Wall clock time and date at job start Tue Mar 31 2020 14:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36000 * 117.00505 * 2 1 4 4 C 1.38218 * 119.99622 * 0.02562 * 3 2 1 5 5 C 1.39690 * 119.84891 * 179.97438 * 4 3 2 6 6 C 1.47528 * 120.07512 * 179.97438 * 5 4 3 7 7 N 1.29390 * 119.99983 * 180.02562 * 6 5 4 8 8 O 1.41597 * 120.00355 * 179.97438 * 7 6 5 9 9 C 1.39680 * 119.84678 * 0.02562 * 5 4 3 10 10 C 1.37879 * 119.99689 * 359.71586 * 9 5 4 11 11 C 1.38754 * 120.15138 * 0.53860 * 10 9 5 12 12 O 1.35896 * 119.92382 * 179.76021 * 11 10 9 13 13 C 1.42901 * 116.99684 * 354.54011 * 12 11 10 14 14 H 1.09001 * 109.46891 * 324.29502 * 13 12 11 15 15 C 1.50700 * 109.47528 * 84.29770 * 13 12 11 16 16 H 1.08001 * 119.99901 * 239.99904 * 15 13 12 17 17 C 1.37876 * 120.00056 * 59.99518 * 15 13 12 18 18 N 1.31508 * 119.99923 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00016 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47069 * 60.00111 * 19 17 15 21 21 H 1.48498 * 109.47164 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46889 * 300.00074 * 19 17 15 23 23 C 1.50706 * 109.46824 * 204.29933 * 13 12 11 24 24 C 1.38231 * 119.99968 * 324.71619 * 23 13 12 25 25 C 1.38231 * 120.00156 * 179.80688 * 24 23 13 26 26 C 1.38236 * 119.99690 * 0.41318 * 25 24 23 27 27 C 1.38234 * 120.00066 * 359.84416 * 26 25 24 28 28 C 1.38232 * 120.00035 * 359.96145 * 27 26 25 29 29 H 1.08996 * 109.47232 * 300.00400 * 1 2 3 30 30 H 1.09006 * 109.46679 * 59.99985 * 1 2 3 31 31 H 1.08996 * 109.47347 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.07285 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.99706 * 359.97438 * 6 5 4 34 34 H 0.96696 * 114.00645 * 179.97438 * 8 7 6 35 35 H 1.07994 * 119.99715 * 179.97438 * 9 5 4 36 36 H 1.07999 * 119.92152 * 180.27824 * 10 9 5 37 37 H 0.97002 * 120.00144 * 179.97438 * 18 17 15 38 38 H 1.08000 * 119.99949 * 0.02562 * 24 23 13 39 39 H 1.08001 * 120.00148 * 180.23402 * 25 24 23 40 40 H 1.08004 * 119.99714 * 179.83192 * 26 25 24 41 41 H 1.08001 * 119.99818 * 179.97438 * 27 26 25 42 42 H 1.08003 * 119.99973 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2937 2.3709 0.0005 5 6 1.9312 3.6139 0.0011 6 6 1.1326 4.8543 0.0011 7 7 1.7246 6.0049 0.0011 8 8 0.9582 7.1955 0.0005 9 6 3.3265 3.6795 0.0005 10 6 4.0712 2.5192 0.0054 11 6 3.4379 1.2846 -0.0005 12 8 4.1764 0.1438 -0.0006 13 6 5.5934 0.2885 -0.1157 14 1 5.8208 1.1251 -0.7764 15 6 6.1842 0.5490 1.2460 16 1 6.7323 1.4609 1.4314 17 6 6.0247 -0.3768 2.2552 18 7 5.3576 -1.4874 2.0294 19 14 6.7563 -0.0537 3.9433 20 1 6.1751 1.1923 4.5044 21 1 6.4472 -1.1937 4.8433 22 1 8.2288 0.0970 3.8240 23 6 6.1828 -0.9761 -0.6854 24 6 5.6380 -2.2027 -0.3545 25 6 6.1761 -3.3624 -0.8802 26 6 7.2643 -3.2961 -1.7301 27 6 7.8124 -2.0698 -2.0568 28 6 7.2718 -0.9098 -1.5343 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2152 2.3158 0.0014 33 1 0.0539 4.8020 0.0002 34 1 1.4881 8.0044 0.0010 35 1 3.8218 4.6392 0.0005 36 1 5.1499 2.5714 0.0095 37 1 5.2457 -2.1389 2.7392 38 1 4.7898 -2.2548 0.3120 39 1 5.7481 -4.3205 -0.6247 40 1 7.6864 -4.2024 -2.1387 41 1 8.6628 -2.0180 -2.7205 42 1 7.7003 0.0482 -1.7892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233803577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:37 Heat of formation + Delta-G solvation = 1.593994 kcal Electronic energy + Delta-G solvation = -27351.173372 eV Core-core repulsion = 23457.575016 eV Total energy + Delta-G solvation = -3893.598356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.94702 -38.46354 -37.47724 -37.09275 -36.03614 -33.34637 -32.65360 -30.72107 -29.96164 -29.72671 -28.84842 -27.01792 -26.78205 -23.70315 -22.92544 -21.85568 -21.43837 -20.30486 -19.91848 -17.88199 -17.72646 -16.87734 -16.16613 -16.06757 -15.50886 -15.34143 -15.08108 -14.98336 -14.30067 -14.14425 -14.10095 -13.74598 -13.59446 -13.43800 -13.35060 -12.59066 -12.40789 -12.27386 -11.87191 -11.76608 -11.60145 -11.50695 -11.04892 -11.00391 -10.97413 -10.84649 -10.60334 -10.47737 -10.12688 -9.88958 -9.79555 -9.41363 -9.17110 -8.85127 -8.19724 -7.85799 -7.56277 -6.96013 -6.09796 -4.46678 1.19038 1.86389 2.38900 2.56015 2.75293 3.08289 3.20765 3.25497 3.28126 3.73700 4.22416 4.26355 4.32553 4.84438 4.94794 5.08837 5.17653 5.31455 5.39470 5.53072 5.59101 5.70183 5.76490 5.83098 5.84107 5.90195 6.02905 6.18898 6.26430 6.39359 6.40715 6.56283 6.70155 6.79392 6.86488 6.94534 7.02004 7.16904 7.25758 7.43454 7.52576 7.67122 7.74258 7.77778 7.85257 7.97513 8.21767 8.43445 8.78139 9.30395 10.73017 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.003907 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.029404 B = 7165.464009 C = 7704.906558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.297 6.297 3 C 0.069 3.931 4 C -0.142 4.142 5 C -0.107 4.107 6 C 0.169 3.831 7 N -0.348 5.348 8 O -0.425 6.425 9 C -0.063 4.063 10 C -0.188 4.188 11 C 0.181 3.819 12 O -0.276 6.276 13 C 0.236 3.764 14 H 0.036 0.964 15 C -0.548 4.548 16 H 0.068 0.932 17 C 0.086 3.914 18 N -0.841 5.841 19 Si 0.895 3.105 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.044 4.044 24 C -0.044 4.044 25 C -0.152 4.152 26 C -0.143 4.143 27 C -0.149 4.149 28 C -0.125 4.125 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.401 0.599 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.267 0.733 38 H 0.166 0.834 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 4.472 -4.839 9.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.211 6.211 3 C 0.024 3.976 4 C -0.163 4.163 5 C -0.109 4.109 6 C -0.040 4.040 7 N -0.092 5.092 8 O -0.331 6.331 9 C -0.083 4.083 10 C -0.207 4.207 11 C 0.130 3.870 12 O -0.187 6.187 13 C 0.183 3.817 14 H 0.054 0.946 15 C -0.584 4.584 16 H 0.086 0.914 17 C -0.122 4.122 18 N -0.475 5.475 19 Si 0.722 3.278 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.200 1.200 23 C -0.045 4.045 24 C -0.063 4.063 25 C -0.170 4.170 26 C -0.161 4.161 27 C -0.167 4.167 28 C -0.143 4.143 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.249 0.751 35 H 0.145 0.855 36 H 0.163 0.837 37 H 0.077 0.923 38 H 0.183 0.817 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.334 4.009 -4.725 8.861 hybrid contribution -0.016 0.687 1.147 1.337 sum -6.350 4.697 -3.578 8.671 Atomic orbital electron populations 1.22963 0.79929 1.03387 1.00484 1.86277 1.19742 1.25675 1.89403 1.18118 0.89642 0.84636 1.05220 1.20824 0.99116 0.90527 1.05800 1.17702 0.92613 0.89138 1.11474 1.24189 0.98097 0.90187 0.91503 1.76525 1.22905 0.93126 1.16627 1.88377 1.34615 1.14259 1.95837 1.21015 0.92245 0.98256 0.96822 1.21211 1.01443 0.90593 1.07429 1.18634 0.88167 0.87883 0.92317 1.86373 1.22151 1.26648 1.83504 1.19063 0.75840 0.91282 0.95517 0.94577 1.21323 1.36822 1.05711 0.94528 0.91374 1.25011 0.93762 0.94222 0.99171 1.69799 1.37543 1.07985 1.32215 0.86593 0.79704 0.78197 0.83282 1.19846 1.20911 1.19967 1.19741 0.95362 0.95797 0.93573 1.21898 1.00973 0.90193 0.93236 1.21156 0.97935 0.98511 0.99445 1.20857 0.98033 0.96636 1.00560 1.20703 1.00717 0.92881 1.02435 1.20746 0.97430 0.97501 0.98635 0.93262 0.93342 0.88736 0.85255 0.86875 0.75125 0.85533 0.83651 0.92266 0.81729 0.87866 0.88133 0.87817 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.34 16 2 O -0.30 -5.46 10.27 -34.42 -0.35 -5.82 16 3 C 0.07 1.29 6.69 -39.18 -0.26 1.03 16 4 C -0.14 -2.18 8.77 -39.05 -0.34 -2.52 16 5 C -0.11 -1.68 5.87 -105.03 -0.62 -2.29 16 6 C 0.17 2.39 10.90 -14.79 -0.16 2.23 16 7 N -0.35 -5.14 11.22 32.12 0.36 -4.78 16 8 O -0.42 -5.39 14.95 -11.47 -0.17 -5.56 16 9 C -0.06 -1.06 9.57 -39.17 -0.37 -1.43 16 10 C -0.19 -3.57 8.67 -39.52 -0.34 -3.92 16 11 C 0.18 3.80 6.61 -38.98 -0.26 3.55 16 12 O -0.28 -6.56 8.12 -34.09 -0.28 -6.84 16 13 C 0.24 5.51 2.11 -29.03 -0.06 5.45 16 14 H 0.04 0.79 6.26 -51.93 -0.32 0.46 16 15 C -0.55 -13.67 7.92 -34.44 -0.27 -13.94 16 16 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.09 2.18 5.24 -17.82 -0.09 2.09 16 18 N -0.84 -21.66 8.50 55.43 0.47 -21.19 16 19 Si 0.90 20.16 29.54 -169.99 -5.02 15.13 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C -0.04 -1.02 4.80 -104.62 -0.50 -1.52 16 24 C -0.04 -1.02 7.46 -39.59 -0.30 -1.32 16 25 C -0.15 -3.10 10.05 -39.58 -0.40 -3.50 16 26 C -0.14 -2.67 10.05 -39.58 -0.40 -3.06 16 27 C -0.15 -2.79 10.05 -39.58 -0.40 -3.19 16 28 C -0.12 -2.57 9.68 -39.59 -0.38 -2.95 16 29 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 30 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.13 1.55 6.29 -52.49 -0.33 1.22 16 33 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.40 3.12 9.28 45.56 0.42 3.54 16 35 H 0.13 1.97 7.54 -52.49 -0.40 1.57 16 36 H 0.15 2.79 5.65 -52.49 -0.30 2.49 16 37 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 38 H 0.17 4.15 5.50 -52.49 -0.29 3.86 16 39 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 40 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.11 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -29.49 358.56 -7.85 -37.33 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -4.09 Total: 10.29 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -4.17 Total: -23.97 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.83 Total: -25.98 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.80 Total: -18.21 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.49 -7.85 -37.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233803577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.929 kcal (2) G-P(sol) polarization free energy of solvation -29.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds