Wall clock time and date at job start Tue Mar 31 2020 15:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 110.54052 * 2 1 4 4 O 1.42098 * 110.54389 * 223.24830 * 2 1 3 5 5 C 1.76207 * 104.44764 * 111.62113 * 2 1 3 6 6 C 1.38233 * 119.99797 * 90.00113 * 5 2 1 7 7 C 1.38235 * 119.99732 * 180.02562 * 6 5 2 8 8 C 1.38236 * 120.00184 * 359.95438 * 7 6 5 9 9 C 1.50692 * 120.00110 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.46971 * 25.00637 * 9 8 7 11 11 O 1.42901 * 109.47282 * 145.00152 * 9 8 7 12 12 C 1.53004 * 109.47453 * 265.00483 * 9 8 7 13 13 N 1.46895 * 109.47035 * 180.02562 * 12 9 8 14 14 C 1.46906 * 110.99789 * 179.97438 * 13 12 9 15 15 C 1.53002 * 109.47053 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.46891 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46946 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00275 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99908 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99697 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99899 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47418 * 89.99714 * 21 19 17 23 23 H 1.48498 * 109.47091 * 209.99774 * 21 19 17 24 24 H 1.48498 * 109.46997 * 329.99585 * 21 19 17 25 25 C 1.38232 * 119.99588 * 0.27830 * 8 7 6 26 26 C 1.38232 * 119.99936 * 270.02358 * 5 2 1 27 27 H 1.08995 * 109.47934 * 308.37414 * 1 2 3 28 28 H 1.09002 * 109.47208 * 68.38214 * 1 2 3 29 29 H 1.09004 * 109.46936 * 188.37461 * 1 2 3 30 30 H 1.08001 * 119.99938 * 0.02562 * 6 5 2 31 31 H 1.08000 * 119.99649 * 179.97438 * 7 6 5 32 32 H 0.96706 * 113.99785 * 60.00022 * 11 9 8 33 33 H 1.08996 * 109.46863 * 59.99873 * 12 9 8 34 34 H 1.09002 * 109.46661 * 300.00050 * 12 9 8 35 35 H 1.00899 * 111.00672 * 56.04786 * 13 12 9 36 36 H 1.08992 * 109.47459 * 299.99826 * 14 13 12 37 37 H 1.09004 * 109.47040 * 59.99976 * 14 13 12 38 38 H 1.09001 * 109.47142 * 300.00160 * 15 14 13 39 39 H 1.09004 * 109.47006 * 60.00213 * 15 14 13 40 40 H 1.09001 * 109.47372 * 300.00036 * 16 15 14 41 41 H 1.09004 * 109.47108 * 60.00292 * 16 15 14 42 42 H 0.97007 * 119.99539 * 180.02562 * 20 19 17 43 43 H 1.08006 * 119.99683 * 179.72424 * 25 8 7 44 44 H 1.08003 * 120.00165 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2536 -0.6287 1.5863 6 6 2.4261 -1.9883 1.7674 7 6 2.7704 -2.4815 3.0119 8 6 2.9433 -1.6152 4.0752 9 6 3.3193 -2.1529 5.4318 10 1 3.8303 -3.1086 5.3149 11 8 4.1868 -1.2261 6.0879 12 6 2.0550 -2.3498 6.2708 13 7 2.4216 -2.8734 7.5934 14 6 1.2300 -3.0748 8.4286 15 6 1.6511 -3.6202 9.7947 16 6 0.4101 -3.8294 10.6648 17 6 0.8249 -4.3659 12.0106 18 1 1.8691 -4.5399 12.2242 19 6 -0.1289 -4.6347 12.9694 20 7 -1.4005 -4.4224 12.7095 21 14 0.3852 -5.2991 14.6378 22 1 0.6399 -4.1669 15.5644 23 1 -0.6988 -6.1532 15.1860 24 1 1.6234 -6.1053 14.4893 25 6 2.7661 -0.2562 3.8952 26 6 2.4256 0.2375 2.6497 27 1 -0.3635 0.6379 0.8056 28 1 -0.3634 0.3786 -0.9554 29 1 -0.3633 -1.0168 0.1497 30 1 2.2918 -2.6650 0.9365 31 1 2.9048 -3.5438 3.1535 32 1 3.7966 -0.3520 6.2255 33 1 1.3934 -3.0568 5.7703 34 1 1.5440 -1.3941 6.3875 35 1 3.0853 -2.2668 8.0512 36 1 0.7135 -2.1242 8.5600 37 1 0.5625 -3.7871 7.9435 38 1 2.1674 -4.5710 9.6630 39 1 2.3188 -2.9083 10.2800 40 1 -0.1058 -2.8783 10.7965 41 1 -0.2580 -4.5410 10.1797 42 1 -2.0715 -4.6112 13.3842 43 1 2.8968 0.4203 4.7269 44 1 2.2901 1.2996 2.5084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326600194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:27 Heat of formation + Delta-G solvation = -106.042478 kcal Electronic energy + Delta-G solvation = -24342.744476 eV Core-core repulsion = 20579.922604 eV Total energy + Delta-G solvation = -3762.821872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.26569 -37.83757 -37.56813 -36.40063 -35.83815 -33.49505 -32.48421 -31.51470 -31.20240 -30.05543 -28.26943 -25.90364 -23.71772 -23.39502 -22.17507 -21.70041 -20.13828 -19.54759 -18.50077 -17.34957 -16.80744 -16.66361 -16.42769 -16.04694 -15.76885 -15.31483 -15.01023 -14.60356 -14.40751 -14.17945 -14.04366 -13.89595 -13.74723 -13.74201 -13.41372 -12.98483 -12.67125 -12.54274 -12.44902 -12.15177 -11.86110 -11.71044 -11.66287 -11.55536 -11.37418 -11.19610 -10.86548 -10.65778 -10.60361 -10.41175 -9.73648 -9.64720 -9.52663 -9.34232 -9.07278 -8.36368 -8.29758 -6.01407 -4.03411 -0.44995 0.30126 0.81843 2.36681 2.89055 3.31229 3.37379 3.41377 3.44665 3.61507 3.87915 4.04558 4.18699 4.23196 4.39710 4.42954 4.44863 4.62211 4.74073 4.81457 4.88968 5.00000 5.09290 5.19254 5.34523 5.38949 5.45134 5.56414 5.57334 5.63520 5.72524 5.83385 6.01166 6.25194 6.32094 6.66132 6.69098 7.09839 7.18375 7.24398 7.54646 7.66140 7.80314 7.98740 8.42096 9.03728 9.60663 11.10027 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.030043 B = 0.001688 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.767115 B =16586.529910 C =16971.412373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.501 3.499 3 O -0.938 6.938 4 O -0.938 6.938 5 C -0.664 4.664 6 C -0.021 4.021 7 C -0.129 4.129 8 C -0.056 4.056 9 C 0.141 3.859 10 H 0.123 0.877 11 O -0.547 6.547 12 C 0.033 3.967 13 N -0.686 5.686 14 C 0.059 3.941 15 C -0.107 4.107 16 C 0.022 3.978 17 C -0.519 4.519 18 H 0.056 0.944 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C -0.134 4.134 26 C -0.020 4.020 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.372 0.628 33 H 0.082 0.918 34 H 0.031 0.969 35 H 0.345 0.655 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.013 0.987 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.131 0.869 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 10.532 -27.559 29.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.681 3.319 3 O -0.936 6.936 4 O -0.935 6.935 5 C -0.751 4.751 6 C -0.040 4.040 7 C -0.147 4.147 8 C -0.057 4.057 9 C 0.081 3.919 10 H 0.141 0.859 11 O -0.352 6.352 12 C -0.097 4.097 13 N -0.318 5.318 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.016 4.016 17 C -0.557 4.557 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.152 4.152 26 C -0.039 4.039 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.220 0.780 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.164 0.836 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.149 0.851 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.010 9.603 -28.337 30.337 hybrid contribution -1.044 0.724 1.913 2.296 sum 3.967 10.327 -26.424 28.647 Atomic orbital electron populations 1.30224 1.25533 1.12252 1.11961 1.05116 0.77875 0.74614 0.74299 1.93591 1.77360 1.36534 1.86075 1.93592 1.77348 1.61640 1.60946 1.30522 1.19438 1.03077 1.22034 1.20958 0.92146 0.93181 0.97714 1.21184 1.00868 1.00453 0.92245 1.21011 0.93679 0.94280 0.96708 1.21103 0.91431 0.93397 0.85938 0.85950 1.86704 1.43080 1.25273 1.80182 1.22572 0.95855 0.99073 0.92195 1.60471 1.15386 1.53031 1.02946 1.22151 0.90849 0.99120 0.94772 1.21629 1.00596 0.99971 0.92330 1.19067 0.91922 0.96834 0.93730 1.21259 0.93232 1.42922 0.98317 0.92620 1.25040 0.94965 0.95788 0.98801 1.69967 1.00086 1.49080 1.34502 0.86578 0.78237 0.78941 0.84157 1.20698 1.21237 1.19834 1.21029 1.01371 0.95028 0.97812 1.20901 0.92229 0.99462 0.91320 0.84891 0.84936 0.84860 0.83869 0.84468 0.78048 0.89973 0.95069 0.83615 0.95793 0.91500 0.92452 0.93560 0.96853 0.96592 0.93039 0.85102 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.50 10.80 101.05 1.09 -0.41 16 2 S 2.50 15.43 5.80 -107.50 -0.62 14.80 16 3 O -0.94 -8.80 17.13 -57.54 -0.99 -9.79 16 4 O -0.94 -8.80 17.13 -57.54 -0.99 -9.79 16 5 C -0.66 -4.80 5.66 -39.59 -0.22 -5.02 16 6 C -0.02 -0.16 9.47 -39.58 -0.37 -0.53 16 7 C -0.13 -1.00 9.68 -39.58 -0.38 -1.38 16 8 C -0.06 -0.46 5.00 -104.63 -0.52 -0.99 16 9 C 0.14 1.29 3.48 -27.88 -0.10 1.19 16 10 H 0.12 1.18 8.05 -51.93 -0.42 0.76 16 11 O -0.55 -5.27 12.47 -35.23 -0.44 -5.71 16 12 C 0.03 0.35 5.37 -3.82 -0.02 0.33 16 13 N -0.69 -9.41 6.50 -113.78 -0.74 -10.15 16 14 C 0.06 0.99 5.68 -3.82 -0.02 0.96 16 15 C -0.11 -2.20 5.41 -26.73 -0.14 -2.34 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 17 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 21 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.13 -1.00 9.33 -39.59 -0.37 -1.37 16 26 C -0.02 -0.15 9.47 -39.59 -0.37 -0.52 16 27 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.13 0.13 8.14 -51.92 -0.42 -0.29 16 29 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 30 H 0.14 0.80 7.57 -52.49 -0.40 0.40 16 31 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.37 2.36 7.40 45.56 0.34 2.70 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.35 4.62 8.12 -39.29 -0.32 4.31 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.13 0.70 6.62 -52.48 -0.35 0.35 16 44 H 0.14 0.79 7.57 -52.48 -0.40 0.39 16 LS Contribution 381.08 15.07 5.74 5.74 Total: -1.00 -37.26 381.08 -10.46 -47.72 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.16 Total: -0.04 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -1.99 Total: -23.25 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.00 Total: -36.37 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -2.41 Total: -25.29 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 15.43 SS G_CDS: -0.62 Total: 14.80 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.26 -10.46 -47.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326600194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.322 kcal (2) G-P(sol) polarization free energy of solvation -37.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds