Wall clock time and date at job start Tue Mar 31 2020 14:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34759 * 116.99595 * 2 1 4 4 O 1.21501 * 120.00522 * 359.97438 * 3 2 1 5 5 C 1.47411 * 119.99527 * 179.97438 * 3 2 1 6 6 C 1.39751 * 120.16469 * 0.29107 * 5 3 2 7 7 C 1.38407 * 119.82119 * 180.25298 * 6 5 3 8 8 N 1.39976 * 119.92350 * 179.73158 * 7 6 5 9 9 C 1.39702 * 120.00040 * 333.76131 * 8 7 6 10 10 C 1.39360 * 119.95162 * 328.09197 * 9 8 7 11 11 C 1.38473 * 120.42200 * 180.02562 * 10 9 8 12 12 C 1.37700 * 120.32541 * 0.02562 * 11 10 9 13 13 C 1.40756 * 119.89748 * 359.97438 * 12 11 10 14 14 C 1.41408 * 120.20713 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00123 * 335.64510 * 14 13 12 16 16 C 1.39924 * 120.00174 * 155.64646 * 14 13 12 17 17 N 1.30833 * 119.99966 * 344.09148 * 16 14 13 18 18 Si 1.86803 * 120.00085 * 164.09508 * 16 14 13 19 19 H 1.48501 * 109.47163 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46973 * 119.99981 * 18 16 14 21 21 H 1.48499 * 109.46842 * 239.99775 * 18 16 14 22 22 C 1.38299 * 119.95507 * 148.11637 * 9 8 7 23 23 C 1.39157 * 120.15016 * 359.45555 * 7 6 5 24 24 C 1.37982 * 120.33254 * 0.27449 * 23 7 6 25 25 C 1.38694 * 120.17600 * 0.02562 * 24 23 7 26 26 O 1.35723 * 120.07756 * 179.97438 * 25 24 23 27 27 C 1.42905 * 117.00192 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.46853 * 60.00050 * 1 2 3 29 29 H 1.09002 * 109.46729 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47090 * 300.00248 * 1 2 3 31 31 H 1.07996 * 120.08916 * 359.97438 * 6 5 3 32 32 H 0.96999 * 120.00111 * 153.76260 * 8 7 6 33 33 H 1.07995 * 119.79396 * 0.04496 * 10 9 8 34 34 H 1.07995 * 119.83770 * 179.97438 * 11 10 9 35 35 H 1.07997 * 120.04969 * 180.02562 * 12 11 10 36 36 H 0.96998 * 120.00351 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.16246 * 0.25058 * 22 9 8 38 38 H 1.08003 * 119.83167 * 180.30162 * 23 7 6 39 39 H 1.08006 * 119.91338 * 179.97438 * 24 23 7 40 40 H 1.08993 * 109.47003 * 299.99882 * 27 26 25 41 41 H 1.09000 * 109.47152 * 60.00180 * 27 26 25 42 42 H 1.09005 * 109.47158 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5358 1.2779 0.0006 6 6 4.3003 0.1080 -0.0050 7 6 5.6820 0.1887 0.0009 8 7 6.4498 -0.9817 0.0009 9 6 5.9234 -2.1624 0.5306 10 6 5.0226 -2.1076 1.5925 11 6 4.4952 -3.2719 2.1254 12 6 4.8560 -4.4974 1.6115 13 6 5.7648 -4.5685 0.5390 14 6 6.1402 -5.8236 0.0066 15 1 6.0721 -6.7116 0.6176 16 6 6.6001 -5.9151 -1.3117 17 7 6.3967 -4.9276 -2.1455 18 14 7.5043 -7.4472 -1.8814 19 1 7.6044 -8.4103 -0.7554 20 1 6.7599 -8.0727 -3.0037 21 1 8.8679 -7.0763 -2.3376 22 6 6.2973 -3.3839 0.0007 23 6 6.3096 1.4307 0.0009 24 6 5.5610 2.5898 0.0007 25 6 4.1756 2.5249 0.0011 26 8 3.4411 3.6662 0.0015 27 6 4.1608 4.9008 0.0021 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.8143 -0.8564 -0.0094 32 1 7.3474 -0.9730 -0.3667 33 1 4.7337 -1.1512 2.0023 34 1 3.7982 -3.2185 2.9485 35 1 4.4417 -5.4026 2.0302 36 1 6.7151 -4.9911 -3.0595 37 1 6.9988 -3.4278 -0.8193 38 1 7.3882 1.4877 0.0005 39 1 6.0552 3.5502 0.0012 40 1 4.7875 4.9556 0.8921 41 1 4.7877 4.9564 -0.8878 42 1 3.4559 5.7323 0.0028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215092346.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:30 Heat of formation + Delta-G solvation = -81.625029 kcal Electronic energy + Delta-G solvation = -27090.896539 eV Core-core repulsion = 23193.689535 eV Total energy + Delta-G solvation = -3897.207003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.84571 -40.70568 -39.96358 -38.47007 -37.37502 -36.07594 -35.04137 -32.77001 -31.39497 -30.92125 -29.05140 -28.72818 -27.52086 -27.16109 -25.19181 -23.31307 -22.94684 -22.11520 -21.48195 -19.48048 -19.15052 -18.76976 -17.93097 -17.76584 -17.41066 -16.98743 -16.57356 -16.54432 -16.41966 -16.21612 -15.47286 -15.16586 -14.69273 -14.53565 -14.44921 -14.32308 -14.11712 -13.86362 -13.62467 -13.48155 -13.02105 -12.99061 -12.86035 -12.74052 -12.50016 -12.29980 -12.20008 -12.10267 -11.78169 -11.59943 -11.55379 -11.42563 -11.16605 -10.78734 -10.16103 -9.32219 -9.26765 -8.59549 -7.88307 -6.33069 -0.34581 0.35567 1.03898 1.20468 1.41026 1.51019 1.55275 1.58573 1.75353 2.23536 2.32351 2.57737 2.70896 2.84151 3.65246 3.80201 3.83600 3.99344 4.23343 4.27776 4.31736 4.38382 4.45400 4.46474 4.51495 4.65626 4.70657 4.72630 4.80538 4.82624 4.96894 5.14420 5.17727 5.20158 5.26801 5.32625 5.40493 5.52032 5.59576 5.94668 6.06600 6.16726 6.20384 6.41871 6.53117 6.73411 6.86406 6.92963 7.00868 7.12716 8.37010 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015626 B = 0.003264 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.450733 B = 8575.562254 C = 9384.591313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.508 3.492 4 O -0.517 6.517 5 C -0.155 4.155 6 C -0.084 4.084 7 C 0.142 3.858 8 N -0.682 5.682 9 C 0.184 3.816 10 C -0.267 4.267 11 C -0.071 4.071 12 C -0.261 4.261 13 C 0.099 3.901 14 C -0.497 4.497 15 H 0.074 0.926 16 C 0.037 3.963 17 N -0.822 5.822 18 Si 0.980 3.020 19 H -0.260 1.260 20 H -0.269 1.269 21 H -0.264 1.264 22 C -0.221 4.221 23 C -0.086 4.086 24 C -0.172 4.172 25 C 0.141 3.859 26 O -0.316 6.316 27 C 0.012 3.988 28 H 0.065 0.935 29 H 0.125 0.875 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.411 0.589 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.286 0.714 37 H 0.110 0.890 38 H 0.164 0.836 39 H 0.177 0.823 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 15.225 1.180 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.284 6.284 3 C 0.355 3.645 4 O -0.408 6.408 5 C -0.157 4.157 6 C -0.107 4.107 7 C 0.043 3.957 8 N -0.306 5.306 9 C 0.088 3.912 10 C -0.289 4.289 11 C -0.090 4.090 12 C -0.281 4.281 13 C 0.097 3.903 14 C -0.526 4.526 15 H 0.092 0.908 16 C -0.178 4.178 17 N -0.448 5.448 18 Si 0.801 3.199 19 H -0.183 1.183 20 H -0.194 1.194 21 H -0.188 1.188 22 C -0.243 4.243 23 C -0.108 4.108 24 C -0.191 4.191 25 C 0.092 3.908 26 O -0.229 6.229 27 C -0.082 4.082 28 H 0.084 0.916 29 H 0.143 0.857 30 H 0.086 0.914 31 H 0.143 0.857 32 H 0.248 0.752 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.182 0.818 39 H 0.195 0.805 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.207 15.586 0.985 15.664 hybrid contribution 0.353 -0.860 -0.504 1.058 sum -0.854 14.726 0.480 14.758 Atomic orbital electron populations 1.23537 0.74465 1.05476 1.02748 1.86636 1.25297 1.32337 1.84119 1.21144 0.89318 0.81416 0.72648 1.90799 1.66949 1.36192 1.46853 1.18292 0.89011 0.92308 1.16088 1.21027 0.93037 0.97304 0.99285 1.17776 0.90126 0.87270 1.00527 1.41949 1.17397 1.05434 1.65850 1.17592 0.95924 0.85358 0.92346 1.20354 1.09098 0.97404 1.02042 1.20647 0.98049 0.92062 0.98226 1.21118 1.05538 0.96647 1.04844 1.17750 0.88639 0.93419 0.90539 1.19835 1.40230 0.94665 0.97894 0.90786 1.26694 0.94065 1.00899 0.96134 1.69895 1.35467 1.33693 1.05712 0.85194 0.78382 0.77724 0.78610 1.18330 1.19366 1.18850 1.20979 1.07909 0.90818 1.04618 1.21151 1.01728 0.89048 0.98871 1.21267 0.90454 1.00770 1.06606 1.18939 0.90716 0.85191 0.95919 1.86282 1.35775 1.13274 1.87526 1.23457 0.98998 0.82925 1.02860 0.91604 0.85665 0.91449 0.85703 0.75230 0.87828 0.86449 0.88662 0.90367 0.87239 0.81805 0.80539 0.90889 0.90886 0.86970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.57 113.37 1.20 1.95 16 2 O -0.37 -12.49 9.81 -56.70 -0.56 -13.05 16 3 C 0.51 18.23 7.89 70.24 0.55 18.78 16 4 O -0.52 -19.60 14.94 26.85 0.40 -19.20 16 5 C -0.15 -5.26 5.88 -20.03 -0.12 -5.37 16 6 C -0.08 -3.02 7.45 22.68 0.17 -2.85 16 7 C 0.14 4.56 6.02 38.10 0.23 4.79 16 8 N -0.68 -24.42 5.47 -180.67 -0.99 -25.41 16 9 C 0.18 8.17 5.88 38.17 0.22 8.40 16 10 C -0.27 -11.63 7.79 22.60 0.18 -11.46 16 11 C -0.07 -3.15 10.02 22.20 0.22 -2.92 16 12 C -0.26 -12.87 9.79 22.76 0.22 -12.65 16 13 C 0.10 5.33 5.58 -21.31 -0.12 5.21 16 14 C -0.50 -26.58 9.06 23.46 0.21 -26.36 16 15 H 0.07 3.85 7.89 -2.91 -0.02 3.83 16 16 C 0.04 1.83 5.18 85.25 0.44 2.28 16 17 N -0.82 -42.27 10.84 21.82 0.24 -42.03 16 18 Si 0.98 37.78 29.59 68.60 2.03 39.81 16 19 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 20 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 22 C -0.22 -11.23 8.59 22.86 0.20 -11.03 16 23 C -0.09 -2.02 9.92 22.43 0.22 -1.80 16 24 C -0.17 -3.67 9.02 22.32 0.20 -3.47 16 25 C 0.14 3.99 6.70 22.84 0.15 4.14 16 26 O -0.32 -8.63 8.56 -69.49 -0.59 -9.23 16 27 C 0.01 0.17 9.81 113.37 1.11 1.29 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.13 5.20 5.92 -2.91 -0.02 5.18 16 32 H 0.41 12.85 8.89 -92.71 -0.82 12.03 16 33 H 0.10 4.22 6.60 -2.91 -0.02 4.20 16 34 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 36 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 37 H 0.11 5.79 6.08 -2.91 -0.02 5.78 16 38 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 39 H 0.18 2.25 6.29 -2.91 -0.02 2.23 16 40 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 41 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 42 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -68.08 357.71 6.08 -62.00 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: 0.25 Total: 38.19 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 5.30 Total: -31.09 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -0.75 Total: -67.44 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -0.75 Total: -41.47 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -68.08 6.08 -62.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215092346.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.622 kcal (2) G-P(sol) polarization free energy of solvation -68.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds