Wall clock time and date at job start Tue Mar 31 2020 14:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34793 * 116.99751 * 2 1 4 4 O 1.21555 * 119.99983 * 359.97438 * 3 2 1 5 5 C 1.47137 * 120.00291 * 179.97438 * 3 2 1 6 6 C 1.39927 * 120.08900 * 6.28399 * 5 3 2 7 7 C 1.36426 * 120.17378 * 179.70038 * 6 5 3 8 8 C 1.39771 * 120.36755 * 0.27921 * 7 6 5 9 9 C 1.48204 * 119.90980 * 179.97438 * 8 7 6 10 10 C 1.38696 * 120.10351 * 129.72470 * 9 8 7 11 11 C 1.40593 * 119.55953 * 179.72705 * 10 9 8 12 12 C 1.41253 * 120.10890 * 180.26859 * 11 10 9 13 13 H 1.07996 * 119.99872 * 214.71429 * 12 11 10 14 14 C 1.39867 * 120.00131 * 34.72586 * 12 11 10 15 15 N 1.30893 * 120.00060 * 356.25941 * 14 12 11 16 16 Si 1.86800 * 120.00160 * 176.26394 * 14 12 11 17 17 H 1.48504 * 109.46966 * 89.99605 * 16 14 12 18 18 H 1.48493 * 109.47252 * 209.99529 * 16 14 12 19 19 H 1.48500 * 109.46900 * 329.99857 * 16 14 12 20 20 C 1.40925 * 119.77268 * 0.57219 * 11 10 9 21 21 C 1.36392 * 120.20668 * 359.68028 * 20 11 10 22 22 C 1.39161 * 120.44748 * 0.04698 * 21 20 11 23 23 O 1.35579 * 119.88852 * 179.97438 * 22 21 20 24 24 C 1.42901 * 116.99878 * 0.02562 * 23 22 21 25 25 C 1.39182 * 120.18068 * 0.02562 * 8 7 6 26 26 C 1.38695 * 119.81743 * 359.97438 * 25 8 7 27 27 N 1.38880 * 120.17472 * 179.97438 * 26 25 8 28 28 H 1.09000 * 109.47822 * 300.00005 * 1 2 3 29 29 H 1.09001 * 109.47266 * 60.00428 * 1 2 3 30 30 H 1.09007 * 109.46797 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.91083 * 359.97438 * 6 5 3 32 32 H 1.08010 * 119.81479 * 180.29532 * 7 6 5 33 33 H 1.07998 * 120.21871 * 0.02562 * 10 9 8 34 34 H 0.96994 * 120.00359 * 180.02562 * 15 14 12 35 35 H 1.07994 * 119.89242 * 179.70647 * 20 11 10 36 36 H 1.07996 * 119.77584 * 180.02562 * 21 20 11 37 37 H 1.09001 * 109.46692 * 299.99659 * 24 23 22 38 38 H 1.08996 * 109.47304 * 60.00437 * 24 23 22 39 39 H 1.09001 * 109.46744 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.09203 * 179.97438 * 25 8 7 41 41 H 0.96998 * 120.00449 * 354.37432 * 27 26 25 42 42 H 0.97002 * 119.99626 * 174.36552 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4018 2.2205 -0.0005 5 6 3.5332 1.2782 0.0006 6 6 4.2969 0.1132 -0.1314 7 6 5.6594 0.1833 -0.1372 8 6 6.3039 1.4166 -0.0058 9 6 7.7846 1.4810 -0.0129 10 6 8.4380 2.3750 -0.8481 11 6 9.8428 2.4305 -0.8413 12 6 10.5200 3.3406 -1.6830 13 1 11.4695 3.0683 -2.1196 14 6 9.9609 4.5943 -1.9509 15 7 8.7770 4.8968 -1.4817 16 14 10.9038 5.8372 -2.9784 17 1 10.5626 5.6548 -4.4121 18 1 10.5361 7.2117 -2.5531 19 1 12.3622 5.6332 -2.7868 20 6 10.5731 1.5707 0.0033 21 6 9.9210 0.6915 0.8170 22 6 8.5307 0.6330 0.8217 23 8 7.8942 -0.2456 1.6347 24 6 8.7133 -1.0782 2.4581 25 6 5.5591 2.5841 0.1327 26 6 4.1736 2.5216 0.1396 27 7 3.4231 3.6819 0.2780 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.8064 -0.8437 -0.2334 32 1 6.2431 -0.7191 -0.2442 33 1 7.8713 3.0274 -1.4957 34 1 8.3891 5.7661 -1.6678 35 1 11.6523 1.6085 0.0066 36 1 10.4876 0.0361 1.4618 37 1 9.3663 -1.6822 1.8281 38 1 9.3183 -0.4552 3.1167 39 1 8.0799 -1.7326 3.0570 40 1 6.0587 3.5362 0.2346 41 1 3.8651 4.5276 0.4517 42 1 2.4568 3.6466 0.2007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245902978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:03 Heat of formation + Delta-G solvation = -74.914088 kcal Electronic energy + Delta-G solvation = -27076.298685 eV Core-core repulsion = 23179.382690 eV Total energy + Delta-G solvation = -3896.915995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.49619 -39.22529 -38.24055 -36.52612 -36.26551 -34.20876 -33.29385 -31.99085 -29.21880 -29.02820 -28.54851 -27.30625 -26.86216 -24.72751 -23.67192 -21.97831 -21.14295 -20.65094 -20.03930 -17.69753 -17.45527 -16.93182 -16.85509 -16.40045 -16.23830 -15.85066 -15.32759 -14.92074 -14.67461 -14.38427 -13.91435 -13.62226 -13.47070 -13.27117 -13.07743 -12.91852 -12.74685 -12.37248 -12.15938 -11.94051 -11.74773 -11.66170 -11.27899 -11.08916 -10.91276 -10.82624 -10.80165 -10.70588 -10.32456 -10.20556 -9.93989 -9.87822 -9.46973 -9.12583 -8.61484 -7.49539 -7.23067 -6.94204 -6.63570 -4.36056 1.10050 2.11311 2.51741 2.78939 2.84027 2.98142 3.09422 3.10732 3.18424 3.96907 4.20555 4.22469 4.33776 4.65478 4.98014 5.02299 5.09386 5.25709 5.38871 5.46076 5.48770 5.59333 5.65859 5.80788 5.84199 5.98254 6.00863 6.05574 6.26100 6.37295 6.48420 6.58705 6.81449 6.86261 6.99932 7.08388 7.20921 7.24836 7.39244 7.44792 7.64778 7.74500 7.91657 7.92441 8.14780 8.22409 8.36314 8.56393 8.86970 8.90647 10.28978 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011974 B = 0.003783 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.773126 B = 7398.814242 C = 9344.830119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.525 3.475 4 O -0.537 6.537 5 C -0.246 4.246 6 C -0.023 4.023 7 C -0.169 4.169 8 C 0.088 3.912 9 C -0.088 4.088 10 C -0.094 4.094 11 C 0.076 3.924 12 C -0.465 4.465 13 H 0.075 0.925 14 C 0.071 3.929 15 N -0.817 5.817 16 Si 0.913 3.087 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.169 4.169 21 C -0.182 4.182 22 C 0.033 3.967 23 O -0.321 6.321 24 C 0.036 3.964 25 C -0.203 4.203 26 C 0.288 3.712 27 N -0.861 5.861 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.142 0.858 34 H 0.277 0.723 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.083 0.917 40 H 0.137 0.863 41 H 0.395 0.605 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.569 -6.968 3.644 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.376 3.624 4 O -0.429 6.429 5 C -0.252 4.252 6 C -0.042 4.042 7 C -0.188 4.188 8 C 0.087 3.913 9 C -0.089 4.089 10 C -0.114 4.114 11 C 0.074 3.926 12 C -0.496 4.496 13 H 0.093 0.907 14 C -0.143 4.143 15 N -0.445 5.445 16 Si 0.739 3.261 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.189 1.189 20 C -0.189 4.189 21 C -0.200 4.200 22 C -0.011 4.011 23 O -0.236 6.236 24 C -0.060 4.060 25 C -0.226 4.226 26 C 0.177 3.823 27 N -0.408 5.408 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.160 0.840 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.155 0.845 41 H 0.223 0.777 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -10.234 -6.549 3.654 12.688 hybrid contribution 0.433 0.997 -0.195 1.104 sum -9.801 -5.552 3.458 11.783 Atomic orbital electron populations 1.23205 0.76791 1.03363 1.02334 1.86589 1.22894 1.32897 1.84693 1.21169 0.88963 0.80847 0.71445 1.90441 1.66886 1.35595 1.50001 1.18274 0.87875 0.93948 1.25130 1.20695 0.93652 0.96349 0.93484 1.20684 0.93524 0.97715 1.06916 1.18894 0.92739 0.91946 0.87724 1.18049 0.89731 0.99914 1.01194 1.21691 0.94960 0.96050 0.98660 1.17548 0.91551 0.91626 0.91843 1.19374 1.05819 0.98386 1.26034 0.90717 1.25793 0.94723 0.99295 0.94535 1.69706 1.14627 1.22304 1.37896 0.86223 0.80563 0.79249 0.80093 1.19585 1.20379 1.18880 1.20817 0.98293 1.00790 0.98966 1.20385 0.92466 1.03249 1.03940 1.18601 0.90302 0.95008 0.97162 1.85908 1.34976 1.49443 1.53282 1.22752 0.95827 0.93629 0.93787 1.20838 0.90302 0.99786 1.11650 1.17592 0.90771 0.85500 0.88426 1.43336 1.11570 1.07089 1.78766 0.92123 0.92074 0.88315 0.85478 0.85693 0.84041 0.91162 0.88387 0.88193 0.93817 0.93886 0.89858 0.84532 0.77723 0.74846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.35 -4.77 9.82 -40.74 -0.40 -5.17 16 3 C 0.53 8.29 7.86 34.34 0.27 8.56 16 4 O -0.54 -8.86 13.43 -19.31 -0.26 -9.11 16 5 C -0.25 -4.14 5.89 -104.78 -0.62 -4.76 16 6 C -0.02 -0.37 9.54 -39.60 -0.38 -0.75 16 7 C -0.17 -3.02 8.69 -39.66 -0.34 -3.36 16 8 C 0.09 1.78 5.27 -104.88 -0.55 1.23 16 9 C -0.09 -1.98 5.47 -104.80 -0.57 -2.55 16 10 C -0.09 -2.31 8.10 -38.52 -0.31 -2.62 16 11 C 0.08 1.93 5.55 -106.85 -0.59 1.33 16 12 C -0.46 -11.84 9.03 -37.83 -0.34 -12.18 16 13 H 0.07 1.84 7.85 -52.49 -0.41 1.42 16 14 C 0.07 1.72 5.41 -17.34 -0.09 1.63 16 15 N -0.82 -20.30 10.61 55.54 0.59 -19.71 16 16 Si 0.91 18.55 29.56 -169.99 -5.03 13.53 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 20 C -0.17 -3.89 9.72 -39.23 -0.38 -4.27 16 21 C -0.18 -3.82 8.95 -39.90 -0.36 -4.18 16 22 C 0.03 0.71 6.62 -38.41 -0.25 0.46 16 23 O -0.32 -6.11 8.80 -18.43 -0.16 -6.27 16 24 C 0.04 0.52 9.80 101.05 0.99 1.51 16 25 C -0.20 -3.90 9.34 -39.06 -0.36 -4.26 16 26 C 0.29 5.02 6.76 -83.63 -0.57 4.45 16 27 N -0.86 -13.04 8.93 32.54 0.29 -12.75 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.13 1.72 7.61 -52.48 -0.40 1.32 16 32 H 0.13 2.17 7.66 -52.48 -0.40 1.77 16 33 H 0.14 3.64 6.13 -52.49 -0.32 3.32 16 34 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 35 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.10 1.81 6.26 -52.49 -0.33 1.48 16 37 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 38 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.14 2.70 8.03 -52.49 -0.42 2.27 16 41 H 0.40 5.20 8.84 -40.82 -0.36 4.84 16 42 H 0.41 6.25 5.33 -40.97 -0.22 6.03 16 LS Contribution 356.95 15.07 5.38 5.38 Total: -1.00 -28.15 356.95 -7.89 -36.04 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -4.91 Total: 16.43 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -3.40 Total: -18.35 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.88 Total: -32.46 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.82 Total: -20.56 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.15 -7.89 -36.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245902978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.870 kcal (2) G-P(sol) polarization free energy of solvation -28.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds