Wall clock time and date at job start Tue Mar 31 2020 14:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34749 * 116.99710 * 2 1 4 4 O 1.21509 * 120.00235 * 0.02562 * 3 2 1 5 5 C 1.47413 * 119.99953 * 180.02562 * 3 2 1 6 6 C 1.39722 * 120.15913 * 0.02562 * 5 3 2 7 7 C 1.38478 * 119.81515 * 179.97438 * 6 5 3 8 8 N 1.39806 * 119.92216 * 179.97438 * 7 6 5 9 9 C 1.38627 * 119.99739 * 134.23227 * 8 7 6 10 10 C 1.38828 * 120.30094 * 352.05539 * 9 8 7 11 11 C 1.38105 * 120.02241 * 179.97438 * 10 9 8 12 12 C 1.38936 * 120.63374 * 359.97438 * 11 10 9 13 13 C 1.36418 * 120.61325 * 0.02562 * 12 11 10 14 14 C 1.40744 * 119.95169 * 359.97438 * 13 12 11 15 15 C 1.41003 * 120.30809 * 179.97438 * 14 13 12 16 16 H 1.08009 * 119.99838 * 150.94738 * 15 14 13 17 17 C 1.39894 * 120.00323 * 330.95502 * 15 14 13 18 18 N 1.30896 * 120.00397 * 156.42859 * 17 15 14 19 19 Si 1.86806 * 119.99699 * 336.42464 * 17 15 14 20 20 H 1.48495 * 109.46950 * 88.69548 * 19 17 15 21 21 H 1.48500 * 109.46878 * 208.69609 * 19 17 15 22 22 H 1.48494 * 109.47142 * 328.69049 * 19 17 15 23 23 C 1.39206 * 120.14692 * 0.26096 * 7 6 5 24 24 C 1.37968 * 120.32478 * 359.47678 * 23 7 6 25 25 C 1.38719 * 120.17888 * 0.51752 * 24 23 7 26 26 O 1.35705 * 120.07318 * 179.71868 * 25 24 23 27 27 C 1.42899 * 117.00126 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.46581 * 299.98952 * 1 2 3 29 29 H 1.08995 * 109.47490 * 59.99813 * 1 2 3 30 30 H 1.09005 * 109.46633 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.09174 * 0.02562 * 6 5 3 32 32 H 0.97002 * 120.00207 * 314.22815 * 8 7 6 33 33 H 1.08005 * 119.99091 * 0.26440 * 10 9 8 34 34 H 1.08007 * 119.68290 * 179.97438 * 11 10 9 35 35 H 1.08006 * 119.69202 * 180.02562 * 12 11 10 36 36 H 1.08003 * 120.02289 * 179.97438 * 13 12 11 37 37 H 0.96996 * 120.00418 * 179.97438 * 18 17 15 38 38 H 1.08003 * 119.84015 * 179.74605 * 23 7 6 39 39 H 1.07998 * 119.91019 * 180.24132 * 24 23 7 40 40 H 1.08994 * 109.47017 * 180.02562 * 27 26 25 41 41 H 1.08998 * 109.46990 * 299.99938 * 27 26 25 42 42 H 1.09002 * 109.46824 * 59.99923 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5358 1.2779 -0.0006 6 6 4.3001 0.1082 -0.0017 7 6 5.6825 0.1890 -0.0027 8 7 6.4494 -0.9799 -0.0033 9 6 7.5292 -1.1000 -0.8643 10 6 7.7573 -0.1391 -1.8400 11 6 8.8350 -0.2642 -2.6945 12 6 9.7001 -1.3463 -2.5891 13 6 9.5004 -2.3055 -1.6399 14 6 8.4100 -2.2031 -0.7560 15 6 8.1962 -3.1906 0.2276 16 1 7.7110 -2.9308 1.1570 17 6 8.6124 -4.5065 -0.0002 18 7 8.8499 -5.3024 1.0115 19 14 8.8293 -5.1281 -1.7484 20 1 10.2131 -4.8448 -2.2064 21 1 8.5851 -6.5924 -1.7870 22 1 7.8619 -4.4414 -2.6415 23 6 6.3102 1.4316 0.0028 24 6 5.5613 2.5903 -0.0016 25 6 4.1756 2.5251 -0.0006 26 8 3.4412 3.6662 0.0009 27 6 4.1607 4.9009 0.0008 28 1 -0.3632 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.8140 -0.8562 -0.0025 32 1 6.2260 -1.7068 0.5989 33 1 7.0944 0.7090 -1.9279 34 1 9.0071 0.4864 -3.4518 35 1 10.5385 -1.4288 -3.2651 36 1 10.1786 -3.1429 -1.5668 37 1 9.1382 -6.2149 0.8536 38 1 7.3887 1.4888 0.0061 39 1 6.0552 3.5507 -0.0012 40 1 3.4557 5.7322 0.0025 41 1 4.7885 4.9555 0.8901 42 1 4.7866 4.9566 -0.8899 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215090418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:25 Heat of formation + Delta-G solvation = -77.591052 kcal Electronic energy + Delta-G solvation = -27032.849326 eV Core-core repulsion = 23135.817249 eV Total energy + Delta-G solvation = -3897.032077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.87839 -40.79911 -40.11249 -38.54194 -37.37601 -35.68085 -35.44518 -32.81376 -32.19694 -30.98709 -29.18212 -28.66044 -27.78346 -26.76512 -25.16617 -23.71443 -22.66403 -22.36265 -21.37121 -19.39275 -19.26388 -18.66475 -18.32687 -18.03704 -17.41274 -16.98655 -16.91047 -16.62035 -16.54920 -15.76965 -15.49506 -15.24470 -14.82748 -14.77703 -14.48326 -14.41546 -14.27651 -13.88778 -13.80356 -13.51157 -13.36088 -13.04763 -12.90152 -12.85655 -12.51652 -12.27833 -12.21050 -12.10705 -11.77822 -11.66233 -11.52935 -11.44188 -11.09842 -10.88707 -10.18075 -9.46306 -9.33305 -8.84071 -8.10375 -6.23188 -0.37636 0.26555 0.85860 1.03633 1.31754 1.43153 1.51475 1.53414 1.71433 2.16731 2.28015 2.62729 2.65245 2.75942 3.58667 3.66843 3.79477 3.96579 4.19501 4.30801 4.34002 4.35295 4.37449 4.44104 4.44235 4.50059 4.61275 4.69076 4.75452 4.76880 4.83896 4.93174 5.06577 5.12061 5.27545 5.32977 5.33592 5.39820 5.55728 5.69293 5.85664 6.11977 6.21944 6.33658 6.42739 6.57498 6.73008 6.85675 7.03438 7.05742 8.23888 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.003492 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.188458 B = 8017.477024 C = 9273.699137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.511 3.489 4 O -0.518 6.518 5 C -0.158 4.158 6 C -0.066 4.066 7 C 0.124 3.876 8 N -0.678 5.678 9 C 0.099 3.901 10 C -0.156 4.156 11 C -0.186 4.186 12 C -0.126 4.126 13 C -0.227 4.227 14 C 0.035 3.965 15 C -0.482 4.482 16 H 0.064 0.936 17 C 0.057 3.943 18 N -0.848 5.848 19 Si 0.955 3.045 20 H -0.259 1.259 21 H -0.281 1.281 22 H -0.262 1.262 23 C -0.070 4.070 24 C -0.183 4.183 25 C 0.158 3.842 26 O -0.311 6.311 27 C 0.011 3.989 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.130 0.870 31 H 0.145 0.855 32 H 0.406 0.594 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.290 0.710 38 H 0.139 0.861 39 H 0.171 0.829 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 14.034 -3.194 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C 0.358 3.642 4 O -0.408 6.408 5 C -0.161 4.161 6 C -0.088 4.088 7 C 0.027 3.973 8 N -0.303 5.303 9 C 0.000 4.000 10 C -0.179 4.179 11 C -0.205 4.205 12 C -0.146 4.146 13 C -0.248 4.248 14 C 0.030 3.970 15 C -0.512 4.512 16 H 0.082 0.918 17 C -0.158 4.158 18 N -0.475 5.475 19 Si 0.779 3.221 20 H -0.184 1.184 21 H -0.208 1.208 22 H -0.187 1.187 23 C -0.091 4.091 24 C -0.201 4.201 25 C 0.110 3.890 26 O -0.223 6.223 27 C -0.083 4.083 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.163 0.837 32 H 0.243 0.757 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.157 0.843 39 H 0.189 0.811 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.851 14.199 -3.076 17.553 hybrid contribution 0.143 -1.003 0.041 1.014 sum -9.708 13.196 -3.035 16.661 Atomic orbital electron populations 1.23554 0.74353 1.05676 1.02657 1.86569 1.25276 1.32013 1.84230 1.21011 0.88983 0.81560 0.72680 1.90827 1.66893 1.36387 1.46692 1.18251 0.89146 0.92084 1.16599 1.21171 0.92050 0.97868 0.97685 1.17649 0.89862 0.87254 1.02501 1.41566 1.30046 1.16656 1.42000 1.17961 0.89727 0.98314 0.93965 1.20686 1.00405 0.99611 0.97162 1.20662 0.97506 0.99997 1.02346 1.20588 1.00085 0.95154 0.98730 1.20829 0.99734 1.01899 1.02297 1.17489 0.91684 0.93662 0.94133 1.19064 1.36554 0.93311 1.02250 0.91795 1.26584 0.90725 0.96877 1.01604 1.69796 1.34194 1.08719 1.34779 0.85695 0.80278 0.76514 0.79588 1.18412 1.20799 1.18662 1.21396 1.01137 0.90675 0.95913 1.21247 0.90865 1.00431 1.07601 1.18987 0.90278 0.85615 0.94156 1.86281 1.35642 1.13271 1.87148 1.23475 0.99056 0.82948 1.02853 0.91725 0.91781 0.85140 0.83721 0.75653 0.85926 0.85386 0.86406 0.88612 0.89978 0.84345 0.81138 0.86643 0.91023 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.57 113.37 1.20 1.77 16 2 O -0.36 -9.78 9.81 -56.60 -0.56 -10.33 16 3 C 0.51 15.71 7.89 70.24 0.55 16.26 16 4 O -0.52 -17.62 14.94 26.82 0.40 -17.22 16 5 C -0.16 -4.73 5.88 -20.03 -0.12 -4.85 16 6 C -0.07 -2.00 9.53 22.69 0.22 -1.78 16 7 C 0.12 4.00 5.70 38.16 0.22 4.22 16 8 N -0.68 -25.89 5.35 -179.41 -0.96 -26.85 16 9 C 0.10 4.21 6.44 39.03 0.25 4.46 16 10 C -0.16 -5.90 8.19 22.38 0.18 -5.72 16 11 C -0.19 -6.76 10.03 22.41 0.22 -6.54 16 12 C -0.13 -5.01 9.96 22.01 0.22 -4.79 16 13 C -0.23 -10.48 7.36 22.46 0.17 -10.31 16 14 C 0.03 1.69 5.09 -21.17 -0.11 1.58 16 15 C -0.48 -25.34 8.84 23.35 0.21 -25.13 16 16 H 0.06 3.53 7.11 -2.91 -0.02 3.51 16 17 C 0.06 2.94 5.32 85.23 0.45 3.39 16 18 N -0.85 -45.31 13.93 21.82 0.30 -45.00 16 19 Si 0.95 42.28 24.98 68.60 1.71 44.00 16 20 H -0.26 -10.98 6.35 99.48 0.63 -10.35 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 23 C -0.07 -1.95 7.45 22.44 0.17 -1.78 16 24 C -0.18 -4.20 9.02 22.32 0.20 -4.00 16 25 C 0.16 4.26 6.70 22.86 0.15 4.41 16 26 O -0.31 -8.06 8.56 -69.28 -0.59 -8.65 16 27 C 0.01 0.16 9.81 113.37 1.11 1.27 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.15 4.23 7.61 -2.91 -0.02 4.21 16 32 H 0.41 16.08 7.21 -92.71 -0.67 15.41 16 33 H 0.12 4.07 5.62 -2.91 -0.02 4.06 16 34 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.10 4.50 4.84 -2.91 -0.01 4.49 16 37 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 38 H 0.14 3.86 7.06 -2.91 -0.02 3.84 16 39 H 0.17 2.68 6.29 -2.91 -0.02 2.66 16 40 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 42 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 Total: -1.00 -64.23 349.93 5.94 -58.28 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.33 Total: 33.32 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 5.30 Total: -27.54 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -0.66 Total: -71.85 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -0.75 Total: -36.21 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.71 Total: 44.00 kcal Total: -64.23 5.94 -58.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215090418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.308 kcal (2) G-P(sol) polarization free energy of solvation -64.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds