Wall clock time and date at job start Tue Mar 31 2020 14:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35591 * 117.00171 * 2 1 4 4 C 1.40004 * 118.80743 * 180.02562 * 3 2 1 5 5 C 1.38795 * 119.43632 * 179.72585 * 4 3 2 6 6 C 1.47817 * 121.35780 * 180.02562 * 5 4 3 7 7 O 1.21464 * 120.00046 * 174.52584 * 6 5 4 8 8 O 1.34709 * 120.00390 * 354.52896 * 6 5 4 9 9 C 1.45206 * 117.00428 * 185.16068 * 8 6 5 10 10 C 1.50703 * 112.84296 * 54.11089 * 9 8 6 11 11 H 1.08007 * 119.99980 * 239.75398 * 10 9 8 12 12 C 1.37881 * 120.00226 * 59.75860 * 10 9 8 13 13 N 1.31516 * 119.99915 * 188.36387 * 12 10 9 14 14 Si 1.86794 * 119.99945 * 8.36707 * 12 10 9 15 15 H 1.48498 * 109.47379 * 95.00337 * 14 12 10 16 16 H 1.48500 * 109.47012 * 215.00426 * 14 12 10 17 17 H 1.48501 * 109.47266 * 335.00352 * 14 12 10 18 18 C 1.53777 * 113.61591 * 282.80575 * 9 8 6 19 19 C 1.53779 * 87.08015 * 220.01624 * 18 9 8 20 20 C 1.53777 * 113.61739 * 185.30356 * 9 8 6 21 21 C 1.46338 * 117.28189 * 0.02562 * 5 4 3 22 22 C 1.39916 * 121.55406 * 179.97438 * 21 5 4 23 23 C 1.36347 * 119.58327 * 179.97438 * 22 21 5 24 24 C 1.39295 * 120.80021 * 0.09102 * 23 22 21 25 25 C 1.36114 * 121.08059 * 359.92792 * 24 23 22 26 26 C 1.40630 * 119.72755 * 0.02562 * 25 24 23 27 27 N 1.31207 * 118.80549 * 359.73829 * 3 2 1 28 28 H 1.09004 * 109.46720 * 299.99241 * 1 2 3 29 29 H 1.08998 * 109.47625 * 59.99575 * 1 2 3 30 30 H 1.09008 * 109.47389 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.27938 * 359.74610 * 4 3 2 32 32 H 0.97002 * 119.99681 * 179.97438 * 13 12 10 33 33 H 1.08999 * 113.61245 * 334.56833 * 18 9 8 34 34 H 1.09006 * 113.61205 * 105.46439 * 18 9 8 35 35 H 1.08999 * 113.61091 * 270.88399 * 19 18 9 36 36 H 1.08998 * 113.69107 * 139.99333 * 19 18 9 37 37 H 1.08997 * 113.61631 * 254.53501 * 20 9 8 38 38 H 1.09003 * 113.61464 * 25.35451 * 20 9 8 39 39 H 1.07997 * 120.21210 * 0.02562 * 22 21 5 40 40 H 1.07995 * 119.59748 * 180.02562 * 23 22 21 41 41 H 1.08007 * 119.45638 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.13679 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 3.4439 1.2522 -0.0005 5 6 4.0876 2.4819 -0.0063 6 6 5.5627 2.5780 -0.0077 7 8 6.1006 3.6619 -0.1131 8 8 6.3104 1.4634 0.1079 9 6 7.7475 1.6418 0.2150 10 6 8.1395 2.5762 1.3306 11 1 8.6947 3.4763 1.1111 12 6 7.7895 2.2821 2.6314 13 7 7.9840 3.1703 3.5816 14 14 7.0390 0.6221 3.0440 15 1 8.1070 -0.3054 3.4962 16 1 6.0361 0.7876 4.1267 17 1 6.3772 0.0643 1.8373 18 6 8.4305 1.9592 -1.1257 19 6 9.5696 1.0293 -0.6756 20 6 8.5342 0.3205 0.2132 21 6 3.2464 3.6793 -0.0110 22 6 3.8012 4.9638 -0.0165 23 6 2.9795 6.0519 -0.0213 24 6 1.5949 5.9000 -0.0189 25 6 1.0235 4.6646 -0.0132 26 6 1.8391 3.5191 -0.0091 27 7 1.3072 2.2934 -0.0053 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0176 0.3372 0.0032 32 1 7.7374 2.9635 4.4966 33 1 7.8826 1.5906 -1.9928 34 1 8.7319 3.0020 -1.2261 35 1 10.3524 1.5384 -0.1132 36 1 9.9630 0.4005 -1.4743 37 1 8.9192 0.0402 1.1937 38 1 8.0140 -0.4966 -0.2867 39 1 4.8734 5.0927 -0.0177 40 1 3.4074 7.0434 -0.0259 41 1 0.9644 6.7770 -0.0224 42 1 -0.0519 4.5646 -0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344835459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:52 Heat of formation + Delta-G solvation = -44.317431 kcal Electronic energy + Delta-G solvation = -28193.185942 eV Core-core repulsion = 24297.596717 eV Total energy + Delta-G solvation = -3895.589225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21303 -41.24676 -39.98058 -39.04480 -37.24751 -36.37753 -34.58118 -34.44883 -31.49238 -30.99229 -28.83056 -28.39844 -26.62468 -26.27727 -24.79362 -24.39330 -23.64981 -21.89951 -20.50553 -19.98056 -19.19883 -18.85516 -18.28548 -17.42458 -17.30820 -17.15233 -17.05393 -16.25655 -16.13334 -16.06256 -15.61034 -15.40099 -15.07695 -14.97969 -14.84209 -14.43388 -14.24913 -13.55905 -13.44058 -13.05753 -12.93435 -12.91372 -12.87593 -12.70838 -12.45791 -12.40542 -12.06750 -11.92047 -11.71367 -11.67005 -11.59932 -11.55691 -11.14364 -10.84416 -10.57060 -10.52418 -9.68914 -9.21780 -8.44556 -6.52654 -1.11205 -0.28912 0.57473 1.24546 1.26366 1.47429 1.55772 1.69751 1.93160 2.07875 2.26623 2.91694 2.96968 3.05308 3.40234 3.55995 3.61777 3.85312 3.90859 3.96011 4.08002 4.15384 4.24398 4.30539 4.42349 4.44915 4.45262 4.52976 4.59562 4.71240 4.80171 4.84145 4.86179 5.01163 5.05967 5.12470 5.21438 5.22627 5.35188 5.46905 5.52154 5.59975 5.72392 5.81909 6.06833 6.25455 6.55975 6.57197 6.96840 7.17044 8.69990 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.004938 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.313156 B = 5668.645721 C = 6450.004602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.341 3.659 4 C -0.117 4.117 5 C -0.050 4.050 6 C 0.501 3.499 7 O -0.495 6.495 8 O -0.356 6.356 9 C 0.176 3.824 10 C -0.500 4.500 11 H 0.036 0.964 12 C 0.032 3.968 13 N -0.926 5.926 14 Si 0.905 3.095 15 H -0.259 1.259 16 H -0.300 1.300 17 H -0.208 1.208 18 C -0.144 4.144 19 C -0.108 4.108 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.077 4.077 25 C -0.107 4.107 26 C 0.145 3.855 27 N -0.521 5.521 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.128 0.872 31 H 0.168 0.832 32 H 0.267 0.733 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.135 0.865 40 H 0.152 0.848 41 H 0.175 0.825 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.468 -4.060 -9.538 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.216 6.216 3 C 0.146 3.854 4 C -0.137 4.137 5 C -0.058 4.058 6 C 0.345 3.655 7 O -0.383 6.383 8 O -0.274 6.274 9 C 0.142 3.858 10 C -0.537 4.537 11 H 0.054 0.946 12 C -0.169 4.169 13 N -0.565 5.565 14 Si 0.728 3.272 15 H -0.184 1.184 16 H -0.227 1.227 17 H -0.130 1.130 18 C -0.181 4.181 19 C -0.145 4.145 20 C -0.162 4.162 21 C -0.117 4.117 22 C -0.135 4.135 23 C -0.137 4.137 24 C -0.097 4.097 25 C -0.126 4.126 26 C 0.026 3.974 27 N -0.249 5.249 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.186 0.814 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.152 0.848 40 H 0.169 0.831 41 H 0.193 0.807 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.052 -3.992 -9.425 19.038 hybrid contribution 0.969 0.052 0.955 1.362 sum -15.083 -3.940 -8.470 17.742 Atomic orbital electron populations 1.23190 0.74987 1.05139 1.02739 1.86245 1.25115 1.23204 1.87007 1.19727 0.88506 0.85569 0.91569 1.21680 0.92681 0.98969 1.00418 1.20790 0.90418 0.94010 1.00616 1.20749 0.87280 0.83397 0.74098 1.90648 1.74142 1.29242 1.44261 1.86599 1.24302 1.34742 1.81748 1.21925 0.72598 0.96286 0.95006 1.20778 1.35827 1.06811 0.90259 0.94581 1.25769 0.94743 1.00236 0.96146 1.70070 1.48425 1.36074 1.01897 0.86386 0.79442 0.81315 0.80024 1.18412 1.22704 1.12958 1.23357 0.98325 0.99732 0.96723 1.22416 0.95240 0.97732 0.99154 1.23324 0.96492 0.95860 1.00485 1.19688 0.93671 0.93257 1.05057 1.21735 1.02485 0.91627 0.97686 1.21388 0.94220 0.99231 0.98819 1.21387 0.94532 0.98360 0.95376 1.21028 1.00782 0.89450 1.01300 1.18658 0.89075 0.91381 0.98328 1.67146 1.39669 0.98046 1.20045 0.92232 0.91761 0.85348 0.81427 0.92377 0.89264 0.93452 0.90926 0.87832 0.92165 0.87982 0.84797 0.83074 0.80745 0.81895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.35 113.37 1.17 1.76 16 2 O -0.31 -8.10 10.45 -89.01 -0.93 -9.03 16 3 C 0.34 10.59 7.49 85.21 0.64 11.23 16 4 C -0.12 -4.03 9.62 22.83 0.22 -3.81 16 5 C -0.05 -2.00 6.08 -18.50 -0.11 -2.11 16 6 C 0.50 23.34 7.47 70.36 0.53 23.87 16 7 O -0.49 -25.61 12.19 19.95 0.24 -25.37 16 8 O -0.36 -16.23 7.17 -56.19 -0.40 -16.63 16 9 C 0.18 8.16 0.25 -11.02 0.00 8.16 16 10 C -0.50 -28.58 7.10 25.60 0.18 -28.40 16 11 H 0.04 2.36 8.05 -2.91 -0.02 2.34 16 12 C 0.03 1.85 5.47 84.66 0.46 2.32 16 13 N -0.93 -58.44 13.96 21.45 0.30 -58.14 16 14 Si 0.91 43.73 24.92 68.60 1.71 45.44 16 15 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 16 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 17 H -0.21 -9.15 5.45 99.48 0.54 -8.61 16 18 C -0.14 -5.74 7.12 31.12 0.22 -5.51 16 19 C -0.11 -3.70 7.80 31.12 0.24 -3.46 16 20 C -0.12 -4.73 6.13 31.12 0.19 -4.54 16 21 C -0.11 -4.28 5.90 -19.92 -0.12 -4.39 16 22 C -0.12 -4.26 9.31 22.24 0.21 -4.05 16 23 C -0.12 -3.16 9.97 22.08 0.22 -2.94 16 24 C -0.08 -1.60 9.94 22.03 0.22 -1.38 16 25 C -0.11 -2.53 9.99 22.36 0.22 -2.31 16 26 C 0.14 4.58 6.62 40.30 0.27 4.84 16 27 N -0.52 -15.90 9.00 -302.56 -2.72 -18.62 16 28 H 0.06 1.06 8.09 -2.38 -0.02 1.04 16 29 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 30 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.17 5.33 7.72 -2.91 -0.02 5.30 16 32 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 33 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.05 2.07 8.09 -2.38 -0.02 2.05 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.06 2.41 6.16 -2.39 -0.01 2.39 16 38 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.13 5.76 5.17 -2.91 -0.02 5.74 16 40 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 41 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -74.65 348.49 3.84 -70.81 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.88 Total: 22.26 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 4.76 Total: -10.72 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -2.42 Total: -76.76 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -1.09 Total: -51.03 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.71 Total: 45.44 kcal Total: -74.65 3.84 -70.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344835459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.489 kcal (2) G-P(sol) polarization free energy of solvation -74.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds