Wall clock time and date at job start Tue Mar 31 2020 14:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34797 * 117.00091 * 2 1 4 4 O 1.21539 * 119.99772 * 0.02562 * 3 2 1 5 5 C 1.47141 * 119.99914 * 179.97438 * 3 2 1 6 6 C 1.39925 * 120.09272 * 6.11975 * 5 3 2 7 7 C 1.36433 * 120.17095 * 179.97438 * 6 5 3 8 8 C 1.39758 * 120.36909 * 359.97438 * 7 6 5 9 9 C 1.48243 * 119.90784 * 179.97438 * 8 7 6 10 10 C 1.39996 * 119.92528 * 174.23084 * 9 8 7 11 11 C 1.37990 * 120.46701 * 179.97438 * 10 9 8 12 12 C 1.38543 * 120.31673 * 359.97438 * 11 10 9 13 13 O 1.35580 * 120.07815 * 180.02562 * 12 11 10 14 14 C 1.42901 * 116.99793 * 359.97438 * 13 12 11 15 15 C 1.41393 * 119.84601 * 359.97438 * 12 11 10 16 16 C 1.41194 * 120.22983 * 180.02562 * 15 12 11 17 17 H 1.08004 * 119.99710 * 328.35179 * 16 15 12 18 18 C 1.39907 * 119.99949 * 148.34999 * 16 15 12 19 19 N 1.30877 * 119.99987 * 166.49145 * 18 16 15 20 20 Si 1.86798 * 120.00501 * 346.49616 * 18 16 15 21 21 H 1.48499 * 109.47616 * 89.49566 * 20 18 16 22 22 H 1.48497 * 109.47407 * 209.50022 * 20 18 16 23 23 H 1.48500 * 109.46872 * 329.49783 * 20 18 16 24 24 C 1.38708 * 119.92755 * 354.20169 * 9 8 7 25 25 C 1.39176 * 120.18076 * 0.27778 * 8 7 6 26 26 C 1.38687 * 119.82037 * 359.48974 * 25 8 7 27 27 N 1.38884 * 120.17898 * 180.27314 * 26 25 8 28 28 H 1.08999 * 109.47338 * 59.99718 * 1 2 3 29 29 H 1.09006 * 109.47035 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47319 * 299.99558 * 1 2 3 31 31 H 1.07991 * 119.91181 * 359.95440 * 6 5 3 32 32 H 1.08004 * 119.81446 * 179.97438 * 7 6 5 33 33 H 1.07991 * 119.76463 * 359.97438 * 10 9 8 34 34 H 1.07995 * 119.83826 * 180.27030 * 11 10 9 35 35 H 1.08997 * 109.47471 * 300.00543 * 14 13 12 36 36 H 1.09005 * 109.47078 * 60.00530 * 14 13 12 37 37 H 1.08994 * 109.46955 * 180.02562 * 14 13 12 38 38 H 0.96995 * 120.00606 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.15963 * 0.04888 * 24 9 8 40 40 H 1.08000 * 120.08460 * 179.73931 * 25 8 7 41 41 H 0.97000 * 119.99910 * 203.51780 * 27 26 25 42 42 H 0.96998 * 120.00088 * 23.52040 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4020 2.2203 0.0005 5 6 3.5334 1.2780 0.0006 6 6 4.2970 0.1126 -0.1280 7 6 5.6596 0.1821 -0.1281 8 6 6.3041 1.4157 -0.0008 9 6 7.7852 1.4793 -0.0017 10 6 8.4308 2.7215 0.0040 11 6 9.8088 2.7938 0.0037 12 6 10.5699 1.6361 -0.0016 13 8 11.9235 1.7128 -0.0013 14 6 12.4992 3.0207 0.0041 15 6 9.9316 0.3745 -0.0062 16 6 10.6993 -0.8105 -0.0111 17 1 11.6610 -0.8289 -0.5023 18 6 10.2142 -1.9609 0.6204 19 7 10.7832 -3.1184 0.3986 20 14 8.7545 -1.8447 1.7802 21 1 7.4963 -2.0241 1.0120 22 1 8.8583 -2.9052 2.8145 23 1 8.7482 -0.5125 2.4361 24 6 8.5282 0.3081 -0.0075 25 6 5.5594 2.5837 0.1332 26 6 4.1738 2.5224 0.1295 27 7 3.4233 3.6840 0.2571 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 3.8066 -0.8444 -0.2269 32 1 6.2434 -0.7211 -0.2273 33 1 7.8463 3.6295 0.0085 34 1 10.2964 3.7574 0.0125 35 1 12.1752 3.5640 -0.8835 36 1 12.1753 3.5566 0.8964 37 1 13.5861 2.9393 0.0033 38 1 10.4467 -3.9161 0.8361 39 1 8.0304 -0.6503 -0.0122 40 1 6.0591 3.5356 0.2358 41 1 2.5138 3.6395 0.5913 42 1 3.8085 4.5398 0.0118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245904107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:24 Heat of formation + Delta-G solvation = -88.557370 kcal Electronic energy + Delta-G solvation = -26878.231120 eV Core-core repulsion = 22980.723508 eV Total energy + Delta-G solvation = -3897.507612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.72450 -40.80220 -39.91023 -38.13237 -37.42380 -35.71189 -35.26503 -33.29333 -32.31219 -30.35056 -29.81760 -28.40961 -27.97360 -26.85030 -24.93576 -23.85876 -22.71802 -22.24047 -21.31464 -19.39706 -19.16916 -18.57222 -18.07442 -17.81642 -17.61677 -17.19603 -16.86977 -16.45986 -16.32450 -16.04303 -15.42257 -15.25533 -14.93891 -14.79243 -14.58867 -14.49484 -14.05735 -14.01786 -13.72828 -13.58905 -13.33900 -12.98766 -12.84674 -12.75804 -12.53255 -12.33642 -12.19741 -11.98597 -11.79273 -11.65481 -11.53306 -11.37645 -11.23295 -10.94695 -10.16868 -9.58297 -8.81605 -8.75440 -8.54135 -6.37737 -0.52097 0.58287 0.74210 0.80898 1.26155 1.35704 1.48535 1.65682 1.77674 2.12993 2.57455 2.79974 2.91232 2.94916 3.49324 3.69260 3.81360 3.94466 4.18449 4.28222 4.30823 4.32932 4.35317 4.43265 4.50654 4.51293 4.54652 4.69946 4.73406 4.77217 4.92659 5.00440 5.01427 5.18104 5.23270 5.29859 5.36782 5.50576 5.63950 5.67389 5.83523 6.00410 6.17301 6.28477 6.46477 6.49012 6.73088 6.82674 6.97294 7.05521 8.28482 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.003629 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.812116 B = 7714.100091 C = 9391.493496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.522 3.478 4 O -0.539 6.539 5 C -0.242 4.242 6 C -0.009 4.009 7 C -0.205 4.205 8 C 0.050 3.950 9 C -0.073 4.073 10 C -0.154 4.154 11 C -0.177 4.177 12 C 0.038 3.962 13 O -0.339 6.339 14 C 0.021 3.979 15 C 0.043 3.957 16 C -0.468 4.468 17 H 0.052 0.948 18 C 0.046 3.954 19 N -0.860 5.860 20 Si 0.952 3.048 21 H -0.243 1.243 22 H -0.281 1.281 23 H -0.257 1.257 24 C -0.200 4.200 25 C -0.201 4.201 26 C 0.285 3.715 27 N -0.851 5.851 28 H 0.063 0.937 29 H 0.130 0.870 30 H 0.065 0.935 31 H 0.149 0.851 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.291 0.709 39 H 0.112 0.888 40 H 0.155 0.845 41 H 0.410 0.590 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.980 11.242 1.009 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.372 3.628 4 O -0.432 6.432 5 C -0.248 4.248 6 C -0.028 4.028 7 C -0.224 4.224 8 C 0.049 3.951 9 C -0.073 4.073 10 C -0.172 4.172 11 C -0.195 4.195 12 C -0.007 4.007 13 O -0.253 6.253 14 C -0.073 4.073 15 C 0.040 3.960 16 C -0.499 4.499 17 H 0.070 0.930 18 C -0.166 4.166 19 N -0.488 5.488 20 Si 0.776 3.224 21 H -0.168 1.168 22 H -0.208 1.208 23 H -0.182 1.182 24 C -0.219 4.219 25 C -0.223 4.223 26 C 0.174 3.826 27 N -0.396 5.396 28 H 0.082 0.918 29 H 0.148 0.852 30 H 0.083 0.917 31 H 0.167 0.833 32 H 0.135 0.865 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.172 0.828 41 H 0.247 0.753 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -16.035 11.066 1.030 19.510 hybrid contribution -0.158 -0.098 0.288 0.343 sum -16.193 10.968 1.319 19.602 Atomic orbital electron populations 1.23558 0.74384 1.05687 1.02668 1.86575 1.25196 1.31889 1.84082 1.20962 0.88669 0.81472 0.71724 1.90579 1.67123 1.36053 1.49423 1.18725 0.89047 0.94552 1.22507 1.20922 0.92714 0.97855 0.91295 1.20912 0.94954 0.97705 1.08863 1.19026 0.91773 0.93415 0.90882 1.18608 0.91151 0.93643 1.03908 1.20834 0.93377 0.96372 1.06650 1.21084 0.94798 0.96598 1.07063 1.19601 0.82304 0.94167 1.04652 1.85992 1.18350 1.31687 1.89269 1.23206 0.99587 0.82849 1.01705 1.17296 0.91975 0.91333 0.95391 1.19157 1.04625 0.93878 1.32228 0.92967 1.26697 0.99304 0.93636 0.96999 1.69711 1.40860 1.00136 1.38107 0.85745 0.79082 0.78869 0.78694 1.16788 1.20769 1.18156 1.21116 0.92374 0.97602 1.10799 1.20863 0.90879 0.99167 1.11430 1.17552 0.90445 0.86382 0.88218 1.42815 1.18504 1.05845 1.72437 0.91791 0.85230 0.91662 0.83289 0.86494 0.83721 0.83720 0.92114 0.92100 0.87378 0.89868 0.87069 0.82793 0.75316 0.75982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.57 113.37 1.20 1.65 16 2 O -0.36 -8.24 9.82 -57.09 -0.56 -8.80 16 3 C 0.52 13.77 7.86 70.16 0.55 14.32 16 4 O -0.54 -14.71 13.58 19.71 0.27 -14.44 16 5 C -0.24 -6.76 5.89 -19.97 -0.12 -6.87 16 6 C -0.01 -0.27 9.54 22.26 0.21 -0.06 16 7 C -0.20 -6.92 9.34 22.22 0.21 -6.71 16 8 C 0.05 1.72 5.87 -20.02 -0.12 1.61 16 9 C -0.07 -2.89 5.86 -20.08 -0.12 -3.01 16 10 C -0.15 -5.37 9.41 22.64 0.21 -5.16 16 11 C -0.18 -6.49 9.01 22.28 0.20 -6.29 16 12 C 0.04 1.74 6.72 23.12 0.16 1.90 16 13 O -0.34 -14.90 9.85 -88.88 -0.88 -15.78 16 14 C 0.02 0.61 9.81 113.37 1.11 1.72 16 15 C 0.04 2.20 5.11 -21.23 -0.11 2.10 16 16 C -0.47 -27.22 9.19 23.40 0.22 -27.00 16 17 H 0.05 3.34 7.93 -2.91 -0.02 3.32 16 18 C 0.05 2.54 5.45 85.24 0.46 3.01 16 19 N -0.86 -48.83 13.93 21.82 0.30 -48.52 16 20 Si 0.95 43.64 24.47 68.60 1.68 45.32 16 21 H -0.24 -10.15 5.86 99.48 0.58 -9.57 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.26 -12.12 6.92 99.48 0.69 -11.43 16 24 C -0.20 -9.33 6.50 22.93 0.15 -9.18 16 25 C -0.20 -5.59 9.29 22.60 0.21 -5.38 16 26 C 0.28 7.49 6.76 38.70 0.26 7.75 16 27 N -0.85 -17.60 8.51 -50.97 -0.43 -18.03 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.15 3.66 7.61 -2.92 -0.02 3.64 16 32 H 0.12 4.24 5.56 -2.91 -0.02 4.22 16 33 H 0.15 3.85 6.20 -2.92 -0.02 3.83 16 34 H 0.15 4.15 6.27 -2.91 -0.02 4.13 16 35 H 0.06 1.53 7.66 -2.39 -0.02 1.51 16 36 H 0.06 1.54 7.65 -2.38 -0.02 1.52 16 37 H 0.11 2.58 8.14 -2.39 -0.02 2.57 16 38 H 0.29 14.89 8.30 -92.71 -0.77 14.12 16 39 H 0.11 5.22 2.70 -2.91 -0.01 5.21 16 40 H 0.15 3.49 6.20 -2.91 -0.02 3.48 16 41 H 0.41 8.88 6.05 -92.71 -0.56 8.32 16 42 H 0.41 6.18 8.90 -92.71 -0.83 5.36 16 Total: -1.00 -68.86 345.79 4.65 -64.21 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.41 Total: 31.66 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 4.69 Total: -35.62 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -0.13 Total: -66.55 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -1.17 Total: -39.02 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.68 Total: 45.32 kcal Total: -68.86 4.65 -64.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245904107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.348 kcal (2) G-P(sol) polarization free energy of solvation -68.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds