Wall clock time and date at job start Tue Mar 31 2020 14:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.35589 * 117.00192 * 2 1 4 4 C 1.38540 * 120.07356 * 0.02562 * 3 2 1 5 5 C 1.37987 * 120.32333 * 179.70126 * 4 3 2 6 6 C 1.40021 * 120.45882 * 0.04067 * 5 4 3 7 7 C 1.48192 * 119.92642 * 180.02562 * 6 5 4 8 8 C 1.39482 * 120.00116 * 129.72798 * 7 6 5 9 9 C 1.37644 * 120.08330 * 179.78678 * 8 7 6 10 10 C 1.39749 * 120.09257 * 0.46493 * 9 8 7 11 11 C 1.47710 * 119.99713 * 179.76513 * 10 9 8 12 12 N 1.34774 * 119.99878 * 0.02562 * 11 10 9 13 13 O 1.21575 * 120.00106 * 180.02562 * 11 10 9 14 14 C 1.39628 * 120.00754 * 359.79266 * 10 9 8 15 15 C 1.38221 * 119.91587 * 359.96942 * 14 10 9 16 16 O 1.35872 * 120.04832 * 180.02562 * 15 14 10 17 17 C 1.42899 * 116.99725 * 359.97438 * 16 15 14 18 18 C 1.38717 * 120.14345 * 359.97438 * 6 5 4 19 19 C 1.40492 * 119.68319 * 359.97438 * 18 6 5 20 20 C 1.41186 * 120.23276 * 180.02562 * 19 18 6 21 21 H 1.07998 * 120.00021 * 154.46203 * 20 19 18 22 22 C 1.39909 * 119.99802 * 334.46854 * 20 19 18 23 23 N 1.30879 * 119.99928 * 343.15066 * 22 20 19 24 24 Si 1.86794 * 120.00164 * 163.15674 * 22 20 19 25 25 H 1.48507 * 109.47185 * 59.99938 * 24 22 20 26 26 H 1.48503 * 109.47315 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47222 * 299.99929 * 24 22 20 28 28 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47356 * 299.99374 * 1 2 3 30 30 H 1.09005 * 109.47623 * 59.99685 * 1 2 3 31 31 H 1.08011 * 119.83994 * 359.72728 * 4 3 2 32 32 H 1.07998 * 119.77237 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.96156 * 0.02562 * 8 7 6 34 34 H 1.08000 * 119.95469 * 180.20712 * 9 8 7 35 35 H 0.96996 * 120.00470 * 0.02562 * 12 11 10 36 36 H 0.97004 * 120.00237 * 179.97438 * 12 11 10 37 37 H 1.08003 * 120.04122 * 179.97438 * 14 10 9 38 38 H 1.09003 * 109.46805 * 179.97438 * 17 16 15 39 39 H 1.08995 * 109.47578 * 300.00099 * 17 16 15 40 40 H 1.09004 * 109.47181 * 60.00247 * 17 16 15 41 41 H 1.08003 * 120.16470 * 180.02562 * 18 6 5 42 42 H 0.96992 * 120.00332 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0445 1.2081 0.0000 4 6 1.2915 2.3710 0.0005 5 6 1.9126 3.6031 0.0067 6 6 3.3099 3.6937 0.0117 7 6 3.9646 5.0231 0.0190 8 6 4.9622 5.3041 0.9523 9 6 5.5746 6.5368 0.9578 10 6 5.1916 7.5135 0.0344 11 6 5.8465 8.8374 0.0455 12 7 6.8137 9.1033 0.9457 13 8 5.5131 9.6873 -0.7574 14 6 4.1896 7.2381 -0.8982 15 6 3.5779 5.9987 -0.9071 16 8 2.6029 5.7276 -1.8138 17 6 2.2595 6.7706 -2.7283 18 6 4.0826 2.5416 0.0110 19 6 3.4564 1.2839 0.0058 20 6 4.2316 0.1039 0.0055 21 1 3.8213 -0.8117 0.4051 22 6 5.5312 0.1208 -0.5123 23 7 5.9158 1.1062 -1.2830 24 14 6.7175 -1.2630 -0.1037 25 1 6.1575 -2.5525 -0.5821 26 1 8.0201 -1.0117 -0.7711 27 1 6.9178 -1.3254 1.3664 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2129 2.3129 -0.0035 32 1 1.3169 4.5040 0.0075 33 1 5.2574 4.5522 1.6693 34 1 6.3491 6.7511 1.6792 35 1 7.0800 8.4252 1.5860 36 1 7.2440 9.9726 0.9527 37 1 3.8929 7.9926 -1.6117 38 1 1.4707 6.4234 -3.3956 39 1 1.9091 7.6403 -2.1726 40 1 3.1370 7.0433 -3.3146 41 1 5.1603 2.6110 0.0152 42 1 6.8169 1.1182 -1.6417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222563977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:42 Heat of formation + Delta-G solvation = -89.484255 kcal Electronic energy + Delta-G solvation = -27151.415749 eV Core-core repulsion = 23253.867944 eV Total energy + Delta-G solvation = -3897.547805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.53576 -40.44219 -40.07823 -38.34500 -37.52860 -35.55493 -34.79713 -32.96704 -31.68404 -31.09984 -29.64003 -28.19859 -27.98698 -26.96425 -24.98860 -23.33985 -22.52126 -22.21674 -21.31863 -19.63170 -19.10822 -18.33283 -18.22840 -17.29974 -17.19717 -16.79568 -16.70090 -16.58164 -16.23658 -16.09995 -15.77263 -15.20339 -15.15338 -14.89712 -14.52492 -14.39658 -14.26039 -13.80280 -13.55203 -13.37790 -12.98936 -12.85062 -12.73613 -12.60222 -12.41069 -12.27101 -12.09138 -12.00739 -11.67280 -11.54827 -11.26275 -11.16295 -10.99900 -10.74146 -9.99517 -9.38409 -9.30425 -8.63032 -8.39841 -6.17888 -0.32842 0.41643 0.98194 1.06203 1.41275 1.51423 1.54971 1.85290 2.26863 2.36740 2.53258 2.72540 2.88086 2.93986 3.65526 3.72528 3.88506 3.99287 4.12101 4.17401 4.34671 4.35965 4.43945 4.45327 4.50548 4.61040 4.64753 4.69875 4.75848 4.81017 5.07075 5.11139 5.17619 5.24191 5.34009 5.47469 5.53595 5.69440 5.86136 5.87300 5.90418 6.15950 6.33484 6.38479 6.45516 6.54174 6.82706 6.96517 7.25421 7.25920 8.42421 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.003961 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.409172 B = 7066.407918 C = 8686.367162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.338 6.338 3 C 0.007 3.993 4 C -0.184 4.184 5 C -0.166 4.166 6 C -0.072 4.072 7 C -0.039 4.039 8 C -0.091 4.091 9 C -0.100 4.100 10 C -0.125 4.125 11 C 0.569 3.431 12 N -0.825 5.825 13 O -0.587 6.587 14 C -0.155 4.155 15 C 0.113 3.887 16 O -0.323 6.323 17 C 0.017 3.983 18 C -0.136 4.136 19 C 0.057 3.943 20 C -0.486 4.486 21 H 0.068 0.932 22 C 0.037 3.963 23 N -0.831 5.831 24 Si 0.977 3.023 25 H -0.266 1.266 26 H -0.267 1.267 27 H -0.258 1.258 28 H 0.111 0.889 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.141 0.859 34 H 0.171 0.829 35 H 0.418 0.582 36 H 0.415 0.585 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.115 0.885 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 10.751 4.483 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.253 6.253 3 C -0.038 4.038 4 C -0.202 4.202 5 C -0.185 4.185 6 C -0.072 4.072 7 C -0.040 4.040 8 C -0.109 4.109 9 C -0.119 4.119 10 C -0.128 4.128 11 C 0.356 3.644 12 N -0.389 5.389 13 O -0.468 6.468 14 C -0.175 4.175 15 C 0.068 3.932 16 O -0.237 6.237 17 C -0.077 4.077 18 C -0.155 4.155 19 C 0.054 3.946 20 C -0.516 4.516 21 H 0.086 0.914 22 C -0.176 4.176 23 N -0.458 5.458 24 Si 0.798 3.202 25 H -0.191 1.191 26 H -0.192 1.192 27 H -0.182 1.182 28 H 0.130 0.870 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.144 0.856 32 H 0.127 0.873 33 H 0.158 0.842 34 H 0.188 0.812 35 H 0.251 0.749 36 H 0.248 0.752 37 H 0.161 0.839 38 H 0.135 0.865 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.132 0.868 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.118 10.892 3.750 11.520 hybrid contribution 0.351 -0.372 -0.075 0.517 sum 0.234 10.520 3.676 11.146 Atomic orbital electron populations 1.23087 0.78670 1.04183 1.00965 1.85897 1.21476 1.27940 1.90035 1.19535 0.92356 0.83877 1.08022 1.20837 0.98879 0.92018 1.08507 1.20374 0.92897 0.95872 1.09347 1.18478 0.93244 0.91069 1.04443 1.18754 0.97517 0.92339 0.95403 1.21223 0.94402 0.97691 0.97604 1.21365 1.00282 0.91615 0.98630 1.19716 0.99318 0.94712 0.99080 1.18177 0.79538 0.86396 0.80315 1.43516 1.38910 1.20662 1.35857 1.90774 1.65576 1.49186 1.41288 1.21255 0.98772 0.95781 1.01696 1.18976 0.90563 0.92870 0.90805 1.86223 1.51646 1.41857 1.43970 1.23324 1.01739 0.90583 0.92059 1.21095 0.98841 0.90024 1.05574 1.17336 0.88694 0.94498 0.94030 1.19455 0.98574 0.96448 1.37090 0.91358 1.26607 0.99688 0.99361 0.91958 1.69889 1.19850 1.32600 1.23438 0.85336 0.76896 0.78200 0.79756 1.19085 1.19151 1.18240 0.87048 0.92781 0.93288 0.85570 0.87289 0.84154 0.81168 0.74949 0.75218 0.83939 0.86505 0.91504 0.92400 0.86770 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.81 113.37 1.11 1.96 16 2 O -0.34 -15.85 9.77 -88.98 -0.87 -16.72 16 3 C 0.01 0.34 6.72 23.12 0.16 0.50 16 4 C -0.18 -8.21 9.01 22.28 0.20 -8.00 16 5 C -0.17 -7.38 8.76 22.64 0.20 -7.18 16 6 C -0.07 -3.34 5.26 -20.09 -0.11 -3.45 16 7 C -0.04 -1.54 5.48 -19.92 -0.11 -1.65 16 8 C -0.09 -2.93 9.47 22.43 0.21 -2.72 16 9 C -0.10 -2.46 9.52 22.49 0.21 -2.24 16 10 C -0.13 -3.45 5.87 -20.07 -0.12 -3.57 16 11 C 0.57 14.35 8.04 86.75 0.70 15.04 16 12 N -0.82 -11.83 8.82 -175.69 -1.55 -13.38 16 13 O -0.59 -19.25 17.17 -3.95 -0.07 -19.31 16 14 C -0.16 -4.92 8.57 22.60 0.19 -4.73 16 15 C 0.11 4.13 6.58 22.68 0.15 4.28 16 16 O -0.32 -11.74 8.80 -92.11 -0.81 -12.55 16 17 C 0.02 0.44 9.81 113.37 1.11 1.55 16 18 C -0.14 -7.09 8.11 22.93 0.19 -6.90 16 19 C 0.06 3.14 5.57 -21.23 -0.12 3.02 16 20 C -0.49 -27.13 8.71 23.40 0.20 -26.93 16 21 H 0.07 3.83 7.65 -2.91 -0.02 3.81 16 22 C 0.04 1.92 5.15 85.24 0.44 2.36 16 23 N -0.83 -44.12 10.97 21.82 0.24 -43.88 16 24 Si 0.98 39.18 29.59 68.60 2.03 41.21 16 25 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 26 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 27 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 28 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 29 H 0.05 1.60 7.66 -2.39 -0.02 1.58 16 30 H 0.05 1.50 7.65 -2.38 -0.02 1.49 16 31 H 0.13 4.75 6.27 -2.90 -0.02 4.73 16 32 H 0.11 4.44 7.65 -2.91 -0.02 4.42 16 33 H 0.14 4.33 8.03 -2.91 -0.02 4.31 16 34 H 0.17 2.41 6.38 -2.91 -0.02 2.39 16 35 H 0.42 3.51 6.84 -92.71 -0.63 2.87 16 36 H 0.42 4.48 8.93 -92.71 -0.83 3.66 16 37 H 0.14 4.26 5.86 -2.91 -0.02 4.24 16 38 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.07 1.47 7.66 -2.39 -0.02 1.45 16 40 H 0.06 1.39 7.66 -2.38 -0.02 1.37 16 41 H 0.11 6.16 6.17 -2.91 -0.02 6.14 16 42 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 Total: -1.00 -74.24 355.87 3.23 -71.01 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -0.36 Total: 32.29 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 4.62 Total: -38.66 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -1.31 Total: -57.27 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -1.75 Total: -48.59 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -74.24 3.23 -71.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222563977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.477 kcal (2) G-P(sol) polarization free energy of solvation -74.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds