Wall clock time and date at job start Tue Mar 31 2020 14:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35591 * 117.00171 * 2 1 4 4 C 1.40004 * 118.80743 * 180.02562 * 3 2 1 5 5 C 1.38795 * 119.43632 * 179.72585 * 4 3 2 6 6 C 1.47817 * 121.35780 * 180.02562 * 5 4 3 7 7 O 1.21464 * 120.00046 * 174.52584 * 6 5 4 8 8 O 1.34709 * 120.00390 * 354.52896 * 6 5 4 9 9 C 1.45206 * 117.00428 * 185.16068 * 8 6 5 10 10 C 1.50703 * 112.84296 * 54.11089 * 9 8 6 11 11 H 1.08007 * 119.99980 * 239.75398 * 10 9 8 12 12 C 1.37881 * 120.00226 * 59.75860 * 10 9 8 13 13 N 1.31516 * 119.99915 * 188.36387 * 12 10 9 14 14 Si 1.86794 * 119.99945 * 8.36707 * 12 10 9 15 15 H 1.48498 * 109.47379 * 95.00337 * 14 12 10 16 16 H 1.48500 * 109.47012 * 215.00426 * 14 12 10 17 17 H 1.48501 * 109.47266 * 335.00352 * 14 12 10 18 18 C 1.53777 * 113.61591 * 282.80575 * 9 8 6 19 19 C 1.53779 * 87.08015 * 220.01624 * 18 9 8 20 20 C 1.53777 * 113.61739 * 185.30356 * 9 8 6 21 21 C 1.46338 * 117.28189 * 0.02562 * 5 4 3 22 22 C 1.39916 * 121.55406 * 179.97438 * 21 5 4 23 23 C 1.36347 * 119.58327 * 179.97438 * 22 21 5 24 24 C 1.39295 * 120.80021 * 0.09102 * 23 22 21 25 25 C 1.36114 * 121.08059 * 359.92792 * 24 23 22 26 26 C 1.40630 * 119.72755 * 0.02562 * 25 24 23 27 27 N 1.31207 * 118.80549 * 359.73829 * 3 2 1 28 28 H 1.09004 * 109.46720 * 299.99241 * 1 2 3 29 29 H 1.08998 * 109.47625 * 59.99575 * 1 2 3 30 30 H 1.09008 * 109.47389 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.27938 * 359.74610 * 4 3 2 32 32 H 0.97002 * 119.99681 * 179.97438 * 13 12 10 33 33 H 1.08999 * 113.61245 * 334.56833 * 18 9 8 34 34 H 1.09006 * 113.61205 * 105.46439 * 18 9 8 35 35 H 1.08999 * 113.61091 * 270.88399 * 19 18 9 36 36 H 1.08998 * 113.69107 * 139.99333 * 19 18 9 37 37 H 1.08997 * 113.61631 * 254.53501 * 20 9 8 38 38 H 1.09003 * 113.61464 * 25.35451 * 20 9 8 39 39 H 1.07997 * 120.21210 * 0.02562 * 22 21 5 40 40 H 1.07995 * 119.59748 * 180.02562 * 23 22 21 41 41 H 1.08007 * 119.45638 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.13679 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 3.4439 1.2522 -0.0005 5 6 4.0876 2.4819 -0.0063 6 6 5.5627 2.5780 -0.0077 7 8 6.1006 3.6619 -0.1131 8 8 6.3104 1.4634 0.1079 9 6 7.7475 1.6418 0.2150 10 6 8.1395 2.5762 1.3306 11 1 8.6947 3.4763 1.1111 12 6 7.7895 2.2821 2.6314 13 7 7.9840 3.1703 3.5816 14 14 7.0390 0.6221 3.0440 15 1 8.1070 -0.3054 3.4962 16 1 6.0361 0.7876 4.1267 17 1 6.3772 0.0643 1.8373 18 6 8.4305 1.9592 -1.1257 19 6 9.5696 1.0293 -0.6756 20 6 8.5342 0.3205 0.2132 21 6 3.2464 3.6793 -0.0110 22 6 3.8012 4.9638 -0.0165 23 6 2.9795 6.0519 -0.0213 24 6 1.5949 5.9000 -0.0189 25 6 1.0235 4.6646 -0.0132 26 6 1.8391 3.5191 -0.0091 27 7 1.3072 2.2934 -0.0053 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0176 0.3372 0.0032 32 1 7.7374 2.9635 4.4966 33 1 7.8826 1.5906 -1.9928 34 1 8.7319 3.0020 -1.2261 35 1 10.3524 1.5384 -0.1132 36 1 9.9630 0.4005 -1.4743 37 1 8.9192 0.0402 1.1937 38 1 8.0140 -0.4966 -0.2867 39 1 4.8734 5.0927 -0.0177 40 1 3.4074 7.0434 -0.0259 41 1 0.9644 6.7770 -0.0224 42 1 -0.0519 4.5646 -0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344835459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:53 Heat of formation + Delta-G solvation = -24.274461 kcal Electronic energy + Delta-G solvation = -28192.316814 eV Core-core repulsion = 24297.596717 eV Total energy + Delta-G solvation = -3894.720096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.92270 -39.59935 -38.82903 -37.39937 -36.07300 -34.64786 -33.14735 -32.41449 -30.31846 -29.79866 -27.57629 -26.72410 -25.00187 -24.79291 -23.45135 -23.03318 -22.26827 -20.43762 -18.74185 -18.57472 -17.97833 -17.17730 -16.98431 -16.11119 -15.76447 -15.46007 -15.37420 -15.05130 -14.87786 -14.48675 -14.16841 -13.98039 -13.73033 -13.68350 -13.07861 -12.97055 -12.81048 -12.06115 -12.02795 -11.78716 -11.71754 -11.53028 -11.34406 -11.14353 -11.05206 -10.76977 -10.66741 -10.29070 -10.24426 -10.07909 -10.05343 -9.83632 -9.36291 -9.10115 -8.83002 -8.59440 -8.48734 -8.02764 -6.27931 -4.32848 0.22367 0.92800 1.84029 2.89362 2.92109 3.19054 3.24047 3.39393 3.47819 3.60645 4.19253 4.24066 4.31703 4.68096 4.81291 4.95362 5.05621 5.07713 5.17795 5.22505 5.28705 5.37941 5.44882 5.47903 5.54937 5.63376 5.66895 5.73086 5.84755 5.98723 6.11934 6.20869 6.31579 6.33919 6.36861 6.53035 6.60183 6.65729 6.77218 6.86816 6.89018 7.16795 7.18288 7.35044 7.67992 7.82467 8.28437 8.71974 8.83237 9.32967 10.82109 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.004938 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.313156 B = 5668.645721 C = 6450.004602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.306 6.306 3 C 0.348 3.652 4 C -0.127 4.127 5 C -0.017 4.017 6 C 0.507 3.493 7 O -0.463 6.463 8 O -0.359 6.359 9 C 0.198 3.802 10 C -0.505 4.505 11 H 0.087 0.913 12 C 0.085 3.915 13 N -0.872 5.872 14 Si 0.852 3.148 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.231 1.231 18 C -0.147 4.147 19 C -0.124 4.124 20 C -0.130 4.130 21 C -0.097 4.097 22 C -0.076 4.076 23 C -0.135 4.135 24 C -0.090 4.090 25 C -0.115 4.115 26 C 0.162 3.838 27 N -0.533 5.533 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.160 0.840 32 H 0.267 0.733 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.168 0.832 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.471 -2.333 -8.182 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.154 3.846 4 C -0.147 4.147 5 C -0.026 4.026 6 C 0.348 3.652 7 O -0.350 6.350 8 O -0.276 6.276 9 C 0.165 3.835 10 C -0.542 4.542 11 H 0.105 0.895 12 C -0.121 4.121 13 N -0.508 5.508 14 Si 0.678 3.322 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.154 1.154 18 C -0.185 4.185 19 C -0.161 4.161 20 C -0.167 4.167 21 C -0.100 4.100 22 C -0.094 4.094 23 C -0.154 4.154 24 C -0.109 4.109 25 C -0.133 4.133 26 C 0.043 3.957 27 N -0.261 5.261 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.178 0.822 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.185 0.815 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.054 -2.240 -8.043 15.496 hybrid contribution 0.159 -0.655 0.611 0.909 sum -12.895 -2.895 -7.432 15.163 Atomic orbital electron populations 1.22858 0.77200 1.02821 1.02574 1.86245 1.22994 1.24550 1.87373 1.19740 0.88808 0.84770 0.91327 1.21580 0.91694 0.99588 1.01859 1.20953 0.92187 0.92265 0.97205 1.20182 0.85907 0.83948 0.75149 1.90643 1.73172 1.28346 1.42800 1.86643 1.24725 1.34732 1.81537 1.21789 0.72261 0.94612 0.94864 1.20759 1.36912 1.07873 0.88627 0.89497 1.24981 0.94053 0.96781 0.96285 1.69927 1.45667 1.33766 1.01454 0.87226 0.79929 0.85231 0.79861 1.20252 1.21577 1.15395 1.23359 0.97471 1.00250 0.97371 1.22469 0.96529 0.98442 0.98686 1.23285 0.96729 0.96670 1.00053 1.19514 0.92670 0.93511 1.04258 1.21924 1.03459 0.90234 0.93793 1.21021 0.93244 0.99344 1.01744 1.20923 0.95272 0.97045 0.97677 1.20588 0.99516 0.90203 1.03030 1.18251 0.89609 0.90166 0.97680 1.67060 1.40036 0.98154 1.20828 0.92195 0.92213 0.88648 0.82227 0.92273 0.91594 0.91132 0.89543 0.92322 0.91251 0.91196 0.81482 0.85403 0.85510 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.35 101.05 1.05 1.46 16 2 O -0.31 -4.34 10.45 -18.47 -0.19 -4.53 16 3 C 0.35 5.64 7.49 -17.16 -0.13 5.51 16 4 C -0.13 -2.20 9.62 -38.71 -0.37 -2.58 16 5 C -0.02 -0.34 6.08 -102.52 -0.62 -0.96 16 6 C 0.51 11.28 7.47 34.65 0.26 11.54 16 7 O -0.46 -11.11 12.19 -19.24 -0.23 -11.35 16 8 O -0.36 -8.10 7.17 -40.52 -0.29 -8.40 16 9 C 0.20 4.55 0.25 -90.96 -0.02 4.52 16 10 C -0.51 -13.68 7.10 -34.44 -0.24 -13.92 16 11 H 0.09 2.61 8.05 -52.48 -0.42 2.19 16 12 C 0.09 2.38 5.47 -17.82 -0.10 2.29 16 13 N -0.87 -25.98 13.96 55.43 0.77 -25.21 16 14 Si 0.85 20.88 24.92 -169.99 -4.24 16.65 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 17 H -0.23 -5.34 5.45 56.52 0.31 -5.03 16 18 C -0.15 -2.93 7.12 -25.92 -0.18 -3.11 16 19 C -0.12 -2.23 7.80 -25.92 -0.20 -2.43 16 20 C -0.13 -2.60 6.13 -25.92 -0.16 -2.76 16 21 C -0.10 -1.78 5.90 -104.71 -0.62 -2.40 16 22 C -0.08 -1.33 9.31 -39.63 -0.37 -1.70 16 23 C -0.14 -1.89 9.97 -39.87 -0.40 -2.29 16 24 C -0.09 -1.09 9.94 -39.95 -0.40 -1.49 16 25 C -0.11 -1.54 9.99 -39.44 -0.39 -1.94 16 26 C 0.16 2.67 6.62 -84.89 -0.56 2.11 16 27 N -0.53 -8.61 9.00 -11.13 -0.10 -8.71 16 28 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.16 2.61 7.72 -52.49 -0.41 2.20 16 32 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.45 6.16 -51.93 -0.32 1.13 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.17 3.26 5.17 -52.49 -0.27 2.99 16 40 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 42 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -31.32 348.49 -7.78 -39.10 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.29 Total: 5.33 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -3.47 Total: -8.13 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.67 Total: -33.92 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.72 Total: -24.28 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.24 Total: 16.65 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.32 -7.78 -39.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344835459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.828 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds