Wall clock time and date at job start Tue Mar 31 2020 15:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99696 * 2 1 4 4 O 1.20827 * 119.99941 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00090 * 179.97438 * 3 2 1 6 6 H 1.08993 * 109.47001 * 319.99739 * 5 3 2 7 7 N 1.46905 * 109.47107 * 199.99896 * 5 3 2 8 8 C 1.50698 * 109.46771 * 80.00096 * 5 3 2 9 9 C 1.38340 * 119.86914 * 259.99709 * 8 5 3 10 10 C 1.38008 * 120.12309 * 180.02562 * 9 8 5 11 11 C 1.39390 * 119.87318 * 359.97438 * 10 9 8 12 12 C 1.48282 * 120.12217 * 179.97438 * 11 10 9 13 13 C 1.39292 * 120.16191 * 309.72139 * 12 11 10 14 14 C 1.38010 * 119.94493 * 180.23465 * 13 12 11 15 15 C 1.38451 * 120.27306 * 0.06722 * 14 13 12 16 16 C 1.38114 * 120.32126 * 359.95333 * 15 14 13 17 17 C 1.38752 * 120.05248 * 0.02562 * 16 15 14 18 18 O 1.35663 * 120.13506 * 179.97438 * 17 16 15 19 19 C 1.34808 * 117.00265 * 354.40468 * 18 17 16 20 20 H 1.08003 * 119.99936 * 5.05719 * 19 18 17 21 21 C 1.38650 * 120.00224 * 185.06401 * 19 18 17 22 22 N 1.31559 * 119.99914 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99827 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47385 * 60.00002 * 23 21 19 25 25 H 1.48508 * 109.46896 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47188 * 299.99446 * 23 21 19 27 27 C 1.39392 * 119.74922 * 0.25693 * 11 10 9 28 28 C 1.38007 * 119.86784 * 359.46586 * 27 11 10 29 29 H 1.08994 * 109.47427 * 299.99607 * 1 2 3 30 30 H 1.08998 * 109.47486 * 60.00701 * 1 2 3 31 31 H 1.09001 * 109.46943 * 180.02562 * 1 2 3 32 32 H 1.00894 * 110.99840 * 176.05038 * 7 5 3 33 33 H 1.00906 * 110.99684 * 299.99942 * 7 5 3 34 34 H 1.07999 * 119.93796 * 359.97438 * 9 8 5 35 35 H 1.08000 * 120.05636 * 180.02562 * 10 9 8 36 36 H 1.07994 * 120.02468 * 0.25468 * 13 12 11 37 37 H 1.08001 * 119.86223 * 180.02562 * 14 13 12 38 38 H 1.07992 * 119.83661 * 179.97438 * 15 14 13 39 39 H 1.07998 * 119.96961 * 180.02562 * 16 15 14 40 40 H 0.96993 * 119.99768 * 180.02562 * 22 21 19 41 41 H 1.07998 * 120.06449 * 179.72333 * 27 11 10 42 42 H 1.08003 * 119.93090 * 180.27488 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9701 0.5081 0.6615 7 7 3.9869 2.6005 0.4742 8 6 4.0813 1.0547 -1.3984 9 6 4.5732 -0.1855 -1.7641 10 6 5.0467 -0.3930 -3.0438 11 6 5.0281 0.6499 -3.9685 12 6 5.5359 0.4333 -5.3447 13 6 6.7878 -0.1433 -5.5460 14 6 7.2582 -0.3384 -6.8288 15 6 6.4911 0.0381 -7.9182 16 6 5.2485 0.6111 -7.7314 17 6 4.7623 0.8131 -6.4476 18 8 3.5421 1.3763 -6.2622 19 6 2.9011 1.8235 -7.3606 20 1 3.3236 1.6522 -8.3397 21 6 1.6995 2.5035 -7.2334 22 7 1.1847 2.7118 -6.0408 23 14 0.8118 3.1238 -8.7554 24 1 0.4828 1.9763 -9.6388 25 1 -0.4407 3.8121 -8.3518 26 1 1.6870 4.0756 -9.4855 27 6 4.5357 1.8987 -3.5929 28 6 4.0596 2.0929 -2.3122 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.9917 2.6570 0.5450 33 1 3.6249 3.3293 -0.1225 34 1 4.5875 -0.9926 -1.0467 35 1 5.4300 -1.3617 -3.3283 36 1 7.3897 -0.4377 -4.6991 37 1 8.2288 -0.7859 -6.9834 38 1 6.8663 -0.1175 -8.9189 39 1 4.6548 0.9022 -8.5853 40 1 0.3439 3.1872 -5.9519 41 1 4.5231 2.7115 -4.3039 42 1 3.6738 3.0589 -2.0214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:58 Heat of formation + Delta-G solvation = -57.682835 kcal Electronic energy + Delta-G solvation = -27211.846251 eV Core-core repulsion = 23315.677459 eV Total energy + Delta-G solvation = -3896.168792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.54009 -39.50291 -38.45075 -36.59570 -36.34455 -34.80811 -32.39647 -31.54510 -30.59274 -29.17973 -28.67592 -27.82680 -25.57614 -25.37822 -22.68823 -22.38104 -21.32066 -20.78822 -20.01520 -18.04293 -17.84687 -17.30596 -16.75489 -16.63255 -15.86177 -15.23329 -15.06975 -14.76671 -14.67947 -14.37415 -14.09387 -13.76930 -13.65308 -13.48846 -13.22160 -13.02348 -12.86084 -12.70653 -12.38678 -12.22412 -11.83811 -11.75709 -11.53781 -11.40929 -10.95509 -10.87789 -10.69532 -10.63759 -10.61125 -10.48351 -10.40771 -9.43643 -9.07714 -8.92023 -8.64526 -8.48832 -7.87489 -7.20134 -6.51491 -4.10619 1.35826 1.86552 2.15453 2.29894 2.41329 2.76077 3.08712 3.09566 3.12674 3.89853 4.11117 4.50707 4.60860 4.79159 4.91014 4.97527 5.02034 5.14302 5.16238 5.25877 5.27092 5.33563 5.45880 5.58261 5.58900 5.73778 5.84942 5.97781 6.02274 6.18678 6.29937 6.45177 6.47244 6.56635 6.62145 6.73604 6.88326 6.92372 6.94856 7.08137 7.15656 7.27916 7.28244 7.33510 7.44144 7.71576 7.87025 7.91240 8.92734 9.60264 10.64556 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009571 B = 0.004500 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.680657 B = 6220.571081 C = 8356.675002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.473 3.527 4 O -0.495 6.495 5 C 0.153 3.847 6 H 0.118 0.882 7 N -0.826 5.826 8 C -0.151 4.151 9 C -0.101 4.101 10 C -0.119 4.119 11 C 0.004 3.996 12 C -0.142 4.142 13 C -0.058 4.058 14 C -0.216 4.216 15 C -0.068 4.068 16 C -0.234 4.234 17 C 0.165 3.835 18 O -0.163 6.163 19 C -0.397 4.397 20 H 0.091 0.909 21 C 0.044 3.956 22 N -0.852 5.852 23 Si 0.939 3.061 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.075 4.075 28 C -0.103 4.103 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.356 0.644 33 H 0.355 0.645 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.874 -5.023 8.554 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.315 3.685 4 O -0.381 6.381 5 C 0.040 3.960 6 H 0.136 0.864 7 N -0.359 5.359 8 C -0.153 4.153 9 C -0.119 4.119 10 C -0.137 4.137 11 C 0.004 3.996 12 C -0.143 4.143 13 C -0.076 4.076 14 C -0.235 4.235 15 C -0.087 4.087 16 C -0.253 4.253 17 C 0.110 3.890 18 O -0.065 6.065 19 C -0.473 4.473 20 H 0.109 0.891 21 C -0.162 4.162 22 N -0.486 5.486 23 Si 0.763 3.237 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.093 4.093 28 C -0.121 4.121 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.146 0.854 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.828 -4.712 9.547 11.690 hybrid contribution -0.312 0.389 -1.989 2.050 sum 4.515 -4.323 7.558 9.808 Atomic orbital electron populations 1.23257 0.76262 1.03582 1.02633 1.86465 1.23455 1.33281 1.84140 1.23437 0.91476 0.81530 0.72097 1.90651 1.66715 1.36340 1.44405 1.19705 0.87692 0.94820 0.93792 0.86390 1.58713 1.17217 1.02468 1.57536 1.20107 1.04375 0.95525 0.95274 1.20765 0.99099 0.95641 0.96424 1.21152 1.01142 0.98410 0.92986 1.18719 0.95919 0.92985 0.92012 1.17864 0.95848 1.10520 0.90072 1.20703 0.93675 0.96608 0.96636 1.20526 1.00911 1.09532 0.92556 1.20833 0.93779 0.96171 0.97878 1.21125 0.98318 1.08756 0.97114 1.19318 0.85949 0.91610 0.92146 1.83981 1.23209 1.64517 1.34786 1.21290 1.04389 1.36281 0.85342 0.89117 1.25269 0.96199 0.96290 0.98452 1.70032 1.18943 1.37617 1.22009 0.85818 0.78778 0.79171 0.79922 1.19492 1.20235 1.19454 1.21214 0.95832 0.97244 0.95058 1.20785 0.99309 0.98421 0.93624 0.92077 0.91581 0.88172 0.82948 0.82967 0.86113 0.86109 0.86860 0.87430 0.87403 0.85362 0.91875 0.85417 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.36 -5.30 10.57 -39.26 -0.41 -5.71 16 3 C 0.47 7.60 7.18 36.01 0.26 7.86 16 4 O -0.50 -9.25 16.00 -18.75 -0.30 -9.55 16 5 C 0.15 2.04 3.50 -70.01 -0.24 1.79 16 6 H 0.12 1.27 8.00 -51.93 -0.42 0.86 16 7 N -0.83 -10.03 8.81 -6.65 -0.06 -10.08 16 8 C -0.15 -2.31 4.93 -104.55 -0.52 -2.82 16 9 C -0.10 -1.49 9.65 -39.63 -0.38 -1.87 16 10 C -0.12 -1.97 9.52 -39.24 -0.37 -2.34 16 11 C 0.00 0.07 5.27 -104.91 -0.55 -0.48 16 12 C -0.14 -2.90 5.49 -104.72 -0.57 -3.48 16 13 C -0.06 -1.01 9.52 -39.27 -0.37 -1.38 16 14 C -0.22 -3.60 10.03 -39.59 -0.40 -4.00 16 15 C -0.07 -1.21 10.03 -39.55 -0.40 -1.61 16 16 C -0.23 -4.93 9.16 -39.44 -0.36 -5.29 16 17 C 0.16 3.84 6.56 -38.74 -0.25 3.59 16 18 O -0.16 -4.41 8.14 0.38 0.00 -4.41 16 19 C -0.40 -10.70 9.49 30.88 0.29 -10.41 16 20 H 0.09 2.27 5.21 -52.48 -0.27 1.99 16 21 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16 22 N -0.85 -24.32 13.67 55.48 0.76 -23.56 16 23 Si 0.94 20.14 29.55 -169.99 -5.02 15.12 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 C -0.08 -1.52 8.79 -39.24 -0.35 -1.87 16 28 C -0.10 -1.82 9.27 -39.63 -0.37 -2.18 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.36 3.44 9.06 -39.30 -0.36 3.08 16 33 H 0.35 4.67 6.92 -39.29 -0.27 4.40 16 34 H 0.12 1.41 8.03 -52.49 -0.42 0.99 16 35 H 0.12 1.77 8.05 -52.49 -0.42 1.35 16 36 H 0.11 1.66 8.04 -52.49 -0.42 1.23 16 37 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.69 5.64 -52.49 -0.30 2.40 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.13 2.83 7.72 -52.49 -0.41 2.43 16 42 H 0.12 1.95 6.65 -52.48 -0.35 1.60 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -31.81 364.64 -8.04 -39.85 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -4.88 Total: 14.75 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -3.62 Total: -21.90 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.70 Total: -33.65 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.71 Total: -19.67 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.81 -8.04 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.832 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds