Wall clock time and date at job start Tue Mar 31 2020 14:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34752 * 116.99434 * 2 1 4 4 O 1.21504 * 120.00462 * 0.02562 * 3 2 1 5 5 C 1.47481 * 119.99900 * 180.02562 * 3 2 1 6 6 C 1.39769 * 120.06606 * 0.02562 * 5 3 2 7 7 C 1.37808 * 120.03489 * 180.02562 * 6 5 3 8 8 C 1.38793 * 120.17611 * 0.02562 * 7 6 5 9 9 O 1.35793 * 119.92801 * 179.97438 * 8 7 6 10 10 C 1.42897 * 117.00420 * 0.02562 * 9 8 7 11 11 C 1.39585 * 120.13781 * 359.96842 * 8 7 6 12 12 N 1.40000 * 120.01657 * 179.97438 * 11 8 7 13 13 C 1.39692 * 120.00122 * 71.43679 * 12 11 8 14 14 C 1.39356 * 119.95347 * 6.09338 * 13 12 11 15 15 C 1.38467 * 120.42040 * 180.02562 * 14 13 12 16 16 C 1.37693 * 120.32821 * 359.95000 * 15 14 13 17 17 C 1.40757 * 119.90053 * 0.02562 * 16 15 14 18 18 C 1.41402 * 120.20783 * 180.27589 * 17 16 15 19 19 H 1.07998 * 120.00614 * 331.84104 * 18 17 16 20 20 C 1.39936 * 119.99775 * 151.83859 * 18 17 16 21 21 N 1.30833 * 120.00067 * 347.54009 * 20 18 17 22 22 Si 1.86801 * 119.99518 * 167.53864 * 20 18 17 23 23 H 1.48494 * 109.47421 * 60.00372 * 22 20 18 24 24 H 1.48507 * 109.46592 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47211 * 299.99934 * 22 20 18 26 26 C 1.38302 * 119.95260 * 186.07163 * 13 12 11 27 27 C 1.38310 * 119.96397 * 0.26361 * 11 8 7 28 28 H 1.09002 * 109.47714 * 59.99936 * 1 2 3 29 29 H 1.08999 * 109.46684 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47328 * 299.99723 * 1 2 3 31 31 H 1.07995 * 119.98304 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.91003 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47550 * 180.02562 * 10 9 8 34 34 H 1.09005 * 109.47150 * 300.00198 * 10 9 8 35 35 H 1.09004 * 109.47122 * 60.00233 * 10 9 8 36 36 H 0.97008 * 119.99756 * 251.43355 * 12 11 8 37 37 H 1.07994 * 119.78901 * 359.97438 * 14 13 12 38 38 H 1.08003 * 119.83327 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.04978 * 180.02562 * 16 15 14 40 40 H 0.96999 * 119.99476 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.16249 * 0.02562 * 26 13 12 42 42 H 1.07997 * 120.09243 * 179.72310 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5364 1.2780 -0.0006 6 6 4.2991 0.1068 -0.0017 7 6 5.6752 0.1797 -0.0017 8 6 6.3084 1.4148 0.0000 9 8 7.6647 1.4809 0.0005 10 6 8.3747 0.2408 -0.0013 11 6 5.5538 2.5892 0.0009 12 7 6.1951 3.8337 0.0031 13 6 6.8583 4.2797 -1.1426 14 6 6.7748 3.5465 -2.3248 15 6 7.4287 3.9794 -3.4660 16 6 8.1684 5.1406 -3.4452 17 6 8.2617 5.8920 -2.2587 18 6 9.0148 7.0885 -2.2317 19 1 9.8539 7.2137 -2.8999 20 6 8.6727 8.1105 -1.3391 21 7 7.5278 8.0710 -0.7070 22 14 9.8507 9.5311 -1.0501 23 1 10.0943 10.2408 -2.3316 24 1 9.2581 10.4733 -0.0669 25 1 11.1362 9.0085 -0.5215 26 6 7.5965 5.4485 -1.1022 27 6 4.1723 2.5226 0.0058 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.8097 -0.8560 -0.0025 32 1 6.2626 -0.7266 -0.0021 33 1 9.4471 0.4360 -0.0002 34 1 8.1090 -0.3313 0.8877 35 1 8.1096 -0.3284 -0.8923 36 1 6.1788 4.3863 0.8002 37 1 6.1970 2.6345 -2.3508 38 1 7.3572 3.4040 -4.3771 39 1 8.6763 5.4743 -4.3381 40 1 7.2909 8.7793 -0.0881 41 1 7.6621 6.0176 -0.1866 42 1 3.5865 3.4299 0.0110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213248159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:04 Heat of formation + Delta-G solvation = -83.204168 kcal Electronic energy + Delta-G solvation = -26910.766825 eV Core-core repulsion = 23013.491345 eV Total energy + Delta-G solvation = -3897.275480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.82880 -41.04918 -39.50602 -38.42551 -37.43756 -36.43656 -35.10030 -31.74856 -31.66551 -31.34667 -28.95381 -28.84807 -27.76354 -27.10169 -24.67153 -23.66054 -22.82907 -22.23877 -21.49389 -19.57944 -18.92377 -18.77328 -18.10357 -17.80964 -17.37549 -17.07022 -16.76717 -16.68946 -16.31218 -16.20539 -15.33949 -15.04173 -14.84494 -14.64484 -14.57222 -14.42225 -14.08063 -13.85681 -13.55644 -13.37782 -13.15337 -12.98501 -12.81564 -12.75139 -12.57003 -12.22111 -12.04039 -12.02637 -11.81571 -11.72614 -11.59969 -11.35940 -11.18506 -10.78832 -10.03181 -9.32404 -9.21479 -8.58085 -8.02645 -6.32604 -0.34230 0.17445 1.09212 1.29815 1.39136 1.43750 1.50694 1.58449 1.65166 2.24360 2.29450 2.58805 2.72698 2.84957 3.69195 3.77527 3.85665 3.90584 4.13536 4.29611 4.33886 4.35275 4.39952 4.43899 4.49910 4.64931 4.71234 4.73540 4.76591 4.97756 4.99098 5.11486 5.17063 5.20747 5.28148 5.29550 5.41843 5.48809 5.60573 5.93846 6.08004 6.20580 6.21589 6.38525 6.58716 6.66407 6.89092 7.04242 7.05161 7.17644 8.42678 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.003118 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.445708 B = 8977.777174 C = 9866.633665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.517 3.483 4 O -0.545 6.545 5 C -0.174 4.174 6 C -0.008 4.008 7 C -0.208 4.208 8 C 0.158 3.842 9 O -0.320 6.320 10 C 0.013 3.987 11 C 0.100 3.900 12 N -0.699 5.699 13 C 0.223 3.777 14 C -0.278 4.278 15 C -0.067 4.067 16 C -0.274 4.274 17 C 0.108 3.892 18 C -0.502 4.502 19 H 0.073 0.927 20 C 0.033 3.967 21 N -0.830 5.830 22 Si 0.982 3.018 23 H -0.261 1.261 24 H -0.270 1.270 25 H -0.261 1.261 26 C -0.241 4.241 27 C -0.037 4.037 28 H 0.059 0.941 29 H 0.140 0.860 30 H 0.061 0.939 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.401 0.599 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.283 0.717 41 H 0.102 0.898 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.749 -20.106 5.285 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.364 3.636 4 O -0.437 6.437 5 C -0.176 4.176 6 C -0.026 4.026 7 C -0.227 4.227 8 C 0.108 3.892 9 O -0.231 6.231 10 C -0.081 4.081 11 C 0.006 3.994 12 N -0.328 5.328 13 C 0.125 3.875 14 C -0.300 4.300 15 C -0.085 4.085 16 C -0.294 4.294 17 C 0.105 3.895 18 C -0.533 4.533 19 H 0.091 0.909 20 C -0.180 4.180 21 N -0.457 5.457 22 Si 0.803 3.197 23 H -0.185 1.185 24 H -0.194 1.194 25 H -0.185 1.185 26 C -0.264 4.264 27 C -0.058 4.058 28 H 0.077 0.923 29 H 0.158 0.842 30 H 0.080 0.920 31 H 0.193 0.807 32 H 0.194 0.806 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.237 0.763 37 H 0.115 0.885 38 H 0.135 0.865 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.026 -19.669 5.378 21.567 hybrid contribution 0.122 1.342 0.351 1.393 sum -6.904 -18.327 5.729 20.405 Atomic orbital electron populations 1.23603 0.74319 1.06044 1.02468 1.86515 1.25144 1.31046 1.83964 1.21169 0.89123 0.81562 0.71698 1.90838 1.67549 1.37344 1.48018 1.18801 0.89052 0.94509 1.15285 1.21504 0.92613 0.98170 0.90358 1.21480 0.95683 0.96465 1.09051 1.20022 0.83527 0.93954 0.91695 1.86256 1.15178 1.35116 1.86594 1.23470 0.97384 0.84205 1.03078 1.16810 0.89632 0.84641 1.08365 1.41639 1.59576 1.18038 1.13527 1.17655 0.91196 0.92520 0.86121 1.20037 1.13039 1.03589 0.93337 1.20603 0.95698 0.95304 0.96920 1.21067 1.10294 1.00743 0.97344 1.17694 0.89647 0.91668 0.90518 1.19760 1.14158 1.00068 1.19276 0.90859 1.26718 0.96230 1.01859 0.93215 1.69906 1.20478 1.33234 1.22054 0.85265 0.78678 0.76739 0.79032 1.18507 1.19409 1.18511 1.20675 1.08465 0.97959 0.99343 1.21241 0.92615 0.97698 0.94219 0.92260 0.84198 0.92026 0.80717 0.80639 0.87576 0.90060 0.90852 0.76261 0.88489 0.86460 0.88824 0.90616 0.88038 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.57 113.37 1.20 1.60 16 2 O -0.35 -7.12 9.80 -56.63 -0.56 -7.67 16 3 C 0.52 14.11 7.89 70.26 0.55 14.67 16 4 O -0.55 -18.59 16.13 19.82 0.32 -18.27 16 5 C -0.17 -4.65 5.87 -20.10 -0.12 -4.77 16 6 C -0.01 -0.16 9.60 22.54 0.22 0.05 16 7 C -0.21 -4.16 9.01 22.30 0.20 -3.96 16 8 C 0.16 4.58 5.90 22.73 0.13 4.71 16 9 O -0.32 -9.76 9.98 -91.24 -0.91 -10.67 16 10 C 0.01 0.23 9.81 113.37 1.11 1.34 16 11 C 0.10 3.45 4.71 38.18 0.18 3.63 16 12 N -0.70 -28.68 5.20 -180.41 -0.94 -29.61 16 13 C 0.22 10.84 6.32 38.17 0.24 11.09 16 14 C -0.28 -12.92 9.11 22.59 0.21 -12.71 16 15 C -0.07 -3.11 10.01 22.20 0.22 -2.89 16 16 C -0.27 -14.30 9.79 22.76 0.22 -14.07 16 17 C 0.11 6.13 5.55 -21.31 -0.12 6.01 16 18 C -0.50 -28.40 9.06 23.46 0.21 -28.19 16 19 H 0.07 3.99 7.88 -2.91 -0.02 3.96 16 20 C 0.03 1.76 5.22 85.25 0.45 2.20 16 21 N -0.83 -45.39 10.88 21.82 0.24 -45.15 16 22 Si 0.98 40.00 29.58 68.60 2.03 42.03 16 23 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 25 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 26 C -0.24 -13.25 8.50 22.86 0.19 -13.05 16 27 C -0.04 -1.21 9.51 22.66 0.22 -1.00 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.18 2.15 7.60 -2.91 -0.02 2.13 16 32 H 0.18 2.12 6.27 -2.91 -0.02 2.10 16 33 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.01 7.65 -2.38 -0.02 0.99 16 35 H 0.07 1.07 7.65 -2.38 -0.02 1.06 16 36 H 0.40 15.88 8.84 -92.70 -0.82 15.06 16 37 H 0.10 4.17 6.61 -2.91 -0.02 4.15 16 38 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 39 H 0.09 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 41 H 0.10 5.84 6.23 -2.91 -0.02 5.82 16 42 H 0.12 4.46 7.64 -2.91 -0.02 4.44 16 Total: -1.00 -72.65 362.65 5.75 -66.90 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: 0.25 Total: 37.79 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 5.32 Total: -35.34 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -0.70 Total: -74.77 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.15 Total: -36.61 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -72.65 5.75 -66.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213248159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.307 kcal (2) G-P(sol) polarization free energy of solvation -72.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds