Wall clock time and date at job start Tue Mar 31 2020 14:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35535 * 116.99534 * 2 1 4 4 C 1.39128 * 120.48713 * 359.95407 * 3 2 1 5 5 C 1.38296 * 118.64664 * 180.02562 * 4 3 2 6 6 C 1.40118 * 119.57316 * 0.02562 * 5 4 3 7 7 C 1.48182 * 119.52620 * 179.97438 * 6 5 4 8 8 C 1.39484 * 120.02525 * 13.67095 * 7 6 5 9 9 C 1.38016 * 120.08415 * 179.71366 * 8 7 6 10 10 C 1.38654 * 119.88376 * 0.58526 * 9 8 7 11 11 C 1.38928 * 120.27897 * 359.70188 * 10 9 8 12 12 C 1.38185 * 120.19382 * 359.97438 * 11 10 9 13 13 O 1.36493 * 119.60503 * 179.97438 * 11 10 9 14 14 C 1.42891 * 115.93718 * 68.33405 * 13 11 10 15 15 C 1.52063 * 110.77291 * 275.59399 * 14 13 11 16 16 C 1.52071 * 112.36608 * 64.79081 * 15 14 13 17 17 O 1.36443 * 120.17249 * 179.70774 * 10 9 8 18 18 N 1.32209 * 120.95676 * 0.02562 * 6 5 4 19 19 C 1.33597 * 121.45498 * 359.97438 * 18 6 5 20 20 C 1.40980 * 119.83286 * 179.72224 * 19 18 6 21 21 H 1.08003 * 119.99625 * 172.10126 * 20 19 18 22 22 C 1.40006 * 119.99972 * 352.10657 * 20 19 18 23 23 N 1.30785 * 119.99799 * 168.74189 * 22 20 19 24 24 Si 1.86793 * 120.00337 * 348.73102 * 22 20 19 25 25 H 1.48504 * 109.46913 * 85.12227 * 24 22 20 26 26 H 1.48494 * 109.47767 * 205.12456 * 24 22 20 27 27 H 1.48503 * 109.47257 * 325.12703 * 24 22 20 28 28 H 1.09001 * 109.46995 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47311 * 300.00075 * 1 2 3 30 30 H 1.09001 * 109.46864 * 60.00055 * 1 2 3 31 31 H 1.08001 * 120.67126 * 0.02936 * 4 3 2 32 32 H 1.08004 * 120.20993 * 179.97438 * 5 4 3 33 33 H 1.08004 * 119.95755 * 359.97438 * 8 7 6 34 34 H 1.08002 * 120.05230 * 180.25055 * 9 8 7 35 35 H 1.07995 * 120.19027 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.21612 * 35.92554 * 14 13 11 37 37 H 1.09005 * 109.21927 * 155.25947 * 14 13 11 38 38 H 1.08999 * 108.90584 * 185.53907 * 15 14 13 39 39 H 1.09001 * 108.90097 * 304.14685 * 15 14 13 40 40 H 1.08997 * 109.21240 * 55.49710 * 16 15 14 41 41 H 1.08996 * 109.21087 * 174.82174 * 16 15 14 42 42 H 0.96999 * 120.00245 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2077 0.0000 4 6 1.2963 2.3808 -0.0010 5 6 1.9633 3.5923 -0.0015 6 6 3.3644 3.6103 -0.0016 7 6 4.0780 4.9090 -0.0027 8 6 3.3858 6.0861 0.2818 9 6 4.0504 7.2956 0.2869 10 6 5.4055 7.3404 -0.0033 11 6 6.0989 6.1720 -0.2932 12 6 5.4421 4.9561 -0.2938 13 8 7.4325 6.2321 -0.5774 14 6 8.2874 6.5931 0.5092 15 6 8.3644 8.1047 0.6556 16 6 7.0263 8.7179 1.0381 17 8 6.0672 8.5337 -0.0057 18 7 4.0590 2.4854 -0.0017 19 6 3.4556 1.2935 -0.0012 20 6 4.2299 0.1154 -0.0072 21 1 3.7529 -0.8450 0.1216 22 6 5.6172 0.1904 -0.1802 23 7 6.3606 -0.8646 0.0317 24 14 6.4065 1.7971 -0.7139 25 1 6.6549 2.6466 0.4786 26 1 7.6943 1.5134 -1.3966 27 1 5.4974 2.5089 -1.6479 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2169 2.3460 -0.0012 32 1 1.4078 4.5185 -0.0026 33 1 2.3291 6.0504 0.5025 34 1 3.5147 8.2062 0.5112 35 1 5.9812 4.0478 -0.5188 36 1 7.8968 6.1627 1.4313 37 1 9.2871 6.1991 0.3254 38 1 9.0972 8.3481 1.4249 39 1 8.6907 8.5351 -0.2912 40 1 6.6614 8.2431 1.9489 41 1 7.1592 9.7845 1.2189 42 1 7.3218 -0.8126 -0.0878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242205748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:57 Heat of formation + Delta-G solvation = -52.953047 kcal Electronic energy + Delta-G solvation = -27712.687815 eV Core-core repulsion = 23816.724122 eV Total energy + Delta-G solvation = -3895.963693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.71855 -39.38472 -37.82842 -37.36097 -36.61036 -33.86686 -32.93633 -31.32170 -31.13532 -29.84071 -28.45384 -26.87778 -26.48655 -25.54317 -23.05084 -22.51164 -21.75200 -21.33172 -20.38015 -18.41912 -17.79724 -17.21822 -16.93110 -16.68445 -15.98070 -15.39301 -15.37612 -15.01873 -14.96143 -14.72955 -14.16095 -14.06483 -13.82236 -13.56933 -13.25315 -13.18582 -13.02349 -12.60276 -12.43569 -12.02485 -11.79180 -11.62172 -11.43703 -11.16421 -10.99279 -10.88400 -10.73652 -10.69398 -10.42732 -10.36672 -9.96510 -9.71047 -9.38399 -8.65268 -8.64682 -8.42641 -7.86912 -7.20780 -6.97032 -4.64770 1.03102 1.44584 2.40923 2.50938 3.37012 3.40760 3.50582 3.55015 3.59498 4.04330 4.14016 4.33103 4.52009 4.53268 4.62736 4.94697 4.99563 5.06156 5.17972 5.24816 5.36478 5.38843 5.46595 5.47335 5.55035 5.63113 5.64706 5.68671 5.72440 5.83907 5.86984 5.93521 6.03840 6.20511 6.32546 6.49342 6.53321 6.66185 6.82628 6.97037 7.10389 7.18701 7.22243 7.53131 7.70236 7.96214 8.14992 8.49194 8.60602 9.37109 9.93883 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.004403 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.171793 B = 6357.287742 C = 8053.923592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C -0.002 4.002 4 C -0.142 4.142 5 C -0.259 4.259 6 C 0.169 3.831 7 C -0.007 4.007 8 C -0.100 4.100 9 C -0.119 4.119 10 C 0.054 3.946 11 C 0.061 3.939 12 C -0.102 4.102 13 O -0.319 6.319 14 C 0.057 3.943 15 C -0.185 4.185 16 C 0.059 3.941 17 O -0.320 6.320 18 N -0.546 5.546 19 C 0.242 3.758 20 C -0.387 4.387 21 H 0.105 0.895 22 C 0.079 3.921 23 N -0.790 5.790 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.328 1.328 27 H -0.257 1.257 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 13.988 2.908 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.216 6.216 3 C -0.051 4.051 4 C -0.166 4.166 5 C -0.283 4.283 6 C 0.032 3.968 7 C -0.008 4.008 8 C -0.119 4.119 9 C -0.138 4.138 10 C 0.010 3.990 11 C 0.017 3.983 12 C -0.120 4.120 13 O -0.236 6.236 14 C -0.018 4.018 15 C -0.223 4.223 16 C -0.016 4.016 17 O -0.237 6.237 18 N -0.267 5.267 19 C 0.117 3.883 20 C -0.418 4.418 21 H 0.123 0.877 22 C -0.145 4.145 23 N -0.413 5.413 24 Si 0.829 3.171 25 H -0.199 1.199 26 H -0.261 1.261 27 H -0.184 1.184 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.102 13.676 2.654 13.932 hybrid contribution -0.734 0.628 0.162 0.979 sum -0.632 14.304 2.816 14.593 Atomic orbital electron populations 1.22834 0.81021 1.02420 1.00147 1.85987 1.18826 1.27254 1.89498 1.19977 0.92967 0.83642 1.08466 1.20939 0.98268 0.92278 1.05100 1.20824 0.93087 0.96803 1.17588 1.19108 0.89997 0.90039 0.97645 1.18673 0.92055 0.92293 0.97815 1.21165 1.00259 0.90555 0.99878 1.20894 0.92928 0.98402 1.01529 1.19173 0.91941 0.84601 1.03250 1.19059 0.84368 0.92270 1.02580 1.21783 0.94773 0.97141 0.98334 1.86369 1.13558 1.88831 1.34812 1.22624 0.94927 0.94286 0.90000 1.22462 0.98728 0.97085 1.03978 1.22609 0.88014 1.01545 0.89429 1.86350 1.54058 1.32851 1.50410 1.66793 1.36693 0.97319 1.25890 1.17981 0.86776 0.90888 0.92700 1.19467 0.91378 0.93542 1.37459 0.87704 1.26466 0.97516 0.99881 0.90596 1.69637 1.07890 1.31693 1.32051 0.84901 0.73603 0.78517 0.80040 1.19880 1.26077 1.18360 0.89447 0.93879 0.93851 0.86942 0.87229 0.84541 0.84866 0.83847 0.92373 0.87954 0.89423 0.89946 0.92509 0.88196 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.83 101.05 0.99 1.48 16 2 O -0.30 -6.58 9.62 -18.30 -0.18 -6.75 16 3 C 0.00 -0.04 6.74 -38.05 -0.26 -0.30 16 4 C -0.14 -2.89 9.11 -39.23 -0.36 -3.25 16 5 C -0.26 -5.23 9.41 -38.85 -0.37 -5.59 16 6 C 0.17 3.82 6.69 -82.91 -0.55 3.26 16 7 C -0.01 -0.15 5.86 -104.85 -0.61 -0.76 16 8 C -0.10 -1.60 9.37 -39.20 -0.37 -1.97 16 9 C -0.12 -1.75 9.99 -39.51 -0.39 -2.15 16 10 C 0.05 0.89 5.74 -39.17 -0.22 0.67 16 11 C 0.06 1.14 5.72 -39.35 -0.23 0.91 16 12 C -0.10 -2.13 9.50 -39.11 -0.37 -2.50 16 13 O -0.32 -5.66 10.16 -36.77 -0.37 -6.04 16 14 C 0.06 0.74 6.51 36.68 0.24 0.97 16 15 C -0.18 -1.88 5.93 -27.68 -0.16 -2.05 16 16 C 0.06 0.64 6.51 36.68 0.24 0.88 16 17 O -0.32 -4.74 10.16 -36.60 -0.37 -5.11 16 18 N -0.55 -13.88 4.35 -7.57 -0.03 -13.92 16 19 C 0.24 6.32 6.34 -84.86 -0.54 5.78 16 20 C -0.39 -10.66 9.47 -37.88 -0.36 -11.02 16 21 H 0.11 2.99 7.55 -52.48 -0.40 2.59 16 22 C 0.08 2.12 5.52 -17.33 -0.10 2.03 16 23 N -0.79 -21.13 13.93 55.55 0.77 -20.35 16 24 Si 0.99 24.58 22.23 -169.99 -3.78 20.80 16 25 H -0.27 -6.66 6.58 56.52 0.37 -6.29 16 26 H -0.33 -7.88 7.11 56.52 0.40 -7.48 16 27 H -0.26 -6.57 6.23 56.52 0.35 -6.22 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 30 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 31 H 0.11 1.89 6.43 -52.49 -0.34 1.56 16 32 H 0.11 1.84 6.37 -52.48 -0.33 1.50 16 33 H 0.14 1.85 6.36 -52.48 -0.33 1.52 16 34 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.14 3.31 2.36 -52.49 -0.12 3.19 16 36 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.60 7.93 -51.93 -0.41 0.18 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.29 7.06 8.30 -40.82 -0.34 6.72 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -31.14 335.97 -7.21 -38.35 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.90 Total: 1.55 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -3.42 Total: -13.59 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.74 Total: -34.27 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.92 Total: -17.90 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -3.78 Total: 20.80 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.14 -7.21 -38.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242205748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.607 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds