Wall clock time and date at job start Tue Mar 31 2020 14:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.35589 * 117.00192 * 2 1 4 4 C 1.38540 * 120.07356 * 0.02562 * 3 2 1 5 5 C 1.37987 * 120.32333 * 179.70126 * 4 3 2 6 6 C 1.40021 * 120.45882 * 0.04067 * 5 4 3 7 7 C 1.48192 * 119.92642 * 180.02562 * 6 5 4 8 8 C 1.39482 * 120.00116 * 129.72798 * 7 6 5 9 9 C 1.37644 * 120.08330 * 179.78678 * 8 7 6 10 10 C 1.39749 * 120.09257 * 0.46493 * 9 8 7 11 11 C 1.47710 * 119.99713 * 179.76513 * 10 9 8 12 12 N 1.34774 * 119.99878 * 0.02562 * 11 10 9 13 13 O 1.21575 * 120.00106 * 180.02562 * 11 10 9 14 14 C 1.39628 * 120.00754 * 359.79266 * 10 9 8 15 15 C 1.38221 * 119.91587 * 359.96942 * 14 10 9 16 16 O 1.35872 * 120.04832 * 180.02562 * 15 14 10 17 17 C 1.42899 * 116.99725 * 359.97438 * 16 15 14 18 18 C 1.38717 * 120.14345 * 359.97438 * 6 5 4 19 19 C 1.40492 * 119.68319 * 359.97438 * 18 6 5 20 20 C 1.41186 * 120.23276 * 180.02562 * 19 18 6 21 21 H 1.07998 * 120.00021 * 154.46203 * 20 19 18 22 22 C 1.39909 * 119.99802 * 334.46854 * 20 19 18 23 23 N 1.30879 * 119.99928 * 343.15066 * 22 20 19 24 24 Si 1.86794 * 120.00164 * 163.15674 * 22 20 19 25 25 H 1.48507 * 109.47185 * 59.99938 * 24 22 20 26 26 H 1.48503 * 109.47315 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47222 * 299.99929 * 24 22 20 28 28 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47356 * 299.99374 * 1 2 3 30 30 H 1.09005 * 109.47623 * 59.99685 * 1 2 3 31 31 H 1.08011 * 119.83994 * 359.72728 * 4 3 2 32 32 H 1.07998 * 119.77237 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.96156 * 0.02562 * 8 7 6 34 34 H 1.08000 * 119.95469 * 180.20712 * 9 8 7 35 35 H 0.96996 * 120.00470 * 0.02562 * 12 11 10 36 36 H 0.97004 * 120.00237 * 179.97438 * 12 11 10 37 37 H 1.08003 * 120.04122 * 179.97438 * 14 10 9 38 38 H 1.09003 * 109.46805 * 179.97438 * 17 16 15 39 39 H 1.08995 * 109.47578 * 300.00099 * 17 16 15 40 40 H 1.09004 * 109.47181 * 60.00247 * 17 16 15 41 41 H 1.08003 * 120.16470 * 180.02562 * 18 6 5 42 42 H 0.96992 * 120.00332 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0445 1.2081 0.0000 4 6 1.2915 2.3710 0.0005 5 6 1.9126 3.6031 0.0067 6 6 3.3099 3.6937 0.0117 7 6 3.9646 5.0231 0.0190 8 6 4.9622 5.3041 0.9523 9 6 5.5746 6.5368 0.9578 10 6 5.1916 7.5135 0.0344 11 6 5.8465 8.8374 0.0455 12 7 6.8137 9.1033 0.9457 13 8 5.5131 9.6873 -0.7574 14 6 4.1896 7.2381 -0.8982 15 6 3.5779 5.9987 -0.9071 16 8 2.6029 5.7276 -1.8138 17 6 2.2595 6.7706 -2.7283 18 6 4.0826 2.5416 0.0110 19 6 3.4564 1.2839 0.0058 20 6 4.2316 0.1039 0.0055 21 1 3.8213 -0.8117 0.4051 22 6 5.5312 0.1208 -0.5123 23 7 5.9158 1.1062 -1.2830 24 14 6.7175 -1.2630 -0.1037 25 1 6.1575 -2.5525 -0.5821 26 1 8.0201 -1.0117 -0.7711 27 1 6.9178 -1.3254 1.3664 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2129 2.3129 -0.0035 32 1 1.3169 4.5040 0.0075 33 1 5.2574 4.5522 1.6693 34 1 6.3491 6.7511 1.6792 35 1 7.0800 8.4252 1.5860 36 1 7.2440 9.9726 0.9527 37 1 3.8929 7.9926 -1.6117 38 1 1.4707 6.4234 -3.3956 39 1 1.9091 7.6403 -2.1726 40 1 3.1370 7.0433 -3.3146 41 1 5.1603 2.6110 0.0152 42 1 6.8169 1.1182 -1.6417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222563977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:43 Heat of formation + Delta-G solvation = -67.751695 kcal Electronic energy + Delta-G solvation = -27150.473354 eV Core-core repulsion = 23253.867944 eV Total energy + Delta-G solvation = -3896.605411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.28771 -39.09361 -38.54762 -36.98141 -35.94177 -33.89084 -33.63833 -31.52803 -30.05356 -29.68129 -28.11120 -27.05675 -26.50997 -25.16140 -23.64968 -21.97887 -20.89957 -20.84108 -19.84354 -18.43659 -17.41072 -17.26489 -16.54203 -16.07303 -15.69958 -15.51565 -15.41008 -15.05237 -14.66771 -14.65972 -14.49052 -14.06606 -13.74909 -13.46403 -13.09685 -12.75022 -12.68238 -12.45796 -12.13253 -11.70586 -11.55476 -11.39702 -11.20602 -11.14252 -10.88239 -10.84761 -10.77887 -10.47496 -10.10838 -9.94148 -9.84230 -9.81462 -9.48225 -9.16564 -8.65234 -8.00003 -7.49174 -6.85417 -6.63300 -4.23430 0.95513 1.66200 2.66350 2.83074 3.08857 3.10243 3.13599 3.23657 3.43523 3.61308 3.98380 4.08741 4.48903 4.61967 4.80552 5.07032 5.11148 5.22840 5.34369 5.36995 5.54288 5.62051 5.67067 5.75670 5.82888 5.92781 5.97669 6.05419 6.14474 6.32742 6.37399 6.46097 6.61391 6.67135 6.85665 6.95660 7.11534 7.25303 7.29605 7.32799 7.61855 7.68201 7.76248 7.97579 8.17280 8.19064 8.37439 8.68866 8.85596 9.05328 10.24858 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.003961 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.409172 B = 7066.407918 C = 8686.367162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.023 3.977 4 C -0.183 4.183 5 C -0.166 4.166 6 C -0.075 4.075 7 C 0.001 3.999 8 C -0.089 4.089 9 C -0.118 4.118 10 C -0.128 4.128 11 C 0.569 3.431 12 N -0.853 5.853 13 O -0.549 6.549 14 C -0.150 4.150 15 C 0.121 3.879 16 O -0.294 6.294 17 C 0.024 3.976 18 C -0.118 4.118 19 C 0.093 3.907 20 C -0.448 4.448 21 H 0.082 0.918 22 C 0.074 3.926 23 N -0.799 5.799 24 Si 0.908 3.092 25 H -0.266 1.266 26 H -0.280 1.280 27 H -0.264 1.264 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.138 0.862 34 H 0.123 0.877 35 H 0.402 0.598 36 H 0.402 0.598 37 H 0.137 0.863 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.129 0.871 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 9.327 3.549 10.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C -0.021 4.021 4 C -0.202 4.202 5 C -0.186 4.186 6 C -0.075 4.075 7 C 0.000 4.000 8 C -0.107 4.107 9 C -0.137 4.137 10 C -0.131 4.131 11 C 0.356 3.644 12 N -0.417 5.417 13 O -0.428 6.428 14 C -0.169 4.169 15 C 0.075 3.925 16 O -0.206 6.206 17 C -0.071 4.071 18 C -0.138 4.138 19 C 0.090 3.910 20 C -0.478 4.478 21 H 0.100 0.900 22 C -0.143 4.143 23 N -0.425 5.425 24 Si 0.732 3.268 25 H -0.191 1.191 26 H -0.205 1.205 27 H -0.189 1.189 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.232 0.768 36 H 0.232 0.768 37 H 0.154 0.846 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.146 0.854 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.796 9.455 2.781 9.888 hybrid contribution 0.670 -0.096 0.209 0.708 sum -0.126 9.359 2.990 9.826 Atomic orbital electron populations 1.22742 0.81713 1.01741 0.99977 1.85954 1.18250 1.28336 1.89994 1.19374 0.92415 0.82599 1.07748 1.20531 0.97439 0.92703 1.09514 1.20068 0.92681 0.95301 1.10533 1.18222 0.92915 0.90049 1.06351 1.18699 0.95302 0.93148 0.92819 1.21073 0.95097 0.96352 0.98151 1.21001 1.00436 0.93529 0.98725 1.19426 1.00138 0.93841 0.99743 1.18317 0.78845 0.87330 0.79875 1.43748 1.40950 1.19601 1.37370 1.90779 1.64119 1.48397 1.39495 1.21137 0.98381 0.96395 1.01029 1.18934 0.90178 0.92573 0.90784 1.86287 1.51499 1.39586 1.43267 1.23054 1.00912 0.90862 0.92314 1.21174 0.99296 0.89393 1.03952 1.16921 0.87244 0.93846 0.92944 1.19343 0.96922 0.96590 1.34963 0.90034 1.25855 0.98757 0.96879 0.92768 1.69825 1.19230 1.30809 1.22664 0.86376 0.78971 0.81638 0.79792 1.19064 1.20480 1.18890 0.90040 0.94197 0.94094 0.88444 0.88873 0.84461 0.85940 0.76807 0.76780 0.84571 0.88403 0.92986 0.92863 0.85359 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.81 101.05 0.99 1.57 16 2 O -0.31 -7.13 9.77 -18.46 -0.18 -7.31 16 3 C 0.02 0.57 6.72 -38.27 -0.26 0.31 16 4 C -0.18 -4.07 9.01 -39.56 -0.36 -4.42 16 5 C -0.17 -3.67 8.76 -39.01 -0.34 -4.01 16 6 C -0.07 -1.69 5.26 -104.96 -0.55 -2.25 16 7 C 0.00 0.02 5.48 -104.70 -0.57 -0.55 16 8 C -0.09 -1.46 9.47 -39.34 -0.37 -1.83 16 9 C -0.12 -1.60 9.52 -39.23 -0.37 -1.98 16 10 C -0.13 -1.91 5.87 -104.94 -0.62 -2.53 16 11 C 0.57 7.96 8.04 -12.39 -0.10 7.86 16 12 N -0.85 -7.78 8.82 30.50 0.27 -7.51 16 13 O -0.55 -9.52 17.17 5.30 0.09 -9.43 16 14 C -0.15 -2.45 8.57 -39.07 -0.33 -2.78 16 15 C 0.12 2.21 6.58 -38.94 -0.26 1.95 16 16 O -0.29 -5.32 8.80 -19.34 -0.17 -5.49 16 17 C 0.02 0.31 9.81 101.05 0.99 1.30 16 18 C -0.12 -2.95 8.11 -38.56 -0.31 -3.27 16 19 C 0.09 2.45 5.57 -106.73 -0.59 1.86 16 20 C -0.45 -11.91 8.71 -37.84 -0.33 -12.24 16 21 H 0.08 2.16 7.65 -52.49 -0.40 1.75 16 22 C 0.07 1.84 5.15 -17.33 -0.09 1.75 16 23 N -0.80 -20.46 10.97 55.55 0.61 -19.85 16 24 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 31 H 0.10 1.89 6.27 -52.48 -0.33 1.56 16 32 H 0.09 1.91 7.65 -52.49 -0.40 1.51 16 33 H 0.14 2.13 8.03 -52.49 -0.42 1.71 16 34 H 0.12 1.16 6.38 -52.49 -0.33 0.83 16 35 H 0.40 2.65 6.84 -40.82 -0.28 2.37 16 36 H 0.40 2.94 8.93 -40.82 -0.36 2.58 16 37 H 0.14 2.10 5.86 -52.48 -0.31 1.79 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 40 H 0.05 0.65 7.66 -51.93 -0.40 0.26 16 41 H 0.13 3.27 6.17 -52.48 -0.32 2.95 16 42 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 355.87 15.07 5.36 5.36 Total: -1.00 -32.21 355.87 -7.26 -39.47 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -4.73 Total: 10.35 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -3.48 Total: -19.25 kcal Atomic # 7 Polarization: -28.24 SS G_CDS: 0.88 Total: -27.37 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.26 Total: -22.23 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.21 -7.26 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222563977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.278 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds