Wall clock time and date at job start Tue Mar 31 2020 15:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99696 * 2 1 4 4 O 1.20827 * 119.99941 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00090 * 179.97438 * 3 2 1 6 6 H 1.08993 * 109.47001 * 319.99739 * 5 3 2 7 7 N 1.46905 * 109.47107 * 199.99896 * 5 3 2 8 8 C 1.50698 * 109.46771 * 80.00096 * 5 3 2 9 9 C 1.38340 * 119.86914 * 259.99709 * 8 5 3 10 10 C 1.38008 * 120.12309 * 180.02562 * 9 8 5 11 11 C 1.39390 * 119.87318 * 359.97438 * 10 9 8 12 12 C 1.48282 * 120.12217 * 179.97438 * 11 10 9 13 13 C 1.39292 * 120.16191 * 309.72139 * 12 11 10 14 14 C 1.38010 * 119.94493 * 180.23465 * 13 12 11 15 15 C 1.38451 * 120.27306 * 0.06722 * 14 13 12 16 16 C 1.38114 * 120.32126 * 359.95333 * 15 14 13 17 17 C 1.38752 * 120.05248 * 0.02562 * 16 15 14 18 18 O 1.35663 * 120.13506 * 179.97438 * 17 16 15 19 19 C 1.34808 * 117.00265 * 354.40468 * 18 17 16 20 20 H 1.08003 * 119.99936 * 5.05719 * 19 18 17 21 21 C 1.38650 * 120.00224 * 185.06401 * 19 18 17 22 22 N 1.31559 * 119.99914 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99827 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47385 * 60.00002 * 23 21 19 25 25 H 1.48508 * 109.46896 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47188 * 299.99446 * 23 21 19 27 27 C 1.39392 * 119.74922 * 0.25693 * 11 10 9 28 28 C 1.38007 * 119.86784 * 359.46586 * 27 11 10 29 29 H 1.08994 * 109.47427 * 299.99607 * 1 2 3 30 30 H 1.08998 * 109.47486 * 60.00701 * 1 2 3 31 31 H 1.09001 * 109.46943 * 180.02562 * 1 2 3 32 32 H 1.00894 * 110.99840 * 176.05038 * 7 5 3 33 33 H 1.00906 * 110.99684 * 299.99942 * 7 5 3 34 34 H 1.07999 * 119.93796 * 359.97438 * 9 8 5 35 35 H 1.08000 * 120.05636 * 180.02562 * 10 9 8 36 36 H 1.07994 * 120.02468 * 0.25468 * 13 12 11 37 37 H 1.08001 * 119.86223 * 180.02562 * 14 13 12 38 38 H 1.07992 * 119.83661 * 179.97438 * 15 14 13 39 39 H 1.07998 * 119.96961 * 180.02562 * 16 15 14 40 40 H 0.96993 * 119.99768 * 180.02562 * 22 21 19 41 41 H 1.07998 * 120.06449 * 179.72333 * 27 11 10 42 42 H 1.08003 * 119.93090 * 180.27488 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9701 0.5081 0.6615 7 7 3.9869 2.6005 0.4742 8 6 4.0813 1.0547 -1.3984 9 6 4.5732 -0.1855 -1.7641 10 6 5.0467 -0.3930 -3.0438 11 6 5.0281 0.6499 -3.9685 12 6 5.5359 0.4333 -5.3447 13 6 6.7878 -0.1433 -5.5460 14 6 7.2582 -0.3384 -6.8288 15 6 6.4911 0.0381 -7.9182 16 6 5.2485 0.6111 -7.7314 17 6 4.7623 0.8131 -6.4476 18 8 3.5421 1.3763 -6.2622 19 6 2.9011 1.8235 -7.3606 20 1 3.3236 1.6522 -8.3397 21 6 1.6995 2.5035 -7.2334 22 7 1.1847 2.7118 -6.0408 23 14 0.8118 3.1238 -8.7554 24 1 0.4828 1.9763 -9.6388 25 1 -0.4407 3.8121 -8.3518 26 1 1.6870 4.0756 -9.4855 27 6 4.5357 1.8987 -3.5929 28 6 4.0596 2.0929 -2.3122 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.9917 2.6570 0.5450 33 1 3.6249 3.3293 -0.1225 34 1 4.5875 -0.9926 -1.0467 35 1 5.4300 -1.3617 -3.3283 36 1 7.3897 -0.4377 -4.6991 37 1 8.2288 -0.7859 -6.9834 38 1 6.8663 -0.1175 -8.9189 39 1 4.6548 0.9022 -8.5853 40 1 0.3439 3.1872 -5.9519 41 1 4.5231 2.7115 -4.3039 42 1 3.6738 3.0589 -2.0214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243588279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:57 Heat of formation + Delta-G solvation = -77.627322 kcal Electronic energy + Delta-G solvation = -27212.711108 eV Core-core repulsion = 23315.677459 eV Total energy + Delta-G solvation = -3897.033650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77275 -41.03160 -39.87522 -38.11671 -37.67342 -36.03162 -34.31578 -32.91511 -31.95874 -30.68490 -29.93884 -29.04460 -27.36873 -26.66111 -24.07393 -23.81062 -22.85554 -22.14641 -21.30266 -19.81890 -19.02861 -18.92687 -18.00997 -17.86283 -17.25184 -16.57984 -16.43010 -16.30373 -16.09349 -15.81103 -15.51654 -15.31941 -15.12887 -14.82001 -14.49862 -14.37704 -14.28219 -14.16981 -13.63343 -13.55577 -13.49091 -13.01783 -12.91820 -12.88912 -12.54896 -12.41514 -12.20699 -12.11222 -11.94817 -11.84590 -11.68573 -11.17531 -10.82244 -10.25732 -9.94111 -9.83730 -9.34571 -8.81282 -8.47637 -6.14717 -0.03383 0.49788 0.68478 0.78895 1.14876 1.30661 1.40934 1.46013 1.66421 2.13724 2.72111 2.87754 3.19040 3.47804 3.52161 3.64625 3.78702 3.86145 3.87707 4.03323 4.18467 4.25442 4.27095 4.28245 4.30190 4.50500 4.58054 4.62627 4.64704 4.75244 4.95165 5.03894 5.08195 5.13621 5.17759 5.28974 5.44634 5.49339 5.55147 5.66516 5.74926 5.80806 5.83929 5.97834 6.07588 6.22952 6.36380 6.65795 6.96288 7.77590 8.72790 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009571 B = 0.004500 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.680657 B = 6220.571081 C = 8356.675002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.531 6.531 5 C 0.160 3.840 6 H 0.158 0.842 7 N -0.824 5.824 8 C -0.140 4.140 9 C -0.088 4.088 10 C -0.116 4.116 11 C -0.022 4.022 12 C -0.148 4.148 13 C -0.057 4.057 14 C -0.191 4.191 15 C -0.069 4.069 16 C -0.251 4.251 17 C 0.123 3.877 18 O -0.211 6.211 19 C -0.415 4.415 20 H 0.099 0.901 21 C -0.017 4.017 22 N -0.910 5.910 23 Si 1.011 2.989 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.258 1.258 27 C -0.103 4.103 28 C -0.113 4.113 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.136 0.864 32 H 0.370 0.630 33 H 0.347 0.653 34 H 0.167 0.833 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.117 0.883 40 H 0.269 0.731 41 H 0.085 0.915 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.460 -7.926 9.260 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.309 3.691 4 O -0.420 6.420 5 C 0.047 3.953 6 H 0.175 0.825 7 N -0.358 5.358 8 C -0.142 4.142 9 C -0.106 4.106 10 C -0.134 4.134 11 C -0.022 4.022 12 C -0.150 4.150 13 C -0.075 4.075 14 C -0.210 4.210 15 C -0.087 4.087 16 C -0.271 4.271 17 C 0.071 3.929 18 O -0.117 6.117 19 C -0.491 4.491 20 H 0.116 0.884 21 C -0.215 4.215 22 N -0.547 5.547 23 Si 0.831 3.169 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.122 4.122 28 C -0.132 4.132 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.154 0.846 32 H 0.187 0.813 33 H 0.161 0.839 34 H 0.185 0.815 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.162 0.838 39 H 0.135 0.865 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.494 -7.659 10.246 14.825 hybrid contribution -0.824 1.123 -2.124 2.540 sum 6.670 -6.536 8.122 12.376 Atomic orbital electron populations 1.23518 0.75056 1.05788 1.02029 1.86456 1.24732 1.32548 1.83637 1.24069 0.92609 0.81378 0.71075 1.90640 1.67708 1.37542 1.46070 1.19862 0.85992 0.96384 0.93048 0.82471 1.58733 1.18391 1.01816 1.56852 1.20337 1.03145 0.95016 0.95743 1.21261 0.96721 0.96193 0.96456 1.21446 1.00606 0.98333 0.92997 1.18875 0.97306 0.93530 0.92523 1.18321 0.96751 1.09901 0.89996 1.21178 0.92366 0.95323 0.98589 1.21133 1.01915 1.06366 0.91546 1.21254 0.92233 0.94803 1.00382 1.21272 0.99994 1.09815 0.95975 1.19964 0.85939 0.92702 0.94263 1.83970 1.25404 1.67322 1.34982 1.21735 1.04895 1.36485 0.86018 0.88405 1.26449 0.96901 0.96409 1.01775 1.70201 1.19713 1.40202 1.24608 0.84755 0.77370 0.78918 0.75887 1.18187 1.19963 1.18273 1.20999 0.98520 0.97125 0.95527 1.20819 0.99523 0.99494 0.93361 0.91140 0.93803 0.84585 0.81255 0.83878 0.81539 0.83488 0.83174 0.82811 0.83805 0.86501 0.92229 0.89694 0.87029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.36 -10.06 10.57 -51.41 -0.54 -10.60 16 3 C 0.47 14.61 7.18 71.24 0.51 15.12 16 4 O -0.53 -20.25 16.00 21.96 0.35 -19.90 16 5 C 0.16 3.94 3.50 43.42 0.15 4.09 16 6 H 0.16 2.67 8.00 -2.39 -0.02 2.66 16 7 N -0.82 -19.09 8.81 -174.95 -1.54 -20.63 16 8 C -0.14 -4.12 4.93 -19.82 -0.10 -4.22 16 9 C -0.09 -2.32 9.65 22.24 0.21 -2.11 16 10 C -0.12 -3.59 9.52 22.49 0.21 -3.37 16 11 C -0.02 -0.88 5.27 -20.05 -0.11 -0.99 16 12 C -0.15 -6.14 5.49 -19.93 -0.11 -6.24 16 13 C -0.06 -1.80 9.52 22.47 0.21 -1.59 16 14 C -0.19 -5.52 10.03 22.27 0.22 -5.30 16 15 C -0.07 -2.26 10.03 22.29 0.22 -2.04 16 16 C -0.25 -10.79 9.16 22.36 0.20 -10.59 16 17 C 0.12 6.01 6.56 22.81 0.15 6.16 16 18 O -0.21 -12.41 8.14 -21.55 -0.18 -12.59 16 19 C -0.42 -24.03 9.49 67.92 0.64 -23.38 16 20 H 0.10 5.23 5.21 -2.91 -0.02 5.21 16 21 C -0.02 -0.96 5.49 84.83 0.47 -0.49 16 22 N -0.91 -56.14 13.67 21.61 0.30 -55.85 16 23 Si 1.01 43.43 29.55 68.60 2.03 45.45 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 27 C -0.10 -4.50 8.79 22.49 0.20 -4.30 16 28 C -0.11 -4.21 9.27 22.24 0.21 -4.01 16 29 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 30 H 0.04 1.22 8.13 -2.39 -0.02 1.20 16 31 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.37 6.50 9.06 -89.70 -0.81 5.69 16 33 H 0.35 9.31 6.92 -89.69 -0.62 8.69 16 34 H 0.17 2.91 8.03 -2.91 -0.02 2.88 16 35 H 0.15 3.72 8.05 -2.91 -0.02 3.70 16 36 H 0.15 3.66 8.04 -2.91 -0.02 3.63 16 37 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 38 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 39 H 0.12 5.14 5.64 -2.91 -0.02 5.13 16 40 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.08 4.31 7.72 -2.91 -0.02 4.29 16 42 H 0.11 4.10 6.65 -2.91 -0.02 4.08 16 Total: -1.00 -78.01 364.64 4.57 -73.44 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.35 Total: 42.06 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 4.51 Total: -41.38 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -1.25 Total: -76.48 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.37 Total: -43.09 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -78.01 4.57 -73.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.186 kcal (2) G-P(sol) polarization free energy of solvation -78.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds