Wall clock time and date at job start Tue Mar 31 2020 14:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34705 * 116.99823 * 2 1 4 4 O 1.21466 * 120.00449 * 0.02562 * 3 2 1 5 5 C 1.47760 * 119.99609 * 180.02562 * 3 2 1 6 6 C 1.39547 * 120.08377 * 179.97438 * 5 3 2 7 7 C 1.38680 * 119.87648 * 180.02562 * 6 5 3 8 8 N 1.39739 * 119.97284 * 179.97438 * 7 6 5 9 9 C 1.39727 * 119.99831 * 150.99274 * 8 7 6 10 10 C 1.39352 * 119.95369 * 329.62986 * 9 8 7 11 11 C 1.38471 * 120.41755 * 179.72371 * 10 9 8 12 12 C 1.37688 * 120.32986 * 0.55021 * 11 10 9 13 13 C 1.40749 * 119.89582 * 359.72777 * 12 11 10 14 14 C 1.41414 * 120.20744 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99768 * 149.01751 * 14 13 12 16 16 C 1.39926 * 119.99673 * 329.02155 * 14 13 12 17 17 N 1.30835 * 119.99610 * 155.84649 * 16 14 13 18 18 Si 1.86799 * 120.00161 * 335.83950 * 16 14 13 19 19 H 1.48502 * 109.47018 * 88.53393 * 18 16 14 20 20 H 1.48505 * 109.46886 * 208.53193 * 18 16 14 21 21 H 1.48497 * 109.47142 * 328.53253 * 18 16 14 22 22 C 1.38296 * 119.95332 * 149.90242 * 9 8 7 23 23 C 1.38951 * 120.05807 * 0.02562 * 7 6 5 24 24 C 1.38675 * 120.17932 * 359.95455 * 23 7 6 25 25 O 1.35905 * 119.94325 * 180.02562 * 24 23 7 26 26 C 1.42897 * 117.00174 * 180.02562 * 25 24 23 27 27 C 1.38548 * 120.11661 * 0.04586 * 24 23 7 28 28 H 1.09002 * 109.47352 * 59.99548 * 1 2 3 29 29 H 1.09004 * 109.46991 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47088 * 299.99934 * 1 2 3 31 31 H 1.07999 * 120.06327 * 359.97438 * 6 5 3 32 32 H 0.97003 * 120.00352 * 330.99952 * 8 7 6 33 33 H 1.07997 * 119.78578 * 359.97438 * 10 9 8 34 34 H 1.08004 * 119.82991 * 180.27817 * 11 10 9 35 35 H 1.08005 * 120.04861 * 179.74977 * 12 11 10 36 36 H 0.96999 * 120.00010 * 179.97438 * 17 16 14 37 37 H 1.08005 * 120.16066 * 359.97438 * 22 9 8 38 38 H 1.07999 * 119.91482 * 179.97438 * 23 7 6 39 39 H 1.09007 * 109.46693 * 299.99388 * 26 25 24 40 40 H 1.08992 * 109.47417 * 59.99247 * 26 25 24 41 41 H 1.09000 * 109.47360 * 180.02562 * 26 25 24 42 42 H 1.08001 * 120.02748 * 180.25514 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5391 1.2775 -0.0006 6 6 4.1745 2.5199 -0.0011 7 6 5.5597 2.5875 -0.0022 8 7 6.1980 3.8305 -0.0033 9 6 7.4590 3.9688 0.5825 10 6 7.8173 3.1627 1.6613 11 6 9.0665 3.2876 2.2454 12 6 9.9648 4.2184 1.7735 13 6 9.6149 5.0436 0.6884 14 6 10.5326 6.0013 0.1980 15 1 10.5271 6.2681 -0.8485 16 6 11.4478 6.6032 1.0688 17 7 12.5654 7.0987 0.6028 18 14 11.0737 6.6993 2.8964 19 1 11.5718 5.4725 3.5688 20 1 11.7456 7.8896 3.4772 21 1 9.6066 6.8123 3.0961 22 6 8.3477 4.9094 0.0945 23 6 6.3134 1.4201 -0.0033 24 6 5.6844 0.1842 -0.0023 25 8 6.4263 -0.9545 -0.0028 26 6 5.7137 -2.1931 -0.0024 27 6 4.3010 0.1082 -0.0012 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.5887 3.4272 -0.0015 32 1 5.7657 4.5975 -0.4106 33 1 7.1176 2.4331 2.0414 34 1 9.3359 2.6549 3.0782 35 1 10.9364 4.3147 2.2352 36 1 13.1996 7.5163 1.2063 37 1 8.0697 5.5375 -0.7390 38 1 7.3919 1.4754 -0.0045 39 1 5.0878 -2.2518 0.8882 40 1 5.0864 -2.2517 -0.8918 41 1 6.4232 -3.0205 -0.0024 42 1 3.8127 -0.8551 0.0037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248506283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:27 Heat of formation + Delta-G solvation = -85.519214 kcal Electronic energy + Delta-G solvation = -26455.989848 eV Core-core repulsion = 22558.613980 eV Total energy + Delta-G solvation = -3897.375868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.87334 -40.99582 -40.06208 -38.62219 -37.54101 -36.36933 -35.11335 -32.37264 -32.06815 -31.39081 -29.06762 -28.69440 -28.02972 -27.06549 -25.22920 -23.45358 -22.96211 -22.25233 -21.69288 -19.74659 -19.34430 -18.53847 -17.77369 -17.44789 -17.41402 -17.23187 -17.07314 -16.70079 -16.58324 -16.42685 -16.18394 -15.41133 -14.88805 -14.66675 -14.53550 -14.46533 -14.27877 -13.99064 -13.58244 -13.51835 -13.22233 -13.12808 -12.83008 -12.74527 -12.69715 -12.45731 -12.32482 -12.15040 -11.84328 -11.78963 -11.66997 -11.57230 -11.35419 -10.92953 -9.86133 -9.53604 -9.36434 -8.91423 -8.24903 -6.49505 -0.44975 0.24378 0.79489 0.96543 1.30525 1.42582 1.43756 1.52011 1.54520 2.15056 2.16738 2.52470 2.59462 2.71957 3.50278 3.52113 3.99697 4.06371 4.11666 4.18331 4.30722 4.33928 4.34791 4.39098 4.47932 4.48814 4.53507 4.71225 4.73506 4.81500 4.91945 4.97757 5.01266 5.11351 5.12690 5.16087 5.25181 5.37415 5.48880 5.73359 5.81874 5.93212 6.03448 6.34120 6.38598 6.57648 6.58600 6.69499 6.78508 6.90620 8.17227 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019911 B = 0.002731 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.903808 B =10249.440940 C =11041.933153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.517 3.483 4 O -0.529 6.529 5 C -0.064 4.064 6 C -0.147 4.147 7 C 0.220 3.780 8 N -0.680 5.680 9 C 0.205 3.795 10 C -0.258 4.258 11 C -0.056 4.056 12 C -0.269 4.269 13 C 0.098 3.902 14 C -0.492 4.492 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.842 5.842 18 Si 0.961 3.039 19 H -0.252 1.252 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.259 4.259 23 C -0.176 4.176 24 C 0.150 3.850 25 O -0.330 6.330 26 C 0.014 3.986 27 C -0.180 4.180 28 H 0.063 0.937 29 H 0.138 0.862 30 H 0.063 0.937 31 H 0.140 0.860 32 H 0.416 0.584 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.294 0.706 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.119 0.881 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.861 -18.203 1.238 26.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.363 3.637 4 O -0.420 6.420 5 C -0.066 4.066 6 C -0.169 4.169 7 C 0.119 3.881 8 N -0.304 5.304 9 C 0.109 3.891 10 C -0.279 4.279 11 C -0.074 4.074 12 C -0.289 4.289 13 C 0.095 3.905 14 C -0.521 4.521 15 H 0.074 0.926 16 C -0.160 4.160 17 N -0.468 5.468 18 Si 0.783 3.217 19 H -0.176 1.176 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.281 4.281 23 C -0.198 4.198 24 C 0.104 3.896 25 O -0.243 6.243 26 C -0.080 4.080 27 C -0.200 4.200 28 H 0.082 0.918 29 H 0.156 0.844 30 H 0.082 0.918 31 H 0.158 0.842 32 H 0.254 0.746 33 H 0.136 0.864 34 H 0.146 0.854 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.145 0.855 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.137 0.863 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -19.562 -17.862 1.254 26.520 hybrid contribution -0.066 0.993 0.070 0.997 sum -19.628 -16.869 1.324 25.915 Atomic orbital electron populations 1.23645 0.73976 1.06144 1.02745 1.86526 1.25416 1.31138 1.83664 1.21149 0.88909 0.81697 0.71993 1.90827 1.67246 1.37041 1.46913 1.18518 0.88768 0.93851 1.05436 1.20735 0.92024 0.97917 1.06273 1.17168 0.90405 0.85275 0.95205 1.42060 1.17329 1.08913 1.62061 1.17471 0.84279 0.95580 0.91750 1.20500 0.98940 1.07588 1.00871 1.20786 0.92813 0.95989 0.97860 1.21220 1.00660 1.02503 1.04520 1.17599 0.90896 0.91026 0.90992 1.19385 1.13822 1.22099 0.96786 0.92607 1.26768 0.91962 0.92067 1.05251 1.69777 1.06584 1.29667 1.40726 0.85601 0.80247 0.78430 0.77405 1.17631 1.20057 1.18439 1.20783 0.93921 1.06837 1.06575 1.20452 1.00927 0.89556 1.08877 1.18498 0.89604 0.86344 0.95172 1.86118 1.36266 1.13638 1.88327 1.23448 0.99254 0.82478 1.02787 1.21448 0.91735 0.99561 1.07240 0.91772 0.84382 0.91828 0.84207 0.74614 0.86449 0.85376 0.88311 0.89547 0.87911 0.85536 0.91144 0.91118 0.86283 0.81553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -6.27 9.81 -56.15 -0.55 -6.82 16 3 C 0.52 12.20 7.90 70.34 0.56 12.75 16 4 O -0.53 -15.13 16.13 19.95 0.32 -14.81 16 5 C -0.06 -1.54 5.87 -20.12 -0.12 -1.66 16 6 C -0.15 -3.94 9.49 22.69 0.22 -3.73 16 7 C 0.22 6.53 5.94 38.16 0.23 6.76 16 8 N -0.68 -22.10 5.45 -180.80 -0.99 -23.09 16 9 C 0.21 8.17 5.91 38.16 0.23 8.39 16 10 C -0.26 -10.03 7.87 22.59 0.18 -9.85 16 11 C -0.06 -2.28 10.01 22.20 0.22 -2.05 16 12 C -0.27 -12.72 7.43 22.75 0.17 -12.55 16 13 C 0.10 5.02 5.02 -21.31 -0.11 4.91 16 14 C -0.49 -27.69 9.51 23.46 0.22 -27.46 16 15 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 16 C 0.06 2.97 5.30 85.25 0.45 3.42 16 17 N -0.84 -46.09 13.93 21.82 0.30 -45.78 16 18 Si 0.96 42.69 25.12 68.60 1.72 44.41 16 19 H -0.25 -10.56 6.40 99.48 0.64 -9.93 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 22 C -0.26 -11.89 9.69 22.86 0.22 -11.67 16 23 C -0.18 -5.29 7.82 22.55 0.18 -5.11 16 24 C 0.15 3.78 6.68 22.45 0.15 3.93 16 25 O -0.33 -7.61 10.49 -92.48 -0.97 -8.58 16 26 C 0.01 0.18 9.81 113.37 1.11 1.29 16 27 C -0.18 -3.81 8.60 22.66 0.19 -3.62 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.14 3.64 7.64 -2.91 -0.02 3.61 16 32 H 0.42 11.84 8.90 -92.71 -0.82 11.01 16 33 H 0.12 4.16 6.59 -2.91 -0.02 4.14 16 34 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 35 H 0.10 4.69 5.14 -2.91 -0.01 4.68 16 36 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 37 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.13 4.36 6.53 -2.91 -0.02 4.34 16 39 H 0.07 0.69 7.65 -2.38 -0.02 0.68 16 40 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 41 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.17 2.53 5.82 -2.91 -0.02 2.52 16 Total: -1.00 -65.93 355.92 5.32 -60.62 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.18 Total: 28.80 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 5.29 Total: -34.75 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -0.68 Total: -68.87 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -1.20 Total: -30.21 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.72 Total: 44.41 kcal Total: -65.93 5.32 -60.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248506283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.902 kcal (2) G-P(sol) polarization free energy of solvation -65.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds