Wall clock time and date at job start Tue Mar 31 2020 15:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34701 * 117.00152 * 2 1 4 4 O 1.21471 * 120.00054 * 0.02562 * 3 2 1 5 5 C 1.47721 * 120.00116 * 179.97438 * 3 2 1 6 6 C 1.40076 * 120.56277 * 353.74628 * 5 3 2 7 7 C 1.38343 * 118.28148 * 180.19444 * 6 5 3 8 8 C 1.38363 * 119.30857 * 359.53029 * 7 6 5 9 9 N 1.31929 * 121.09248 * 0.25524 * 8 7 6 10 10 C 1.31689 * 121.88350 * 359.97438 * 9 8 7 11 11 C 1.50707 * 119.71991 * 180.02562 * 10 9 8 12 12 O 1.42894 * 109.46990 * 263.28266 * 11 10 9 13 13 C 1.42908 * 114.00163 * 180.02562 * 12 11 10 14 14 H 1.09006 * 109.46764 * 29.99457 * 13 12 11 15 15 C 1.50701 * 109.46845 * 269.99795 * 13 12 11 16 16 H 1.07997 * 120.00256 * 325.10900 * 15 13 12 17 17 C 1.37875 * 120.00002 * 145.10668 * 15 13 12 18 18 N 1.31515 * 119.99977 * 355.73322 * 17 15 13 19 19 Si 1.86796 * 120.00392 * 175.72939 * 17 15 13 20 20 H 1.48504 * 109.46873 * 90.00321 * 19 17 15 21 21 H 1.48493 * 109.47677 * 210.00428 * 19 17 15 22 22 H 1.48503 * 109.46924 * 330.00834 * 19 17 15 23 23 C 1.50693 * 109.47509 * 149.99579 * 13 12 11 24 24 C 1.38239 * 119.99724 * 33.15931 * 23 13 12 25 25 C 1.38242 * 119.99681 * 179.80997 * 24 23 13 26 26 C 1.38239 * 119.99772 * 0.39444 * 25 24 23 27 27 C 1.38235 * 120.00249 * 359.86107 * 26 25 24 28 28 C 1.38235 * 120.00050 * 359.95207 * 27 26 25 29 29 H 1.09006 * 109.47554 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47330 * 299.99967 * 1 2 3 31 31 H 1.08998 * 109.47328 * 60.00397 * 1 2 3 32 32 H 1.07996 * 120.85820 * 359.97438 * 6 5 3 33 33 H 1.07996 * 120.34429 * 179.80762 * 7 6 5 34 34 H 1.07996 * 119.45676 * 180.23372 * 8 7 6 35 35 H 1.08998 * 109.46882 * 23.28239 * 11 10 9 36 36 H 1.08998 * 109.47234 * 143.27883 * 11 10 9 37 37 H 0.97001 * 120.00392 * 179.97438 * 18 17 15 38 38 H 1.07993 * 120.00153 * 359.97438 * 24 23 13 39 39 H 1.07996 * 120.00165 * 180.23298 * 25 24 23 40 40 H 1.07998 * 119.99586 * 179.83036 * 26 25 24 41 41 H 1.07993 * 119.99665 * 179.97438 * 27 26 25 42 42 H 1.07989 * 120.00294 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2189 0.0005 5 6 3.5387 1.2775 0.0006 6 6 4.3127 0.1174 0.1325 7 6 5.6903 0.2449 0.1311 8 6 6.2541 1.5006 -0.0090 9 7 5.5001 2.5757 -0.1360 10 6 4.1851 2.5070 -0.1361 11 6 3.3710 3.7665 -0.2851 12 8 2.9731 4.2319 1.0060 13 6 2.1914 5.4279 0.9773 14 1 1.6182 5.4651 0.0509 15 6 3.1028 6.6256 1.0526 16 1 4.0058 6.5808 1.6434 17 6 2.7840 7.7787 0.3672 18 7 1.7298 7.8064 -0.4186 19 14 3.8492 9.3017 0.5549 20 1 4.9225 9.2845 -0.4713 21 1 3.0131 10.5158 0.3763 22 1 4.4591 9.3154 1.9088 23 6 1.2481 5.4398 2.1524 24 6 1.6285 4.8634 3.3500 25 6 0.7647 4.8778 4.4291 26 6 -0.4827 5.4614 4.3083 27 6 -0.8651 6.0331 3.1092 28 6 0.0002 6.0221 2.0312 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.8461 -0.8510 0.2362 33 1 6.3190 -0.6272 0.2339 34 1 7.3293 1.6024 -0.0142 35 1 3.9717 4.5311 -0.7777 36 1 2.4853 3.5579 -0.8850 37 1 1.5053 8.6177 -0.9006 38 1 2.6015 4.4043 3.4432 39 1 1.0632 4.4309 5.3659 40 1 -1.1586 5.4702 5.1506 41 1 -1.8397 6.4886 3.0147 42 1 -0.2983 6.4690 1.0945 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223437359.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:46 Heat of formation + Delta-G solvation = -76.793267 kcal Electronic energy + Delta-G solvation = -27781.729633 eV Core-core repulsion = 23884.732151 eV Total energy + Delta-G solvation = -3896.997483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.00962 -40.61583 -40.06194 -38.27166 -37.44560 -34.99365 -33.91109 -33.29471 -32.08692 -31.57389 -29.10800 -28.56099 -27.49016 -25.57795 -24.86454 -23.40711 -23.00783 -22.28229 -21.86147 -19.02790 -18.79884 -18.25827 -17.84656 -17.65107 -17.41422 -17.14792 -17.05560 -16.32721 -15.95347 -15.55014 -15.38829 -15.24170 -14.92313 -14.81566 -14.28807 -14.15660 -14.07587 -13.91121 -13.81728 -13.56950 -13.19847 -13.08499 -12.91363 -12.86250 -12.58779 -12.12526 -11.94527 -11.84426 -11.79703 -11.47169 -11.30819 -11.02933 -10.70394 -10.56546 -10.22027 -10.14029 -9.64333 -9.35273 -8.21736 -6.38426 -0.55901 0.12657 0.67964 0.72717 1.34376 1.35639 1.46815 1.47284 1.58426 2.33607 2.57167 2.95399 3.06819 3.19613 3.48606 3.68853 3.71773 3.86113 4.02787 4.21764 4.26632 4.31361 4.32746 4.38642 4.46039 4.52289 4.55539 4.64565 4.67293 4.72412 4.84608 4.93212 4.97326 5.04780 5.17351 5.27980 5.35021 5.37387 5.57004 5.59128 5.73079 5.82090 6.02195 6.09339 6.33108 6.40744 6.67479 6.87084 6.92559 7.32588 8.81053 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009851 B = 0.005024 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.746731 B = 5571.716345 C = 7256.349176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.350 6.350 3 C 0.501 3.499 4 O -0.510 6.510 5 C -0.179 4.179 6 C -0.016 4.016 7 C -0.162 4.162 8 C 0.124 3.876 9 N -0.510 5.510 10 C 0.176 3.824 11 C 0.124 3.876 12 O -0.389 6.389 13 C 0.249 3.751 14 H 0.021 0.979 15 C -0.544 4.544 16 H 0.046 0.954 17 C 0.026 3.974 18 N -0.911 5.911 19 Si 0.958 3.042 20 H -0.271 1.271 21 H -0.274 1.274 22 H -0.271 1.271 23 C -0.052 4.052 24 C -0.129 4.129 25 C -0.125 4.125 26 C -0.139 4.139 27 C -0.126 4.126 28 C -0.133 4.133 29 H 0.145 0.855 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.183 0.817 33 H 0.198 0.802 34 H 0.200 0.800 35 H 0.031 0.969 36 H 0.060 0.940 37 H 0.268 0.732 38 H 0.101 0.899 39 H 0.144 0.856 40 H 0.154 0.846 41 H 0.140 0.860 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 -19.362 2.632 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.267 6.267 3 C 0.345 3.655 4 O -0.399 6.399 5 C -0.183 4.183 6 C -0.041 4.041 7 C -0.181 4.181 8 C -0.032 4.032 9 N -0.221 5.221 10 C 0.039 3.961 11 C 0.047 3.953 12 O -0.309 6.309 13 C 0.193 3.807 14 H 0.039 0.961 15 C -0.581 4.581 16 H 0.064 0.936 17 C -0.174 4.174 18 N -0.549 5.549 19 Si 0.783 3.217 20 H -0.196 1.196 21 H -0.199 1.199 22 H -0.195 1.195 23 C -0.053 4.053 24 C -0.147 4.147 25 C -0.143 4.143 26 C -0.156 4.156 27 C -0.144 4.144 28 C -0.151 4.151 29 H 0.163 0.837 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.200 0.800 33 H 0.215 0.785 34 H 0.216 0.784 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.162 0.838 40 H 0.172 0.828 41 H 0.157 0.843 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.662 -18.223 2.585 18.481 hybrid contribution -0.217 0.895 -0.623 1.112 sum 1.445 -17.328 1.962 17.499 Atomic orbital electron populations 1.23562 0.74393 1.05975 1.02203 1.86466 1.25013 1.30913 1.84289 1.21218 0.89220 0.81916 0.73124 1.90963 1.67251 1.36592 1.45050 1.20007 0.90550 0.96222 1.11475 1.22309 0.94352 0.97814 0.89638 1.22700 0.94934 1.00304 1.00134 1.23874 1.01945 0.87624 0.89790 1.67613 1.05088 1.35267 1.14085 1.20998 0.90325 0.92916 0.91877 1.20917 0.95566 0.91216 0.87648 1.87628 1.72658 1.44349 1.26253 1.18502 0.88323 0.81581 0.92299 0.96143 1.21594 1.07747 0.98551 1.30219 0.93570 1.25726 0.96561 1.01662 0.93494 1.70010 1.27499 1.29122 1.28277 0.85558 0.78797 0.78608 0.78778 1.19614 1.19865 1.19538 1.20314 0.93641 0.94930 0.96417 1.20922 0.99759 1.00682 0.93354 1.21358 0.94431 1.00250 0.98256 1.21320 0.96851 0.99578 0.97889 1.21311 0.99709 1.00278 0.93055 1.20989 0.94015 1.00582 0.99542 0.83726 0.92809 0.92378 0.79971 0.78515 0.78374 0.95072 0.92229 0.92275 0.88066 0.83807 0.82847 0.84256 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.56 113.37 1.20 1.85 16 2 O -0.35 -9.12 9.91 -56.11 -0.56 -9.67 16 3 C 0.50 17.36 7.83 70.33 0.55 17.91 16 4 O -0.51 -22.38 12.74 25.17 0.32 -22.06 16 5 C -0.18 -5.77 5.89 -20.00 -0.12 -5.88 16 6 C -0.02 -0.32 9.74 22.74 0.22 -0.10 16 7 C -0.16 -2.54 10.10 22.32 0.23 -2.31 16 8 C 0.12 2.76 11.17 84.71 0.95 3.71 16 9 N -0.51 -18.07 10.26 -182.80 -1.88 -19.94 16 10 C 0.18 6.97 6.45 42.90 0.28 7.25 16 11 C 0.12 6.12 4.99 71.24 0.36 6.48 16 12 O -0.39 -21.27 8.47 -134.60 -1.14 -22.41 16 13 C 0.25 14.47 2.47 29.10 0.07 14.55 16 14 H 0.02 1.33 6.82 -2.38 -0.02 1.31 16 15 C -0.54 -33.10 8.62 25.60 0.22 -32.87 16 16 H 0.05 2.88 7.82 -2.91 -0.02 2.86 16 17 C 0.03 1.54 5.46 84.65 0.46 2.00 16 18 N -0.91 -54.78 12.77 21.45 0.27 -54.50 16 19 Si 0.96 46.25 29.54 68.60 2.03 48.27 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 23 C -0.05 -2.78 5.00 -19.87 -0.10 -2.88 16 24 C -0.13 -6.06 9.35 22.27 0.21 -5.86 16 25 C -0.13 -4.68 10.05 22.27 0.22 -4.45 16 26 C -0.14 -4.75 10.05 22.27 0.22 -4.53 16 27 C -0.13 -4.91 10.05 22.27 0.22 -4.69 16 28 C -0.13 -6.57 9.69 22.27 0.22 -6.35 16 29 H 0.14 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.18 2.39 7.72 -2.91 -0.02 2.37 16 33 H 0.20 1.00 8.06 -2.91 -0.02 0.97 16 34 H 0.20 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 3.05 5.82 -2.39 -0.01 3.03 16 37 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.10 4.89 7.57 -2.91 -0.02 4.87 16 39 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 40 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 41 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 42 H 0.10 5.24 8.06 -2.92 -0.02 5.22 16 Total: -1.00 -82.13 367.42 5.49 -76.64 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 1.03 Total: 19.85 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 5.41 Total: -16.18 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.60 Total: -74.45 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -1.38 Total: -54.14 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -82.13 5.49 -76.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223437359.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.150 kcal (2) G-P(sol) polarization free energy of solvation -82.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds