Wall clock time and date at job start Tue Mar 31 2020 14:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36000 * 117.00505 * 2 1 4 4 C 1.38218 * 119.99622 * 0.02562 * 3 2 1 5 5 C 1.39690 * 119.84891 * 179.97438 * 4 3 2 6 6 C 1.47528 * 120.07512 * 179.97438 * 5 4 3 7 7 N 1.29390 * 119.99983 * 180.02562 * 6 5 4 8 8 O 1.41597 * 120.00355 * 179.97438 * 7 6 5 9 9 C 1.39680 * 119.84678 * 0.02562 * 5 4 3 10 10 C 1.37879 * 119.99689 * 359.71586 * 9 5 4 11 11 C 1.38754 * 120.15138 * 0.53860 * 10 9 5 12 12 O 1.35896 * 119.92382 * 179.76021 * 11 10 9 13 13 C 1.42901 * 116.99684 * 354.54011 * 12 11 10 14 14 H 1.09001 * 109.46891 * 324.29502 * 13 12 11 15 15 C 1.50700 * 109.47528 * 84.29770 * 13 12 11 16 16 H 1.08001 * 119.99901 * 239.99904 * 15 13 12 17 17 C 1.37876 * 120.00056 * 59.99518 * 15 13 12 18 18 N 1.31508 * 119.99923 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00016 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47069 * 60.00111 * 19 17 15 21 21 H 1.48498 * 109.47164 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46889 * 300.00074 * 19 17 15 23 23 C 1.50706 * 109.46824 * 204.29933 * 13 12 11 24 24 C 1.38231 * 119.99968 * 324.71619 * 23 13 12 25 25 C 1.38231 * 120.00156 * 179.80688 * 24 23 13 26 26 C 1.38236 * 119.99690 * 0.41318 * 25 24 23 27 27 C 1.38234 * 120.00066 * 359.84416 * 26 25 24 28 28 C 1.38232 * 120.00035 * 359.96145 * 27 26 25 29 29 H 1.08996 * 109.47232 * 300.00400 * 1 2 3 30 30 H 1.09006 * 109.46679 * 59.99985 * 1 2 3 31 31 H 1.08996 * 109.47347 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.07285 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.99706 * 359.97438 * 6 5 4 34 34 H 0.96696 * 114.00645 * 179.97438 * 8 7 6 35 35 H 1.07994 * 119.99715 * 179.97438 * 9 5 4 36 36 H 1.07999 * 119.92152 * 180.27824 * 10 9 5 37 37 H 0.97002 * 120.00144 * 179.97438 * 18 17 15 38 38 H 1.08000 * 119.99949 * 0.02562 * 24 23 13 39 39 H 1.08001 * 120.00148 * 180.23402 * 25 24 23 40 40 H 1.08004 * 119.99714 * 179.83192 * 26 25 24 41 41 H 1.08001 * 119.99818 * 179.97438 * 27 26 25 42 42 H 1.08003 * 119.99973 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2937 2.3709 0.0005 5 6 1.9312 3.6139 0.0011 6 6 1.1326 4.8543 0.0011 7 7 1.7246 6.0049 0.0011 8 8 0.9582 7.1955 0.0005 9 6 3.3265 3.6795 0.0005 10 6 4.0712 2.5192 0.0054 11 6 3.4379 1.2846 -0.0005 12 8 4.1764 0.1438 -0.0006 13 6 5.5934 0.2885 -0.1157 14 1 5.8208 1.1251 -0.7764 15 6 6.1842 0.5490 1.2460 16 1 6.7323 1.4609 1.4314 17 6 6.0247 -0.3768 2.2552 18 7 5.3576 -1.4874 2.0294 19 14 6.7563 -0.0537 3.9433 20 1 6.1751 1.1923 4.5044 21 1 6.4472 -1.1937 4.8433 22 1 8.2288 0.0970 3.8240 23 6 6.1828 -0.9761 -0.6854 24 6 5.6380 -2.2027 -0.3545 25 6 6.1761 -3.3624 -0.8802 26 6 7.2643 -3.2961 -1.7301 27 6 7.8124 -2.0698 -2.0568 28 6 7.2718 -0.9098 -1.5343 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2152 2.3158 0.0014 33 1 0.0539 4.8020 0.0002 34 1 1.4881 8.0044 0.0010 35 1 3.8218 4.6392 0.0005 36 1 5.1499 2.5714 0.0095 37 1 5.2457 -2.1389 2.7392 38 1 4.7898 -2.2548 0.3120 39 1 5.7481 -4.3205 -0.6247 40 1 7.6864 -4.2024 -2.1387 41 1 8.6628 -2.0180 -2.7205 42 1 7.7003 0.0482 -1.7892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233803577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:36 Heat of formation + Delta-G solvation = -15.337563 kcal Electronic energy + Delta-G solvation = -27351.907580 eV Core-core repulsion = 23457.575016 eV Total energy + Delta-G solvation = -3894.332563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34040 -40.00854 -38.84688 -38.38854 -37.26678 -35.01576 -33.96087 -32.36627 -31.35448 -31.25045 -30.15125 -28.75777 -27.87954 -25.32160 -24.34306 -23.24876 -23.00022 -21.73887 -21.31452 -19.44009 -18.82471 -18.36528 -17.67575 -17.50993 -16.93278 -16.81872 -16.52738 -16.18880 -15.73644 -15.63009 -15.41963 -15.31570 -14.94187 -14.77511 -14.71369 -14.10887 -13.83163 -13.77332 -13.39718 -13.24726 -13.05716 -13.00414 -12.82458 -12.50797 -12.31527 -12.12580 -12.06927 -12.03181 -11.73915 -11.18451 -11.13502 -10.94074 -10.75588 -10.64550 -9.52145 -9.44628 -9.21114 -8.41595 -7.94512 -6.39048 -0.07068 0.50127 0.79510 0.97875 1.39274 1.40359 1.46233 1.52006 2.07735 2.36846 2.56371 2.73376 2.95573 3.22623 3.33998 3.75745 3.97636 4.21063 4.25742 4.31105 4.37073 4.39238 4.51352 4.51871 4.56611 4.60909 4.65105 4.78106 4.80703 4.89079 5.02469 5.18867 5.19904 5.37507 5.43276 5.53660 5.60412 5.65276 5.82911 5.86755 5.88678 5.94267 6.11725 6.31156 6.46114 6.53222 6.67828 6.83881 7.12404 7.40582 8.83402 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.003907 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.029404 B = 7165.464009 C = 7704.906558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.060 3.940 4 C -0.127 4.127 5 C -0.093 4.093 6 C 0.165 3.835 7 N -0.364 5.364 8 O -0.421 6.421 9 C -0.071 4.071 10 C -0.192 4.192 11 C 0.132 3.868 12 O -0.302 6.302 13 C 0.239 3.761 14 H 0.036 0.964 15 C -0.561 4.561 16 H 0.061 0.939 17 C 0.046 3.954 18 N -0.856 5.856 19 Si 0.944 3.056 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.071 4.071 24 C -0.067 4.067 25 C -0.161 4.161 26 C -0.138 4.138 27 C -0.144 4.144 28 C -0.138 4.138 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.171 0.829 33 H 0.145 0.855 34 H 0.421 0.579 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.262 0.738 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.552 5.275 -5.609 10.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.015 3.985 4 C -0.147 4.147 5 C -0.095 4.095 6 C -0.043 4.043 7 N -0.105 5.105 8 O -0.333 6.333 9 C -0.092 4.092 10 C -0.211 4.211 11 C 0.082 3.918 12 O -0.214 6.214 13 C 0.186 3.814 14 H 0.053 0.947 15 C -0.597 4.597 16 H 0.079 0.921 17 C -0.159 4.159 18 N -0.491 5.491 19 Si 0.770 3.230 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.072 4.072 24 C -0.086 4.086 25 C -0.179 4.179 26 C -0.155 4.155 27 C -0.162 4.162 28 C -0.156 4.156 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.127 0.873 32 H 0.188 0.812 33 H 0.162 0.838 34 H 0.272 0.728 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.072 0.928 38 H 0.154 0.846 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.247 4.829 -5.502 10.301 hybrid contribution 0.134 0.601 1.298 1.436 sum -7.113 5.429 -4.204 9.887 Atomic orbital electron populations 1.23329 0.76936 1.05159 1.02316 1.86229 1.23007 1.26045 1.89499 1.18314 0.89103 0.85899 1.05226 1.21157 1.00862 0.89041 1.03671 1.17935 0.92195 0.90346 1.09031 1.24171 0.99245 0.89191 0.91727 1.76400 1.24240 0.94117 1.15773 1.88352 1.35007 1.14404 1.95546 1.21129 0.93140 0.97716 0.97170 1.21144 1.01024 0.91050 1.07918 1.19106 0.89472 0.87729 0.95460 1.86295 1.21935 1.28119 1.85025 1.18954 0.76097 0.91698 0.94689 0.94650 1.21510 1.36922 1.05425 0.95884 0.92066 1.25598 0.94387 0.94330 1.01600 1.70014 1.38378 1.08335 1.32365 0.85844 0.79050 0.77754 0.80379 1.20076 1.20734 1.19718 1.19924 0.96601 0.95620 0.95046 1.21689 1.01055 0.91554 0.94289 1.21389 0.98625 0.98243 0.99624 1.21271 0.96840 0.98226 0.99212 1.21148 1.01117 0.92061 1.01844 1.21024 0.96941 0.99185 0.98465 0.91655 0.90996 0.87283 0.81181 0.83800 0.72803 0.84524 0.85017 0.92819 0.84629 0.86214 0.84317 0.84075 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.33 -12.45 10.27 -79.52 -0.82 -13.27 16 3 C 0.06 2.26 6.69 22.53 0.15 2.42 16 4 C -0.13 -3.67 8.77 22.62 0.20 -3.47 16 5 C -0.09 -2.76 5.87 -20.13 -0.12 -2.88 16 6 C 0.17 4.16 10.90 87.50 0.95 5.12 16 7 N -0.36 -9.76 11.22 -52.31 -0.59 -10.35 16 8 O -0.42 -9.35 14.95 -38.78 -0.58 -9.93 16 9 C -0.07 -2.40 9.57 22.53 0.22 -2.19 16 10 C -0.19 -7.70 8.67 22.31 0.19 -7.51 16 11 C 0.13 5.84 6.61 22.66 0.15 5.99 16 12 O -0.30 -15.35 8.12 -78.35 -0.64 -15.99 16 13 C 0.24 11.87 2.11 29.10 0.06 11.93 16 14 H 0.04 1.67 6.26 -2.39 -0.01 1.66 16 15 C -0.56 -29.50 7.92 25.60 0.20 -29.30 16 16 H 0.06 3.17 7.81 -2.91 -0.02 3.14 16 17 C 0.05 2.44 5.24 84.66 0.44 2.88 16 18 N -0.86 -46.37 8.50 21.45 0.18 -46.18 16 19 Si 0.94 42.64 29.54 68.60 2.03 44.67 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 C -0.07 -3.42 4.80 -19.87 -0.10 -3.52 16 24 C -0.07 -3.22 7.46 22.27 0.17 -3.06 16 25 C -0.16 -6.54 10.05 22.27 0.22 -6.31 16 26 C -0.14 -4.85 10.05 22.27 0.22 -4.62 16 27 C -0.14 -5.10 10.05 22.27 0.22 -4.87 16 28 C -0.14 -5.70 9.68 22.27 0.22 -5.49 16 29 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 30 H 0.07 1.29 7.66 -2.38 -0.02 1.27 16 31 H 0.11 2.12 8.14 -2.39 -0.02 2.11 16 32 H 0.17 3.41 6.29 -2.91 -0.02 3.39 16 33 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.42 5.29 9.28 -74.06 -0.69 4.61 16 35 H 0.14 4.23 7.54 -2.91 -0.02 4.21 16 36 H 0.13 5.47 5.65 -2.91 -0.02 5.46 16 37 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 38 H 0.14 7.33 5.50 -2.91 -0.02 7.31 16 39 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 41 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 42 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -67.30 358.56 4.49 -62.81 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.38 Total: 31.63 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 4.52 Total: -43.39 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.40 Total: -56.53 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -2.03 Total: -39.19 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -67.30 4.49 -62.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233803577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.472 kcal (2) G-P(sol) polarization free energy of solvation -67.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds