Wall clock time and date at job start Tue Mar 31 2020 15:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34701 * 117.00152 * 2 1 4 4 O 1.21471 * 120.00054 * 0.02562 * 3 2 1 5 5 C 1.47721 * 120.00116 * 179.97438 * 3 2 1 6 6 C 1.40076 * 120.56277 * 353.74628 * 5 3 2 7 7 C 1.38343 * 118.28148 * 180.19444 * 6 5 3 8 8 C 1.38363 * 119.30857 * 359.53029 * 7 6 5 9 9 N 1.31929 * 121.09248 * 0.25524 * 8 7 6 10 10 C 1.31689 * 121.88350 * 359.97438 * 9 8 7 11 11 C 1.50707 * 119.71991 * 180.02562 * 10 9 8 12 12 O 1.42894 * 109.46990 * 263.28266 * 11 10 9 13 13 C 1.42908 * 114.00163 * 180.02562 * 12 11 10 14 14 H 1.09006 * 109.46764 * 29.99457 * 13 12 11 15 15 C 1.50701 * 109.46845 * 269.99795 * 13 12 11 16 16 H 1.07997 * 120.00256 * 325.10900 * 15 13 12 17 17 C 1.37875 * 120.00002 * 145.10668 * 15 13 12 18 18 N 1.31515 * 119.99977 * 355.73322 * 17 15 13 19 19 Si 1.86796 * 120.00392 * 175.72939 * 17 15 13 20 20 H 1.48504 * 109.46873 * 90.00321 * 19 17 15 21 21 H 1.48493 * 109.47677 * 210.00428 * 19 17 15 22 22 H 1.48503 * 109.46924 * 330.00834 * 19 17 15 23 23 C 1.50693 * 109.47509 * 149.99579 * 13 12 11 24 24 C 1.38239 * 119.99724 * 33.15931 * 23 13 12 25 25 C 1.38242 * 119.99681 * 179.80997 * 24 23 13 26 26 C 1.38239 * 119.99772 * 0.39444 * 25 24 23 27 27 C 1.38235 * 120.00249 * 359.86107 * 26 25 24 28 28 C 1.38235 * 120.00050 * 359.95207 * 27 26 25 29 29 H 1.09006 * 109.47554 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47330 * 299.99967 * 1 2 3 31 31 H 1.08998 * 109.47328 * 60.00397 * 1 2 3 32 32 H 1.07996 * 120.85820 * 359.97438 * 6 5 3 33 33 H 1.07996 * 120.34429 * 179.80762 * 7 6 5 34 34 H 1.07996 * 119.45676 * 180.23372 * 8 7 6 35 35 H 1.08998 * 109.46882 * 23.28239 * 11 10 9 36 36 H 1.08998 * 109.47234 * 143.27883 * 11 10 9 37 37 H 0.97001 * 120.00392 * 179.97438 * 18 17 15 38 38 H 1.07993 * 120.00153 * 359.97438 * 24 23 13 39 39 H 1.07996 * 120.00165 * 180.23298 * 25 24 23 40 40 H 1.07998 * 119.99586 * 179.83036 * 26 25 24 41 41 H 1.07993 * 119.99665 * 179.97438 * 27 26 25 42 42 H 1.07989 * 120.00294 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2189 0.0005 5 6 3.5387 1.2775 0.0006 6 6 4.3127 0.1174 0.1325 7 6 5.6903 0.2449 0.1311 8 6 6.2541 1.5006 -0.0090 9 7 5.5001 2.5757 -0.1360 10 6 4.1851 2.5070 -0.1361 11 6 3.3710 3.7665 -0.2851 12 8 2.9731 4.2319 1.0060 13 6 2.1914 5.4279 0.9773 14 1 1.6182 5.4651 0.0509 15 6 3.1028 6.6256 1.0526 16 1 4.0058 6.5808 1.6434 17 6 2.7840 7.7787 0.3672 18 7 1.7298 7.8064 -0.4186 19 14 3.8492 9.3017 0.5549 20 1 4.9225 9.2845 -0.4713 21 1 3.0131 10.5158 0.3763 22 1 4.4591 9.3154 1.9088 23 6 1.2481 5.4398 2.1524 24 6 1.6285 4.8634 3.3500 25 6 0.7647 4.8778 4.4291 26 6 -0.4827 5.4614 4.3083 27 6 -0.8651 6.0331 3.1092 28 6 0.0002 6.0221 2.0312 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.8461 -0.8510 0.2362 33 1 6.3190 -0.6272 0.2339 34 1 7.3293 1.6024 -0.0142 35 1 3.9717 4.5311 -0.7777 36 1 2.4853 3.5579 -0.8850 37 1 1.5053 8.6177 -0.9006 38 1 2.6015 4.4043 3.4432 39 1 1.0632 4.4309 5.3659 40 1 -1.1586 5.4702 5.1506 41 1 -1.8397 6.4886 3.0147 42 1 -0.2983 6.4690 1.0945 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223437359.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:47 Heat of formation + Delta-G solvation = -57.228554 kcal Electronic energy + Delta-G solvation = -27780.881244 eV Core-core repulsion = 23884.732151 eV Total energy + Delta-G solvation = -3896.149093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.80311 -39.44837 -38.32500 -36.64814 -36.02299 -33.05707 -32.74970 -31.86455 -30.41542 -29.89342 -27.97958 -26.78361 -25.89503 -24.49589 -22.95703 -21.99150 -21.43923 -21.10572 -20.06149 -17.87701 -17.09121 -16.72691 -16.43140 -16.29518 -16.02671 -15.76107 -15.44332 -14.56528 -14.42961 -14.14603 -13.92542 -13.69569 -13.49443 -13.25252 -13.06205 -12.97626 -12.63971 -12.41427 -12.16551 -12.06759 -11.83853 -11.53779 -11.15090 -10.93689 -10.75403 -10.67674 -10.35842 -10.22799 -10.12076 -9.97229 -9.73766 -9.43700 -9.32477 -9.09115 -8.56143 -8.23080 -7.95768 -7.55111 -6.09553 -4.16486 0.57332 1.16733 2.38092 2.40732 2.68146 2.69865 3.30014 3.35837 3.41647 3.74647 4.27941 4.39098 4.62487 4.71222 4.77043 4.83067 4.99996 5.13189 5.22827 5.24092 5.31808 5.36425 5.57118 5.66755 5.72227 5.84752 5.89114 5.92424 5.96958 6.26115 6.43996 6.45387 6.52268 6.55205 6.65824 6.68519 6.98839 7.07965 7.30522 7.40560 7.55969 7.79306 7.83239 7.89962 7.99180 8.03036 8.21538 8.42896 9.06062 9.50524 10.94352 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009851 B = 0.005024 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.746731 B = 5571.716345 C = 7256.349176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.363 6.363 3 C 0.501 3.499 4 O -0.460 6.460 5 C -0.164 4.164 6 C -0.025 4.025 7 C -0.194 4.194 8 C 0.130 3.870 9 N -0.470 5.470 10 C 0.210 3.790 11 C 0.117 3.883 12 O -0.383 6.383 13 C 0.239 3.761 14 H 0.061 0.939 15 C -0.522 4.522 16 H 0.063 0.937 17 C 0.070 3.930 18 N -0.887 5.887 19 Si 0.897 3.103 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.020 4.020 24 C -0.111 4.111 25 C -0.134 4.134 26 C -0.153 4.153 27 C -0.131 4.131 28 C -0.108 4.108 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.162 0.838 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.265 0.735 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.966 -16.658 0.327 16.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.281 6.281 3 C 0.343 3.657 4 O -0.345 6.345 5 C -0.167 4.167 6 C -0.051 4.051 7 C -0.214 4.214 8 C -0.027 4.027 9 N -0.180 5.180 10 C 0.072 3.928 11 C 0.039 3.961 12 O -0.302 6.302 13 C 0.183 3.817 14 H 0.079 0.921 15 C -0.560 4.560 16 H 0.082 0.918 17 C -0.133 4.133 18 N -0.524 5.524 19 Si 0.724 3.276 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.021 4.021 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.171 4.171 27 C -0.149 4.149 28 C -0.126 4.126 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.179 0.821 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.048 -15.481 0.285 15.519 hybrid contribution -0.040 0.260 0.083 0.276 sum 1.009 -15.221 0.369 15.258 Atomic orbital electron populations 1.23245 0.75971 1.03310 1.03020 1.86478 1.23560 1.32982 1.85080 1.20894 0.88672 0.81745 0.74410 1.90973 1.66165 1.34829 1.42571 1.19995 0.90700 0.95674 1.10373 1.21860 0.93747 0.98183 0.91346 1.22118 0.95280 0.99577 1.04442 1.23130 1.00611 0.87815 0.91165 1.67769 1.05453 1.32127 1.12614 1.21627 0.89617 0.93760 0.87839 1.21086 0.96033 0.89890 0.89068 1.87674 1.73010 1.44979 1.24573 1.18798 0.88520 0.81390 0.93000 0.92085 1.21482 1.07668 0.97114 1.29745 0.91836 1.24980 0.95298 0.99057 0.93992 1.69886 1.26321 1.28400 1.27826 0.86512 0.80238 0.82039 0.78829 1.20415 1.21086 1.19639 1.20351 0.92943 0.92614 0.96165 1.20916 0.99275 0.99921 0.92792 1.20951 0.94816 1.01393 0.98104 1.20799 0.96837 1.02182 0.97328 1.20954 0.99211 1.01014 0.93718 1.21037 0.93329 0.99242 0.98968 0.88315 0.91599 0.91775 0.83567 0.84103 0.82099 0.91724 0.90717 0.92525 0.86807 0.87711 0.87774 0.87482 0.85751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.36 -4.84 9.91 -40.49 -0.40 -5.25 16 3 C 0.50 8.28 7.83 34.61 0.27 8.55 16 4 O -0.46 -9.20 12.74 -24.72 -0.31 -9.52 16 5 C -0.16 -2.59 5.89 -104.84 -0.62 -3.21 16 6 C -0.03 -0.30 9.74 -38.85 -0.38 -0.68 16 7 C -0.19 -1.96 10.10 -39.50 -0.40 -2.36 16 8 C 0.13 1.60 11.17 -17.46 -0.20 1.40 16 9 N -0.47 -8.06 10.26 -9.13 -0.09 -8.16 16 10 C 0.21 3.87 6.45 -82.15 -0.53 3.34 16 11 C 0.12 2.56 4.99 36.01 0.18 2.74 16 12 O -0.38 -9.44 8.47 -50.27 -0.43 -9.87 16 13 C 0.24 6.29 2.47 -29.04 -0.07 6.22 16 14 H 0.06 1.74 6.82 -51.93 -0.35 1.39 16 15 C -0.52 -14.70 8.62 -34.44 -0.30 -15.00 16 16 H 0.06 1.84 7.82 -52.49 -0.41 1.43 16 17 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 18 N -0.89 -24.95 12.77 55.43 0.71 -24.25 16 19 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 23 C -0.02 -0.50 5.00 -104.62 -0.52 -1.02 16 24 C -0.11 -2.52 9.35 -39.58 -0.37 -2.89 16 25 C -0.13 -2.65 10.05 -39.58 -0.40 -3.05 16 26 C -0.15 -2.88 10.05 -39.58 -0.40 -3.28 16 27 C -0.13 -2.63 10.05 -39.58 -0.40 -3.03 16 28 C -0.11 -2.52 9.69 -39.58 -0.38 -2.90 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.15 1.31 7.72 -52.49 -0.41 0.91 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.08 1.65 5.82 -51.93 -0.30 1.35 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.11 2.60 7.57 -52.49 -0.40 2.20 16 39 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 41 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.12 3.04 8.06 -52.49 -0.42 2.62 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -32.76 367.42 -8.78 -41.54 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.23 Total: 5.18 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -3.54 Total: -11.85 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.61 Total: -32.40 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -1.14 Total: -24.63 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.76 -8.78 -41.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223437359.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.685 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds