6.539 5 C -0.059 4.059 6 C -0.132 4.132 7 C -0.067 4.067 8 C -0.180 4.180 9 C 0.187 3.813 10 N -0.675 5.675 11 C 0.104 3.896 12 C -0.105 4.105 13 C -0.172 4.172 14 C 0.093 3.907 15 O -0.234 6.234 16 C -0.409 4.409 17 H 0.104 0.896 18 C -0.027 4.027 19 N -0.923 5.923 20 Si 1.019 2.981 21 H -0.249 1.249 22 H -0.270 1.270 23 H -0.270 1.270 24 C -0.208 4.208 25 C -0.104 4.104 26 C -0.191 4.191 27 C -0.075 4.075 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.417 0.583 36 H 0.129 0.871 37 H 0.113 0.887 38 H 0.271 0.729 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.109 0.891 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.252 -23.136 -17.439 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.301 3.699 4 O -0.428 6.428 5 C -0.095 4.095 6 C -0.134 4.134 7 C -0.086 4.086 8 C -0.201 4.201 9 C 0.088 3.912 10 N -0.300 5.300 11 C 0.008 3.992 12 C -0.126 4.126 13 C -0.192 4.192 14 C 0.043 3.957 15 O -0.142 6.142 16 C -0.485 4.485 17 H 0.121 0.879 18 C -0.224 4.224 19 N -0.562 5.562 20 Si 0.839 3.161 21 H -0.172 1.172 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.227 4.227 25 C -0.124 4.124 26 C -0.213 4.213 27 C -0.093 4.093 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.255 0.745 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.080 0.920 39 H 0.145 0.855 40 H 0.166 0.834 41 H 0.127 0.873 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.698 -22.763 -17.020 28.550 hybrid contribution -0.105 1.290 0.486 1.382 sum 2.593 -21.473 -16.535 27.225 Atomic orbital electron populations 1.23482 0.75363 1.05505 1.02140 1.86498 1.24508 1.33084 1.83965 1.24430 0.93147 0.80923 0.71367 1.90719 1.68147 1.37646 1.46266 1.20338 0.85529 0.94663 1.09019 1.19306 1.05136 0.95601 0.93330 1.21051 0.95834 0.93579 0.98115 1.20936 1.06667 0.96116 0.96396 1.17993 0.95170 0.83720 0.94350 1.41801 1.61778 1.06525 1.19885 1.17342 0.94521 0.94807 0.92571 1.20615 0.95978 1.00041 0.95919 1.20203 1.00633 0.97534 1.00807 1.19792 0.94770 0.92476 0.88673 1.83950 1.53788 1.35242 1.41172 1.21859 1.07734 0.99493 1.19442 0.87901 1.26597 0.98745 1.01961 0.95082 1.70208 1.27201 1.37795 1.21006 0.84518 0.77350 0.75301 0.78958 1.17238 1.19542 1.19492 1.21104 0.98641 1.03818 0.99161 1.20746 0.99003 0.95797 0.96899 1.20982 1.07609 0.95662 0.97055 1.20963 0.96538 0.93418 0.98398 0.92700 0.92236 0.85008 0.84709 0.83773 0.83460 0.84011 0.74498 0.85362 0.86881 0.91971 0.85480 0.83363 0.87263 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -5.77 10.57 -51.38 -0.54 -6.31 16 3 C 0.46 8.56 7.95 71.24 0.57 9.12 16 4 O -0.54 -14.77 15.78 21.95 0.35 -14.43 16 5 C -0.06 -0.71 5.94 29.10 0.17 -0.54 16 6 C -0.13 -2.47 4.38 -19.83 -0.09 -2.56 16 7 C -0.07 -1.20 9.69 22.25 0.22 -0.99 16 8 C -0.18 -3.65 9.94 22.40 0.22 -3.42 16 9 C 0.19 4.74 6.05 38.22 0.23 4.97 16 10 N -0.68 -17.31 5.47 -180.38 -0.99 -18.29 16 11 C 0.10 3.43 5.94 38.23 0.23 3.65 16 12 C -0.10 -3.90 7.74 22.39 0.17 -3.72 16 13 C -0.17 -7.68 9.98 22.37 0.22 -7.46 16 14 C 0.09 4.70 6.64 22.59 0.15 4.85 16 15 O -0.23 -14.27 9.75 -22.96 -0.22 -14.50 16 16 C -0.41 -23.90 9.48 67.91 0.64 -23.26 16 17 H 0.10 5.46 5.21 -2.91 -0.02 5.44 16 18 C -0.03 -1.55 5.49 84.82 0.47 -1.08 16 19 N -0.92 -57.44 13.67 21.61 0.30 -57.15 16 20 Si 1.02 43.15 29.55 68.60 2.03 45.18 16 21 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 C -0.21 -8.95 9.16 22.37 0.20 -8.75 16 25 C -0.10 -3.54 9.95 22.39 0.22 -3.32 16 26 C -0.19 -5.22 7.84 22.40 0.18 -5.04 16 27 C -0.07 -1.70 9.69 22.25 0.22 -1.49 16 28 H 0.05 0.77 8.13 -2.38 -0.02 0.75 16 29 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 30 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.14 1.05 8.08 -2.39 -0.02 1.03 16 32 H 0.14 0.82 8.08 -2.39 -0.02 0.80 16 33 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.42 8.25 8.89 -92.71 -0.82 7.43 16 36 H 0.13 4.50 6.53 -2.91 -0.02 4.48 16 37 H 0.11 5.07 8.06 -2.91 -0.02 5.04 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.13 5.48 5.65 -2.91 -0.02 5.47 16 40 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 41 H 0.11 3.40 6.33 -2.91 -0.02 3.38 16 42 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -78.60 364.31 6.38 -72.22 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.24 Total: 30.77 kcal Atomic # 6 Polarization: -42.70 SS G_CDS: 5.22 Total: -37.48 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -0.69 Total: -75.44 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -0.42 Total: -35.24 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -78.60 6.38 -72.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212608967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.688 kcal (2) G-P(sol) polarization free energy of solvation -78.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds