Wall clock time and date at job start Tue Mar 31 2020 14:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34793 * 116.99751 * 2 1 4 4 O 1.21555 * 119.99983 * 359.97438 * 3 2 1 5 5 C 1.47137 * 120.00291 * 179.97438 * 3 2 1 6 6 C 1.39927 * 120.08900 * 6.28399 * 5 3 2 7 7 C 1.36426 * 120.17378 * 179.70038 * 6 5 3 8 8 C 1.39771 * 120.36755 * 0.27921 * 7 6 5 9 9 C 1.48204 * 119.90980 * 179.97438 * 8 7 6 10 10 C 1.38696 * 120.10351 * 129.72470 * 9 8 7 11 11 C 1.40593 * 119.55953 * 179.72705 * 10 9 8 12 12 C 1.41253 * 120.10890 * 180.26859 * 11 10 9 13 13 H 1.07996 * 119.99872 * 214.71429 * 12 11 10 14 14 C 1.39867 * 120.00131 * 34.72586 * 12 11 10 15 15 N 1.30893 * 120.00060 * 356.25941 * 14 12 11 16 16 Si 1.86800 * 120.00160 * 176.26394 * 14 12 11 17 17 H 1.48504 * 109.46966 * 89.99605 * 16 14 12 18 18 H 1.48493 * 109.47252 * 209.99529 * 16 14 12 19 19 H 1.48500 * 109.46900 * 329.99857 * 16 14 12 20 20 C 1.40925 * 119.77268 * 0.57219 * 11 10 9 21 21 C 1.36392 * 120.20668 * 359.68028 * 20 11 10 22 22 C 1.39161 * 120.44748 * 0.04698 * 21 20 11 23 23 O 1.35579 * 119.88852 * 179.97438 * 22 21 20 24 24 C 1.42901 * 116.99878 * 0.02562 * 23 22 21 25 25 C 1.39182 * 120.18068 * 0.02562 * 8 7 6 26 26 C 1.38695 * 119.81743 * 359.97438 * 25 8 7 27 27 N 1.38880 * 120.17472 * 179.97438 * 26 25 8 28 28 H 1.09000 * 109.47822 * 300.00005 * 1 2 3 29 29 H 1.09001 * 109.47266 * 60.00428 * 1 2 3 30 30 H 1.09007 * 109.46797 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.91083 * 359.97438 * 6 5 3 32 32 H 1.08010 * 119.81479 * 180.29532 * 7 6 5 33 33 H 1.07998 * 120.21871 * 0.02562 * 10 9 8 34 34 H 0.96994 * 120.00359 * 180.02562 * 15 14 12 35 35 H 1.07994 * 119.89242 * 179.70647 * 20 11 10 36 36 H 1.07996 * 119.77584 * 180.02562 * 21 20 11 37 37 H 1.09001 * 109.46692 * 299.99659 * 24 23 22 38 38 H 1.08996 * 109.47304 * 60.00437 * 24 23 22 39 39 H 1.09001 * 109.46744 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.09203 * 179.97438 * 25 8 7 41 41 H 0.96998 * 120.00449 * 354.37432 * 27 26 25 42 42 H 0.97002 * 119.99626 * 174.36552 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4018 2.2205 -0.0005 5 6 3.5332 1.2782 0.0006 6 6 4.2969 0.1132 -0.1314 7 6 5.6594 0.1833 -0.1372 8 6 6.3039 1.4166 -0.0058 9 6 7.7846 1.4810 -0.0129 10 6 8.4380 2.3750 -0.8481 11 6 9.8428 2.4305 -0.8413 12 6 10.5200 3.3406 -1.6830 13 1 11.4695 3.0683 -2.1196 14 6 9.9609 4.5943 -1.9509 15 7 8.7770 4.8968 -1.4817 16 14 10.9038 5.8372 -2.9784 17 1 10.5626 5.6548 -4.4121 18 1 10.5361 7.2117 -2.5531 19 1 12.3622 5.6332 -2.7868 20 6 10.5731 1.5707 0.0033 21 6 9.9210 0.6915 0.8170 22 6 8.5307 0.6330 0.8217 23 8 7.8942 -0.2456 1.6347 24 6 8.7133 -1.0782 2.4581 25 6 5.5591 2.5841 0.1327 26 6 4.1736 2.5216 0.1396 27 7 3.4231 3.6819 0.2780 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.8064 -0.8437 -0.2334 32 1 6.2431 -0.7191 -0.2442 33 1 7.8713 3.0274 -1.4957 34 1 8.3891 5.7661 -1.6678 35 1 11.6523 1.6085 0.0066 36 1 10.4876 0.0361 1.4618 37 1 9.3663 -1.6822 1.8281 38 1 9.3183 -0.4552 3.1167 39 1 8.0799 -1.7326 3.0570 40 1 6.0587 3.5362 0.2346 41 1 3.8651 4.5276 0.4517 42 1 2.4568 3.6466 0.2007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245902978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:02 Heat of formation + Delta-G solvation = -89.555858 kcal Electronic energy + Delta-G solvation = -27076.933600 eV Core-core repulsion = 23179.382690 eV Total energy + Delta-G solvation = -3897.550910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.71856 -40.74311 -39.60069 -38.05838 -37.54422 -35.59417 -35.00931 -33.48539 -30.93257 -30.53339 -29.87361 -28.31142 -28.20085 -26.43066 -25.10074 -23.33573 -22.51932 -22.30672 -21.56479 -19.21481 -18.87364 -18.49799 -18.04278 -17.68025 -17.39009 -17.30372 -16.96123 -16.29500 -16.23572 -15.72415 -15.29047 -14.97579 -14.86590 -14.61788 -14.55290 -14.22613 -14.18602 -13.73939 -13.58455 -13.42155 -13.23306 -12.90052 -12.82422 -12.69523 -12.43594 -12.34429 -12.18482 -11.80158 -11.73491 -11.60333 -11.49943 -11.46981 -11.10166 -10.89429 -10.11154 -9.19587 -8.70485 -8.56236 -8.41948 -6.24768 -0.28787 0.72870 0.89270 1.05439 1.41730 1.47932 1.54017 1.62955 1.78066 2.27124 2.76734 2.80313 2.93698 3.01836 3.63842 3.75347 3.96660 3.99828 4.32391 4.33817 4.37359 4.44412 4.49003 4.55122 4.55642 4.64255 4.70941 4.79251 4.84216 5.01200 5.08647 5.14729 5.25266 5.27196 5.34512 5.43719 5.54347 5.63573 5.78972 5.87614 5.94348 6.13004 6.32039 6.44687 6.61813 6.72129 6.83906 7.00229 7.03234 7.10396 8.49694 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011974 B = 0.003783 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.773126 B = 7398.814242 C = 9344.830119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.527 3.473 4 O -0.547 6.547 5 C -0.251 4.251 6 C -0.007 4.007 7 C -0.173 4.173 8 C 0.066 3.934 9 C -0.097 4.097 10 C -0.113 4.113 11 C 0.043 3.957 12 C -0.499 4.499 13 H 0.072 0.928 14 C 0.029 3.971 15 N -0.845 5.845 16 Si 0.981 3.019 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.261 1.261 20 C -0.179 4.179 21 C -0.181 4.181 22 C 0.042 3.958 23 O -0.329 6.329 24 C 0.025 3.975 25 C -0.215 4.215 26 C 0.284 3.716 27 N -0.852 5.852 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.134 0.866 31 H 0.159 0.841 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.281 0.719 35 H 0.108 0.892 36 H 0.134 0.866 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.403 0.597 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.818 -8.729 4.416 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.378 3.622 4 O -0.441 6.441 5 C -0.258 4.258 6 C -0.025 4.025 7 C -0.193 4.193 8 C 0.065 3.935 9 C -0.098 4.098 10 C -0.132 4.132 11 C 0.041 3.959 12 C -0.531 4.531 13 H 0.090 0.910 14 C -0.182 4.182 15 N -0.473 5.473 16 Si 0.803 3.197 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.185 1.185 20 C -0.199 4.199 21 C -0.200 4.200 22 C -0.003 4.003 23 O -0.244 6.244 24 C -0.070 4.070 25 C -0.238 4.238 26 C 0.172 3.828 27 N -0.399 5.399 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.177 0.823 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.152 0.848 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.232 0.768 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -11.497 -8.329 4.444 14.876 hybrid contribution 0.641 1.356 -0.301 1.530 sum -10.855 -6.973 4.143 13.551 Atomic orbital electron populations 1.23586 0.74371 1.05857 1.02594 1.86561 1.25162 1.31259 1.84030 1.20936 0.88492 0.81488 0.71300 1.90435 1.67027 1.36180 1.50424 1.18513 0.89074 0.93815 1.24358 1.20957 0.92794 0.97406 0.91337 1.20703 0.94364 0.96827 1.07432 1.18923 0.91696 0.93277 0.89644 1.18278 0.91343 0.99417 1.00750 1.21507 0.94855 0.97121 0.99761 1.17874 0.92206 0.92764 0.93069 1.19597 1.06271 0.99593 1.27608 0.90968 1.26585 0.95508 1.00682 0.95431 1.69811 1.15779 1.22817 1.38940 0.85207 0.79192 0.76842 0.78452 1.19108 1.19772 1.18520 1.21012 0.98902 1.00854 0.99089 1.20696 0.92675 1.02983 1.03598 1.18718 0.90434 0.94627 0.96483 1.85904 1.36066 1.49255 1.53190 1.23132 0.96664 0.93530 0.93705 1.20680 0.91202 0.98913 1.12979 1.17617 0.90214 0.86625 0.88360 1.43305 1.11537 1.06979 1.78056 0.91849 0.91892 0.84767 0.82342 0.85169 0.86234 0.90868 0.87397 0.84816 0.92590 0.93316 0.86570 0.86367 0.76823 0.74566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.57 113.37 1.20 1.66 16 2 O -0.35 -8.48 9.82 -57.05 -0.56 -9.04 16 3 C 0.53 15.58 7.86 70.16 0.55 16.13 16 4 O -0.55 -17.15 13.43 19.66 0.26 -16.89 16 5 C -0.25 -8.12 5.89 -19.97 -0.12 -8.23 16 6 C -0.01 -0.20 9.54 22.26 0.21 0.01 16 7 C -0.17 -6.07 8.69 22.22 0.19 -5.88 16 8 C 0.07 2.71 5.27 -20.03 -0.11 2.60 16 9 C -0.10 -4.50 5.47 -19.98 -0.11 -4.60 16 10 C -0.11 -5.85 8.10 22.95 0.19 -5.66 16 11 C 0.04 2.25 5.55 -21.31 -0.12 2.14 16 12 C -0.50 -26.63 9.03 23.41 0.21 -26.42 16 13 H 0.07 3.71 7.85 -2.91 -0.02 3.69 16 14 C 0.03 1.46 5.41 85.23 0.46 1.93 16 15 N -0.84 -44.12 10.61 21.82 0.23 -43.89 16 16 Si 0.98 39.08 29.56 68.60 2.03 41.11 16 17 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 18 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 20 C -0.18 -8.39 9.72 22.50 0.22 -8.17 16 21 C -0.18 -7.49 8.95 22.06 0.20 -7.29 16 22 C 0.04 1.79 6.62 23.03 0.15 1.94 16 23 O -0.33 -11.94 8.80 -88.87 -0.78 -12.72 16 24 C 0.02 0.63 9.80 113.37 1.11 1.74 16 25 C -0.22 -8.55 9.34 22.61 0.21 -8.34 16 26 C 0.28 9.90 6.76 38.70 0.26 10.16 16 27 N -0.85 -25.72 8.93 -50.97 -0.46 -26.18 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.16 3.74 7.61 -2.91 -0.02 3.72 16 32 H 0.13 4.35 7.66 -2.91 -0.02 4.33 16 33 H 0.12 6.63 6.13 -2.91 -0.02 6.61 16 34 H 0.28 13.51 8.30 -92.71 -0.77 12.74 16 35 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 36 H 0.13 4.52 6.26 -2.91 -0.02 4.50 16 37 H 0.06 1.31 7.65 -2.39 -0.02 1.29 16 38 H 0.05 1.20 7.65 -2.39 -0.02 1.19 16 39 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.12 5.03 8.03 -2.91 -0.02 5.01 16 41 H 0.40 10.78 8.84 -92.71 -0.82 9.96 16 42 H 0.41 12.27 5.33 -95.07 -0.51 11.76 16 Total: -1.00 -63.14 356.95 5.20 -57.93 By element: Atomic # 1 Polarization: 46.20 SS G_CDS: -0.24 Total: 45.96 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 4.72 Total: -36.29 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -0.22 Total: -70.06 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.08 Total: -38.64 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -63.14 5.20 -57.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245902978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.623 kcal (2) G-P(sol) polarization free energy of solvation -63.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds