Wall clock time and date at job start Tue Mar 31 2020 14:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34829 * 116.99768 * 2 1 4 4 O 1.21555 * 120.00165 * 359.97438 * 3 2 1 5 5 C 1.47122 * 119.99987 * 180.02562 * 3 2 1 6 6 C 1.39537 * 120.44261 * 356.02018 * 5 3 2 7 7 C 1.37791 * 120.19042 * 180.02562 * 6 5 3 8 8 C 1.39762 * 121.15827 * 359.97438 * 7 6 5 9 9 C 1.48246 * 119.55048 * 179.97438 * 8 7 6 10 10 C 1.39429 * 120.04698 * 180.02562 * 9 8 7 11 11 C 1.38000 * 120.05706 * 179.70342 * 10 9 8 12 12 C 1.38644 * 120.14436 * 0.54880 * 11 10 9 13 13 O 1.35942 * 119.95573 * 179.71952 * 12 11 10 14 14 C 1.42896 * 117.00030 * 359.73539 * 13 12 11 15 15 C 1.39450 * 120.08676 * 359.45517 * 12 11 10 16 16 N 1.39971 * 120.02503 * 180.24929 * 15 12 11 17 17 C 1.38452 * 119.94590 * 0.26682 * 15 12 11 18 18 C 1.38771 * 120.90306 * 0.28082 * 8 7 6 19 19 C 1.40542 * 119.72878 * 359.47006 * 18 8 7 20 20 C 1.40912 * 120.54955 * 180.22449 * 19 18 8 21 21 H 1.07993 * 120.00573 * 213.25955 * 20 19 18 22 22 C 1.40278 * 119.99686 * 33.25808 * 20 19 18 23 23 N 1.30623 * 120.00282 * 9.36347 * 22 20 19 24 24 Si 1.86798 * 119.99987 * 189.35902 * 22 20 19 25 25 H 1.48500 * 109.47058 * 60.00494 * 24 22 20 26 26 H 1.48508 * 109.47373 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47379 * 300.00217 * 24 22 20 28 28 H 1.08993 * 109.47276 * 60.00206 * 1 2 3 29 29 H 1.09004 * 109.46757 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46832 * 299.99514 * 1 2 3 31 31 H 1.07993 * 119.90617 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.42188 * 180.02562 * 7 6 5 33 33 H 1.08003 * 119.97539 * 359.95935 * 10 9 8 34 34 H 1.08001 * 119.92851 * 180.29984 * 11 10 9 35 35 H 1.08994 * 109.47505 * 59.99517 * 14 13 12 36 36 H 1.09003 * 109.47380 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.47260 * 299.99139 * 14 13 12 38 38 H 0.97003 * 120.00333 * 359.97438 * 16 15 12 39 39 H 0.97001 * 120.00568 * 179.97438 * 16 15 12 40 40 H 1.08003 * 120.07372 * 180.02562 * 17 15 12 41 41 H 1.08004 * 120.13714 * 179.71693 * 18 8 7 42 42 H 0.96999 * 120.00162 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2014 0.0000 4 8 1.4021 2.2208 -0.0005 5 6 3.5333 1.2784 -0.0006 6 6 4.3022 0.1170 0.0824 7 6 5.6779 0.1952 0.0820 8 6 6.3321 1.4275 -0.0013 9 6 7.8139 1.4702 0.0017 10 6 8.4772 2.6939 -0.0803 11 6 9.8566 2.7344 -0.0714 12 6 10.5871 1.5587 0.0077 13 8 11.9458 1.6027 0.0105 14 6 12.5533 2.8932 -0.0763 15 6 9.9300 0.3315 0.0900 16 7 10.6688 -0.8543 0.1750 17 6 8.5462 0.2870 0.0870 18 6 5.6135 2.6120 -0.0803 19 6 4.2086 2.5756 -0.0882 20 6 3.4617 3.7676 -0.1727 21 1 2.5086 3.8444 0.3292 22 6 3.9563 4.8544 -0.9089 23 7 5.0124 4.7060 -1.6631 24 14 3.1046 6.5140 -0.8106 25 1 3.1195 6.9957 0.5940 26 1 3.8171 7.4881 -1.6760 27 1 1.6997 6.3776 -1.2723 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8178 -0.8460 0.1471 32 1 6.2609 -0.7116 0.1462 33 1 7.9110 3.6112 -0.1468 34 1 10.3682 3.6837 -0.1301 35 1 12.2389 3.5007 0.7722 36 1 13.6380 2.7857 -0.0647 37 1 12.2467 3.3775 -1.0035 38 1 11.6383 -0.8227 0.1764 39 1 10.2114 -1.7078 0.2326 40 1 8.0351 -0.6623 0.1511 41 1 6.1317 3.5577 -0.1396 42 1 5.3541 5.4574 -2.1725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244896671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:10 Heat of formation + Delta-G solvation = -77.578201 kcal Electronic energy + Delta-G solvation = -26808.575658 eV Core-core repulsion = 22911.544138 eV Total energy + Delta-G solvation = -3897.031520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.92052 -39.20315 -37.84591 -36.58703 -35.23390 -34.27171 -33.79521 -31.19899 -29.91771 -28.81047 -28.34709 -27.35682 -26.31580 -25.50008 -23.03459 -22.26485 -20.99723 -20.48243 -19.41748 -17.98737 -17.43869 -16.68573 -16.61881 -16.11144 -15.74769 -15.57485 -15.33900 -15.21136 -14.80911 -14.45554 -13.83727 -13.53650 -13.37411 -12.97827 -12.91391 -12.82684 -12.53011 -12.51995 -12.02331 -11.71683 -11.52776 -11.36464 -11.32775 -11.20741 -10.93689 -10.85060 -10.76484 -10.60713 -10.24444 -10.14968 -9.94022 -9.60590 -9.40324 -8.84134 -8.45194 -7.54403 -7.37845 -7.00629 -6.70084 -4.56737 1.40314 1.92742 2.46324 2.78129 3.00501 3.05768 3.19231 3.43982 3.76301 3.82427 3.84734 4.13288 4.35541 4.63077 5.05086 5.18903 5.19702 5.44114 5.46641 5.49350 5.60728 5.64375 5.68762 5.80667 5.85633 5.98466 6.03992 6.23777 6.26833 6.39913 6.50005 6.74257 6.84043 6.90008 7.00619 7.14278 7.17514 7.30214 7.36103 7.50157 7.59171 7.82786 7.89207 7.90187 8.01807 8.07190 8.47934 8.61469 8.70818 9.10274 9.94094 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012080 B = 0.003753 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.286393 B = 7459.667702 C = 9675.651616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.374 6.374 3 C 0.503 3.497 4 O -0.523 6.523 5 C -0.261 4.261 6 C -0.029 4.029 7 C -0.240 4.240 8 C -0.020 4.020 9 C -0.005 4.005 10 C -0.127 4.127 11 C -0.160 4.160 12 C 0.032 3.968 13 O -0.327 6.327 14 C 0.034 3.966 15 C 0.190 3.810 16 N -0.881 5.881 17 C -0.162 4.162 18 C -0.134 4.134 19 C 0.148 3.852 20 C -0.409 4.409 21 H 0.112 0.888 22 C 0.068 3.932 23 N -0.777 5.777 24 Si 0.920 3.080 25 H -0.260 1.260 26 H -0.277 1.277 27 H -0.260 1.260 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.398 0.602 39 H 0.395 0.605 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.894 -4.346 1.930 10.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.293 6.293 3 C 0.354 3.646 4 O -0.414 6.414 5 C -0.264 4.264 6 C -0.047 4.047 7 C -0.259 4.259 8 C -0.021 4.021 9 C -0.006 4.006 10 C -0.147 4.147 11 C -0.180 4.180 12 C -0.015 4.015 13 O -0.242 6.242 14 C -0.062 4.062 15 C 0.087 3.913 16 N -0.422 5.422 17 C -0.185 4.185 18 C -0.152 4.152 19 C 0.144 3.856 20 C -0.436 4.436 21 H 0.129 0.871 22 C -0.152 4.152 23 N -0.401 5.401 24 Si 0.744 3.256 25 H -0.185 1.185 26 H -0.202 1.202 27 H -0.185 1.185 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.226 0.774 39 H 0.222 0.778 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.929 -4.012 1.759 9.946 hybrid contribution -0.347 0.708 -0.197 0.812 sum 8.582 -3.304 1.562 9.328 Atomic orbital electron populations 1.22962 0.78724 1.01975 1.01702 1.86590 1.21420 1.35064 1.86187 1.21291 0.89553 0.80163 0.73545 1.90703 1.66971 1.35257 1.48500 1.19741 0.86759 0.94188 1.25687 1.20710 0.93352 0.96096 0.94562 1.20222 0.93579 0.95648 1.16500 1.18530 0.89774 0.94114 0.99649 1.18777 0.93023 0.91952 0.96880 1.21007 0.92901 0.98273 1.02486 1.20891 0.94907 0.96172 1.05987 1.18402 0.81870 0.92970 1.08286 1.85870 1.17392 1.30769 1.90162 1.22902 0.97897 0.84282 1.01111 1.16959 0.90476 0.84450 0.99425 1.42199 1.08511 1.05034 1.86491 1.20570 0.90196 0.99038 1.08659 1.21466 0.93338 0.96434 1.04001 1.18366 0.91179 0.90087 0.85943 1.20364 1.05434 0.94577 1.23184 0.87081 1.26228 0.94226 1.01326 0.93469 1.69701 1.18860 1.33497 1.18021 0.86142 0.80507 0.79378 0.79597 1.18453 1.20175 1.18457 0.92804 0.89484 0.92862 0.87771 0.88448 0.85165 0.85986 0.93044 0.89006 0.93016 0.77441 0.77774 0.85260 0.85411 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.57 101.05 1.07 1.71 16 2 O -0.37 -7.66 9.84 -40.85 -0.40 -8.06 16 3 C 0.50 12.13 7.87 34.34 0.27 12.40 16 4 O -0.52 -13.58 13.47 -19.31 -0.26 -13.84 16 5 C -0.26 -6.47 6.07 -102.48 -0.62 -7.09 16 6 C -0.03 -0.64 9.60 -39.26 -0.38 -1.01 16 7 C -0.24 -5.09 9.37 -39.18 -0.37 -5.46 16 8 C -0.02 -0.44 5.86 -105.02 -0.62 -1.06 16 9 C -0.01 -0.11 5.88 -104.90 -0.62 -0.72 16 10 C -0.13 -2.34 9.40 -39.23 -0.37 -2.70 16 11 C -0.16 -2.55 9.02 -39.52 -0.36 -2.90 16 12 C 0.03 0.50 6.71 -38.98 -0.26 0.24 16 13 O -0.33 -4.42 9.73 -19.56 -0.19 -4.61 16 14 C 0.03 0.33 9.81 101.05 0.99 1.32 16 15 C 0.19 2.95 6.76 -83.61 -0.57 2.38 16 16 N -0.88 -10.57 9.09 32.49 0.30 -10.28 16 17 C -0.16 -2.76 9.25 -39.07 -0.36 -3.12 16 18 C -0.13 -3.26 8.00 -38.52 -0.31 -3.57 16 19 C 0.15 3.87 5.66 -104.69 -0.59 3.28 16 20 C -0.41 -10.78 7.96 -37.80 -0.30 -11.08 16 21 H 0.11 3.03 5.75 -52.49 -0.30 2.73 16 22 C 0.07 1.65 5.26 -17.30 -0.09 1.56 16 23 N -0.78 -18.88 11.10 55.56 0.62 -18.27 16 24 Si 0.92 18.56 29.57 -169.99 -5.03 13.53 16 25 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 26 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 27 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.10 2.06 7.62 -52.49 -0.40 1.66 16 32 H 0.10 1.79 6.09 -52.49 -0.32 1.47 16 33 H 0.13 2.47 6.14 -52.48 -0.32 2.15 16 34 H 0.12 1.62 6.28 -52.49 -0.33 1.29 16 35 H 0.05 0.48 7.64 -51.93 -0.40 0.08 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 38 H 0.40 4.30 8.18 -40.82 -0.33 3.97 16 39 H 0.39 3.91 8.84 -40.82 -0.36 3.55 16 40 H 0.13 2.02 6.13 -52.48 -0.32 1.70 16 41 H 0.13 3.10 4.61 -52.48 -0.24 2.86 16 42 H 0.29 6.32 8.29 -40.82 -0.34 5.99 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -29.82 352.95 -7.67 -37.49 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -4.55 Total: 14.54 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -3.47 Total: -15.82 kcal Atomic # 7 Polarization: -29.46 SS G_CDS: 0.91 Total: -28.55 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.85 Total: -26.52 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.82 -7.67 -37.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244896671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.086 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds