Wall clock time and date at job start Tue Mar 31 2020 14:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34752 * 116.99434 * 2 1 4 4 O 1.21504 * 120.00462 * 0.02562 * 3 2 1 5 5 C 1.47481 * 119.99900 * 180.02562 * 3 2 1 6 6 C 1.39769 * 120.06606 * 0.02562 * 5 3 2 7 7 C 1.37808 * 120.03489 * 180.02562 * 6 5 3 8 8 C 1.38793 * 120.17611 * 0.02562 * 7 6 5 9 9 O 1.35793 * 119.92801 * 179.97438 * 8 7 6 10 10 C 1.42897 * 117.00420 * 0.02562 * 9 8 7 11 11 C 1.39585 * 120.13781 * 359.96842 * 8 7 6 12 12 N 1.40000 * 120.01657 * 179.97438 * 11 8 7 13 13 C 1.39692 * 120.00122 * 71.43679 * 12 11 8 14 14 C 1.39356 * 119.95347 * 6.09338 * 13 12 11 15 15 C 1.38467 * 120.42040 * 180.02562 * 14 13 12 16 16 C 1.37693 * 120.32821 * 359.95000 * 15 14 13 17 17 C 1.40757 * 119.90053 * 0.02562 * 16 15 14 18 18 C 1.41402 * 120.20783 * 180.27589 * 17 16 15 19 19 H 1.07998 * 120.00614 * 331.84104 * 18 17 16 20 20 C 1.39936 * 119.99775 * 151.83859 * 18 17 16 21 21 N 1.30833 * 120.00067 * 347.54009 * 20 18 17 22 22 Si 1.86801 * 119.99518 * 167.53864 * 20 18 17 23 23 H 1.48494 * 109.47421 * 60.00372 * 22 20 18 24 24 H 1.48507 * 109.46592 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47211 * 299.99934 * 22 20 18 26 26 C 1.38302 * 119.95260 * 186.07163 * 13 12 11 27 27 C 1.38310 * 119.96397 * 0.26361 * 11 8 7 28 28 H 1.09002 * 109.47714 * 59.99936 * 1 2 3 29 29 H 1.08999 * 109.46684 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47328 * 299.99723 * 1 2 3 31 31 H 1.07995 * 119.98304 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.91003 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47550 * 180.02562 * 10 9 8 34 34 H 1.09005 * 109.47150 * 300.00198 * 10 9 8 35 35 H 1.09004 * 109.47122 * 60.00233 * 10 9 8 36 36 H 0.97008 * 119.99756 * 251.43355 * 12 11 8 37 37 H 1.07994 * 119.78901 * 359.97438 * 14 13 12 38 38 H 1.08003 * 119.83327 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.04978 * 180.02562 * 16 15 14 40 40 H 0.96999 * 119.99476 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.16249 * 0.02562 * 26 13 12 42 42 H 1.07997 * 120.09243 * 179.72310 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5364 1.2780 -0.0006 6 6 4.2991 0.1068 -0.0017 7 6 5.6752 0.1797 -0.0017 8 6 6.3084 1.4148 0.0000 9 8 7.6647 1.4809 0.0005 10 6 8.3747 0.2408 -0.0013 11 6 5.5538 2.5892 0.0009 12 7 6.1951 3.8337 0.0031 13 6 6.8583 4.2797 -1.1426 14 6 6.7748 3.5465 -2.3248 15 6 7.4287 3.9794 -3.4660 16 6 8.1684 5.1406 -3.4452 17 6 8.2617 5.8920 -2.2587 18 6 9.0148 7.0885 -2.2317 19 1 9.8539 7.2137 -2.8999 20 6 8.6727 8.1105 -1.3391 21 7 7.5278 8.0710 -0.7070 22 14 9.8507 9.5311 -1.0501 23 1 10.0943 10.2408 -2.3316 24 1 9.2581 10.4733 -0.0669 25 1 11.1362 9.0085 -0.5215 26 6 7.5965 5.4485 -1.1022 27 6 4.1723 2.5226 0.0058 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.8097 -0.8560 -0.0025 32 1 6.2626 -0.7266 -0.0021 33 1 9.4471 0.4360 -0.0002 34 1 8.1090 -0.3313 0.8877 35 1 8.1096 -0.3284 -0.8923 36 1 6.1788 4.3863 0.8002 37 1 6.1970 2.6345 -2.3508 38 1 7.3572 3.4040 -4.3771 39 1 8.6763 5.4743 -4.3381 40 1 7.2909 8.7793 -0.0881 41 1 7.6621 6.0176 -0.1866 42 1 3.5865 3.4299 0.0110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213248159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:05 Heat of formation + Delta-G solvation = -65.483866 kcal Electronic energy + Delta-G solvation = -26909.998415 eV Core-core repulsion = 23013.491345 eV Total energy + Delta-G solvation = -3896.507070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.72273 -39.94256 -37.86049 -37.20730 -36.36018 -34.85380 -33.24553 -30.65533 -30.26722 -29.40581 -28.07683 -27.50882 -26.69534 -25.14347 -23.62831 -22.38954 -20.98588 -20.94894 -19.97301 -18.23986 -17.80843 -17.27211 -16.92393 -16.42767 -16.12469 -15.95870 -15.55698 -15.26168 -14.67527 -14.46032 -14.16751 -14.00925 -13.81159 -13.52552 -12.93134 -12.87087 -12.77401 -12.35577 -12.30332 -12.17674 -11.94543 -11.65445 -11.25731 -11.10118 -11.07367 -11.00519 -10.92229 -10.66649 -10.57556 -10.43030 -9.71661 -9.47146 -9.41048 -9.03874 -8.80464 -8.13419 -7.24640 -6.67190 -6.25422 -4.29255 0.76667 1.29199 2.53166 2.59437 2.91589 3.11932 3.15260 3.19557 3.31724 3.35449 3.73888 4.01585 4.11368 4.64823 4.75259 4.81921 4.89520 4.93471 5.01003 5.09566 5.14705 5.22117 5.30929 5.48456 5.54128 5.73224 5.81984 6.02959 6.11775 6.22824 6.29669 6.35040 6.57583 6.59876 6.89626 7.09358 7.17358 7.32585 7.41837 7.44087 7.70959 7.84589 7.96818 8.09393 8.19526 8.50486 8.63877 8.83866 9.03236 9.10952 10.33115 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.003118 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.445708 B = 8977.777174 C = 9866.633665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.514 3.486 4 O -0.509 6.509 5 C -0.165 4.165 6 C -0.032 4.032 7 C -0.223 4.223 8 C 0.163 3.837 9 O -0.284 6.284 10 C 0.023 3.977 11 C 0.136 3.864 12 N -0.702 5.702 13 C 0.213 3.787 14 C -0.276 4.276 15 C -0.071 4.071 16 C -0.249 4.249 17 C 0.137 3.863 18 C -0.465 4.465 19 H 0.075 0.925 20 C 0.076 3.924 21 N -0.800 5.800 22 Si 0.907 3.093 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.266 1.266 26 C -0.212 4.212 27 C -0.030 4.030 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.402 0.598 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.277 0.723 41 H 0.120 0.880 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.478 -17.007 5.074 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.360 3.640 4 O -0.398 6.398 5 C -0.167 4.167 6 C -0.050 4.050 7 C -0.243 4.243 8 C 0.113 3.887 9 O -0.195 6.195 10 C -0.072 4.072 11 C 0.040 3.960 12 N -0.332 5.332 13 C 0.117 3.883 14 C -0.299 4.299 15 C -0.089 4.089 16 C -0.270 4.270 17 C 0.134 3.866 18 C -0.496 4.496 19 H 0.093 0.907 20 C -0.141 4.141 21 N -0.426 5.426 22 Si 0.732 3.268 23 H -0.192 1.192 24 H -0.205 1.205 25 H -0.190 1.190 26 C -0.236 4.236 27 C -0.050 4.050 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.238 0.762 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.137 0.863 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.730 -16.503 5.154 18.553 hybrid contribution 0.172 0.619 0.376 0.744 sum -6.558 -15.885 5.530 18.053 Atomic orbital electron populations 1.23246 0.76264 1.03508 1.02659 1.86536 1.23338 1.32936 1.84727 1.21123 0.89080 0.81265 0.72538 1.90850 1.66799 1.35956 1.46184 1.18722 0.88694 0.94440 1.14857 1.21102 0.92813 0.97724 0.93394 1.21099 0.95419 0.96522 1.11211 1.19965 0.83403 0.93587 0.91774 1.86306 1.14775 1.31842 1.86558 1.23135 0.97503 0.85554 1.00986 1.16618 0.89159 0.85125 1.05052 1.41717 1.60113 1.16727 1.14651 1.17585 0.92458 0.93588 0.84683 1.19839 1.13195 1.03195 0.93639 1.20264 0.97104 0.95950 0.95625 1.20916 1.08837 0.99633 0.97569 1.17308 0.88939 0.90910 0.89484 1.19491 1.13412 0.98998 1.17680 0.90704 1.25851 0.94758 0.99377 0.94090 1.69823 1.19008 1.32129 1.21682 0.86397 0.81179 0.80333 0.78889 1.19164 1.20505 1.19030 1.20767 1.06242 0.96541 1.00016 1.21405 0.93006 0.97214 0.93383 0.91838 0.88149 0.91917 0.84465 0.84612 0.88045 0.92797 0.92529 0.76172 0.90048 0.89651 0.89298 0.91186 0.86250 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.36 -4.14 9.80 -40.63 -0.40 -4.54 16 3 C 0.51 7.34 7.89 34.50 0.27 7.61 16 4 O -0.51 -8.61 16.13 -19.27 -0.31 -8.92 16 5 C -0.17 -2.33 5.87 -104.99 -0.62 -2.95 16 6 C -0.03 -0.37 9.60 -39.17 -0.38 -0.75 16 7 C -0.22 -2.69 9.01 -39.53 -0.36 -3.04 16 8 C 0.16 2.50 5.90 -38.87 -0.23 2.27 16 9 O -0.28 -4.53 9.98 -19.09 -0.19 -4.72 16 10 C 0.02 0.25 9.81 101.05 0.99 1.24 16 11 C 0.14 2.34 4.71 -83.60 -0.39 1.95 16 12 N -0.70 -13.83 5.20 -8.38 -0.04 -13.88 16 13 C 0.21 4.99 6.32 -83.84 -0.53 4.47 16 14 C -0.28 -6.42 9.11 -39.08 -0.36 -6.77 16 15 C -0.07 -1.65 10.01 -39.70 -0.40 -2.05 16 16 C -0.25 -6.32 9.79 -38.83 -0.38 -6.70 16 17 C 0.14 3.72 5.55 -106.85 -0.59 3.13 16 18 C -0.47 -12.59 9.06 -37.74 -0.34 -12.94 16 19 H 0.07 1.95 7.88 -52.49 -0.41 1.53 16 20 C 0.08 1.94 5.22 -17.34 -0.09 1.84 16 21 N -0.80 -21.01 10.88 55.55 0.60 -20.40 16 22 Si 0.91 19.11 29.58 -169.99 -5.03 14.08 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 C -0.21 -5.55 8.50 -38.67 -0.33 -5.88 16 27 C -0.03 -0.48 9.51 -38.98 -0.37 -0.85 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.14 1.25 7.60 -52.49 -0.40 0.85 16 32 H 0.14 1.23 6.27 -52.49 -0.33 0.90 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.44 7.65 -51.93 -0.40 0.05 16 35 H 0.06 0.52 7.65 -51.93 -0.40 0.13 16 36 H 0.40 7.43 8.84 -40.82 -0.36 7.07 16 37 H 0.08 1.79 6.61 -52.49 -0.35 1.44 16 38 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 41 H 0.12 3.21 6.23 -52.49 -0.33 2.88 16 42 H 0.15 2.43 7.64 -52.49 -0.40 2.03 16 LS Contribution 362.65 15.07 5.47 5.47 Total: -1.00 -31.53 362.65 -7.97 -39.50 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.04 Total: 11.46 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -3.03 Total: -18.05 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.56 Total: -34.28 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.90 Total: -18.18 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.53 -7.97 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213248159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.983 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds