Wall clock time and date at job start Tue Mar 31 2020 14:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34705 * 116.99823 * 2 1 4 4 O 1.21466 * 120.00449 * 0.02562 * 3 2 1 5 5 C 1.47760 * 119.99609 * 180.02562 * 3 2 1 6 6 C 1.39547 * 120.08377 * 179.97438 * 5 3 2 7 7 C 1.38680 * 119.87648 * 180.02562 * 6 5 3 8 8 N 1.39739 * 119.97284 * 179.97438 * 7 6 5 9 9 C 1.39727 * 119.99831 * 150.99274 * 8 7 6 10 10 C 1.39352 * 119.95369 * 329.62986 * 9 8 7 11 11 C 1.38471 * 120.41755 * 179.72371 * 10 9 8 12 12 C 1.37688 * 120.32986 * 0.55021 * 11 10 9 13 13 C 1.40749 * 119.89582 * 359.72777 * 12 11 10 14 14 C 1.41414 * 120.20744 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99768 * 149.01751 * 14 13 12 16 16 C 1.39926 * 119.99673 * 329.02155 * 14 13 12 17 17 N 1.30835 * 119.99610 * 155.84649 * 16 14 13 18 18 Si 1.86799 * 120.00161 * 335.83950 * 16 14 13 19 19 H 1.48502 * 109.47018 * 88.53393 * 18 16 14 20 20 H 1.48505 * 109.46886 * 208.53193 * 18 16 14 21 21 H 1.48497 * 109.47142 * 328.53253 * 18 16 14 22 22 C 1.38296 * 119.95332 * 149.90242 * 9 8 7 23 23 C 1.38951 * 120.05807 * 0.02562 * 7 6 5 24 24 C 1.38675 * 120.17932 * 359.95455 * 23 7 6 25 25 O 1.35905 * 119.94325 * 180.02562 * 24 23 7 26 26 C 1.42897 * 117.00174 * 180.02562 * 25 24 23 27 27 C 1.38548 * 120.11661 * 0.04586 * 24 23 7 28 28 H 1.09002 * 109.47352 * 59.99548 * 1 2 3 29 29 H 1.09004 * 109.46991 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47088 * 299.99934 * 1 2 3 31 31 H 1.07999 * 120.06327 * 359.97438 * 6 5 3 32 32 H 0.97003 * 120.00352 * 330.99952 * 8 7 6 33 33 H 1.07997 * 119.78578 * 359.97438 * 10 9 8 34 34 H 1.08004 * 119.82991 * 180.27817 * 11 10 9 35 35 H 1.08005 * 120.04861 * 179.74977 * 12 11 10 36 36 H 0.96999 * 120.00010 * 179.97438 * 17 16 14 37 37 H 1.08005 * 120.16066 * 359.97438 * 22 9 8 38 38 H 1.07999 * 119.91482 * 179.97438 * 23 7 6 39 39 H 1.09007 * 109.46693 * 299.99388 * 26 25 24 40 40 H 1.08992 * 109.47417 * 59.99247 * 26 25 24 41 41 H 1.09000 * 109.47360 * 180.02562 * 26 25 24 42 42 H 1.08001 * 120.02748 * 180.25514 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5391 1.2775 -0.0006 6 6 4.1745 2.5199 -0.0011 7 6 5.5597 2.5875 -0.0022 8 7 6.1980 3.8305 -0.0033 9 6 7.4590 3.9688 0.5825 10 6 7.8173 3.1627 1.6613 11 6 9.0665 3.2876 2.2454 12 6 9.9648 4.2184 1.7735 13 6 9.6149 5.0436 0.6884 14 6 10.5326 6.0013 0.1980 15 1 10.5271 6.2681 -0.8485 16 6 11.4478 6.6032 1.0688 17 7 12.5654 7.0987 0.6028 18 14 11.0737 6.6993 2.8964 19 1 11.5718 5.4725 3.5688 20 1 11.7456 7.8896 3.4772 21 1 9.6066 6.8123 3.0961 22 6 8.3477 4.9094 0.0945 23 6 6.3134 1.4201 -0.0033 24 6 5.6844 0.1842 -0.0023 25 8 6.4263 -0.9545 -0.0028 26 6 5.7137 -2.1931 -0.0024 27 6 4.3010 0.1082 -0.0012 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.5887 3.4272 -0.0015 32 1 5.7657 4.5975 -0.4106 33 1 7.1176 2.4331 2.0414 34 1 9.3359 2.6549 3.0782 35 1 10.9364 4.3147 2.2352 36 1 13.1996 7.5163 1.2063 37 1 8.0697 5.5375 -0.7390 38 1 7.3919 1.4754 -0.0045 39 1 5.0878 -2.2518 0.8882 40 1 5.0864 -2.2517 -0.8918 41 1 6.4232 -3.0205 -0.0024 42 1 3.8127 -0.8551 0.0037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248506283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:28 Heat of formation + Delta-G solvation = -68.828945 kcal Electronic energy + Delta-G solvation = -26455.266104 eV Core-core repulsion = 22558.613980 eV Total energy + Delta-G solvation = -3896.652124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.84486 -39.94553 -38.68657 -37.32938 -36.54966 -34.94190 -33.33479 -31.18352 -30.34081 -30.06061 -28.09384 -27.63588 -27.16850 -25.26654 -24.14755 -22.15209 -21.55754 -20.81356 -20.32928 -18.56821 -17.78289 -17.50650 -16.56981 -16.43166 -16.16650 -16.09149 -15.79695 -15.68409 -15.42397 -14.82163 -14.64207 -13.93887 -13.81844 -13.61996 -13.45863 -12.94247 -12.70733 -12.60072 -12.46118 -12.34180 -12.08228 -11.84445 -11.70815 -11.46217 -11.30855 -11.06372 -10.95378 -10.85771 -10.67891 -10.56957 -10.19388 -9.92193 -9.63622 -9.14269 -8.49046 -8.23025 -7.71053 -7.00438 -6.75651 -4.52110 0.64136 1.39898 2.40729 2.43692 2.57860 2.72158 3.12162 3.13672 3.19913 3.30675 3.75714 3.81923 3.97447 4.44843 4.46346 4.81051 4.89603 4.93266 4.99666 5.03428 5.14978 5.17983 5.26487 5.32233 5.35313 5.37455 5.63750 5.93409 6.06180 6.09448 6.20955 6.22419 6.33532 6.38449 6.54770 6.68195 6.78034 6.88384 7.19360 7.31423 7.43561 7.54443 7.54874 7.66133 7.87374 8.09315 8.19695 8.35720 8.63561 8.78870 10.02148 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019911 B = 0.002731 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.903808 B =10249.440940 C =11041.933153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.512 3.488 4 O -0.504 6.504 5 C -0.060 4.060 6 C -0.149 4.149 7 C 0.233 3.767 8 N -0.682 5.682 9 C 0.191 3.809 10 C -0.271 4.271 11 C -0.057 4.057 12 C -0.252 4.252 13 C 0.114 3.886 14 C -0.454 4.454 15 H 0.090 0.910 16 C 0.089 3.911 17 N -0.801 5.801 18 Si 0.909 3.091 19 H -0.264 1.264 20 H -0.290 1.290 21 H -0.250 1.250 22 C -0.243 4.243 23 C -0.159 4.159 24 C 0.147 3.853 25 O -0.311 6.311 26 C 0.027 3.973 27 C -0.201 4.201 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.137 0.863 32 H 0.407 0.593 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.285 0.715 37 H 0.102 0.898 38 H 0.148 0.852 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.013 -15.014 -0.203 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.357 3.643 4 O -0.392 6.392 5 C -0.062 4.062 6 C -0.171 4.171 7 C 0.131 3.869 8 N -0.304 5.304 9 C 0.097 3.903 10 C -0.293 4.293 11 C -0.076 4.076 12 C -0.272 4.272 13 C 0.110 3.890 14 C -0.482 4.482 15 H 0.108 0.892 16 C -0.131 4.131 17 N -0.425 5.425 18 Si 0.734 3.266 19 H -0.189 1.189 20 H -0.217 1.217 21 H -0.173 1.173 22 C -0.265 4.265 23 C -0.182 4.182 24 C 0.101 3.899 25 O -0.224 6.224 26 C -0.069 4.069 27 C -0.221 4.221 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.155 0.845 32 H 0.243 0.757 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.166 0.834 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.678 -14.624 -0.169 22.182 hybrid contribution -0.636 0.349 0.610 0.948 sum -17.314 -14.275 0.440 22.444 Atomic orbital electron populations 1.23281 0.76075 1.03701 1.02704 1.86545 1.23461 1.32778 1.84404 1.21253 0.89157 0.81311 0.72551 1.90831 1.66782 1.36018 1.45602 1.18380 0.88128 0.93858 1.05840 1.20726 0.92691 0.97139 1.06560 1.17151 0.89944 0.86022 0.93772 1.42184 1.18501 1.07758 1.61918 1.17493 0.83447 0.97036 0.92360 1.20194 0.99015 1.08200 1.01876 1.20445 0.93157 0.96644 0.97307 1.21171 1.00087 1.01576 1.04346 1.17461 0.90380 0.91110 0.90035 1.19408 1.11330 1.19560 0.97878 0.89178 1.26134 0.92404 0.92658 1.01865 1.69757 1.05654 1.27855 1.39195 0.86394 0.81160 0.77467 0.81561 1.18948 1.21666 1.17327 1.20685 0.93906 1.05681 1.06273 1.20522 1.01908 0.88342 1.07417 1.18515 0.89101 0.86427 0.95848 1.86125 1.35011 1.12661 1.88652 1.23068 0.98276 0.84091 1.01416 1.21210 0.92494 0.98691 1.09746 0.91798 0.88003 0.91783 0.84485 0.75687 0.88379 0.88548 0.87870 0.90414 0.87957 0.83394 0.92581 0.92584 0.88264 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.80 9.81 -40.51 -0.40 -4.20 16 3 C 0.51 6.73 7.90 34.62 0.27 7.00 16 4 O -0.50 -7.67 16.13 -19.24 -0.31 -7.98 16 5 C -0.06 -0.81 5.87 -105.02 -0.62 -1.42 16 6 C -0.15 -2.12 9.49 -38.93 -0.37 -2.49 16 7 C 0.23 3.63 5.94 -83.83 -0.50 3.13 16 8 N -0.68 -11.33 5.45 -8.50 -0.05 -11.38 16 9 C 0.19 3.85 5.91 -83.82 -0.50 3.35 16 10 C -0.27 -5.52 7.87 -39.08 -0.31 -5.83 16 11 C -0.06 -1.20 10.01 -39.70 -0.40 -1.60 16 12 C -0.25 -5.96 7.43 -38.83 -0.29 -6.25 16 13 C 0.11 2.82 5.02 -106.85 -0.54 2.28 16 14 C -0.45 -12.03 9.51 -37.74 -0.36 -12.39 16 15 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 16 C 0.09 2.30 5.30 -17.34 -0.09 2.21 16 17 N -0.80 -20.98 13.93 55.55 0.77 -20.21 16 18 Si 0.91 20.44 25.12 -169.99 -4.27 16.17 16 19 H -0.26 -5.77 6.40 56.52 0.36 -5.41 16 20 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.25 -5.78 7.11 56.52 0.40 -5.37 16 22 C -0.24 -5.46 9.69 -38.67 -0.37 -5.83 16 23 C -0.16 -2.51 7.82 -39.16 -0.31 -2.82 16 24 C 0.15 2.04 6.68 -39.31 -0.26 1.77 16 25 O -0.31 -4.02 10.49 -19.44 -0.20 -4.22 16 26 C 0.03 0.22 9.81 101.05 0.99 1.21 16 27 C -0.20 -2.48 8.60 -38.97 -0.34 -2.81 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.14 1.88 7.64 -52.49 -0.40 1.47 16 32 H 0.41 5.88 8.90 -40.82 -0.36 5.52 16 33 H 0.10 1.87 6.59 -52.49 -0.35 1.53 16 34 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 35 H 0.10 2.45 5.14 -52.48 -0.27 2.18 16 36 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 37 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 38 H 0.15 2.60 6.53 -52.49 -0.34 2.25 16 39 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 40 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.14 1.38 5.82 -52.49 -0.31 1.08 16 LS Contribution 355.92 15.07 5.36 5.36 Total: -1.00 -29.36 355.92 -6.95 -36.32 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -4.96 Total: 9.29 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -2.91 Total: -19.16 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.73 Total: -31.59 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.91 Total: -16.40 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.27 Total: 16.17 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.36 -6.95 -36.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248506283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.511 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds