Wall clock time and date at job start Tue Mar 31 2020 14:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35978 * 117.00274 * 2 1 4 4 C 1.38695 * 120.00257 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.99936 * 180.27941 * 4 3 2 6 6 C 1.38694 * 119.99554 * 359.49346 * 5 4 3 7 7 O 1.35985 * 119.99778 * 180.23334 * 6 5 4 8 8 C 1.42904 * 116.99701 * 0.27788 * 7 6 5 9 9 C 1.50708 * 109.46997 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99996 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99799 * 179.97438 * 9 8 7 12 12 C 1.39937 * 119.99828 * 174.89105 * 11 9 8 13 13 C 1.39295 * 119.95282 * 145.78421 * 12 11 9 14 14 C 1.38479 * 120.43318 * 179.97438 * 13 12 11 15 15 C 1.37684 * 120.32305 * 359.97438 * 14 13 12 16 16 C 1.40739 * 119.88171 * 0.02562 * 15 14 13 17 17 C 1.41413 * 120.21024 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00479 * 205.18347 * 17 16 15 19 19 C 1.39938 * 119.99814 * 25.17598 * 17 16 15 20 20 N 1.30826 * 119.99799 * 16.79749 * 19 17 16 21 21 Si 1.86796 * 120.00253 * 196.79196 * 19 17 16 22 22 H 1.48505 * 109.46843 * 60.00331 * 21 19 17 23 23 H 1.48492 * 109.47508 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47320 * 300.00628 * 21 19 17 25 25 C 1.38251 * 119.94569 * 325.50893 * 12 11 9 26 26 C 1.38695 * 120.00316 * 0.50656 * 6 5 4 27 27 C 1.38131 * 120.00071 * 359.74956 * 26 6 5 28 28 H 1.09005 * 109.47047 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46608 * 299.99626 * 1 2 3 30 30 H 1.08993 * 109.47304 * 59.99153 * 1 2 3 31 31 H 1.07997 * 120.00215 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.99982 * 179.72399 * 5 4 3 33 33 H 1.09005 * 109.47068 * 299.99204 * 8 7 6 34 34 H 1.08992 * 109.47425 * 59.99995 * 8 7 6 35 35 H 0.96996 * 120.00430 * 354.88603 * 11 9 8 36 36 H 1.08003 * 119.77637 * 359.97438 * 13 12 11 37 37 H 1.07996 * 119.84082 * 179.97438 * 14 13 12 38 38 H 1.08004 * 120.06093 * 179.97438 * 15 14 13 39 39 H 0.97002 * 120.00017 * 179.97438 * 20 19 17 40 40 H 1.07999 * 120.16131 * 359.97438 * 25 12 11 41 41 H 1.08005 * 119.99999 * 179.72628 * 26 6 5 42 42 H 1.07997 * 119.99718 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4314 1.2841 -0.0005 5 6 4.0586 2.5150 0.0053 6 6 3.3031 3.6781 0.0011 7 8 3.9205 4.8897 0.0020 8 6 5.3495 4.8897 0.0013 9 6 5.8519 6.3106 0.0031 10 8 5.0637 7.2324 0.0045 11 7 7.1769 6.5568 0.0034 12 6 7.6442 7.8715 -0.1028 13 6 8.8061 8.2527 0.5643 14 6 9.2778 9.5509 0.4657 15 6 8.6030 10.4799 -0.2941 16 6 7.4276 10.1093 -0.9738 17 6 6.7287 11.0580 -1.7557 18 1 5.6712 10.9345 -1.9370 19 6 7.4073 12.1568 -2.2945 20 7 8.7137 12.1486 -2.3647 21 14 6.4480 13.6352 -2.9137 22 1 5.6565 14.2140 -1.7984 23 1 7.3928 14.6564 -3.4328 24 1 5.5318 13.2102 -4.0024 25 6 6.9552 8.7887 -0.8744 26 6 1.9181 3.6055 0.0016 27 6 1.2910 2.3748 0.0011 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8898 31 1 4.0197 0.3784 -0.0014 32 1 5.1370 2.5715 0.0094 33 1 5.7133 4.3750 0.8907 34 1 5.7124 4.3768 -0.8893 35 1 7.8066 5.8228 0.0772 36 1 9.3425 7.5308 1.1624 37 1 10.1794 9.8362 0.9873 38 1 8.9744 11.4914 -0.3677 39 1 9.1841 12.9102 -2.7385 40 1 6.0569 8.4930 -1.3960 41 1 1.3298 4.5113 0.0028 42 1 0.2125 2.3183 0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361449841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:20 Heat of formation + Delta-G solvation = -76.204058 kcal Electronic energy + Delta-G solvation = -25639.581352 eV Core-core repulsion = 21742.609420 eV Total energy + Delta-G solvation = -3896.971933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.67206 -41.07102 -39.92643 -38.88490 -37.23474 -36.22918 -34.88492 -32.34037 -31.76701 -31.18907 -30.16381 -28.80287 -27.65459 -27.24041 -24.06645 -23.50046 -22.84871 -22.48648 -21.24477 -19.66453 -19.48971 -18.67695 -18.33111 -17.50290 -17.29848 -17.13687 -16.79901 -16.58501 -16.46117 -15.77674 -15.70530 -15.63545 -14.96479 -14.82592 -14.61221 -14.35176 -14.00160 -13.94378 -13.59294 -13.51158 -13.44780 -13.04154 -12.94546 -12.79370 -12.68100 -12.49062 -12.19696 -11.98862 -11.69580 -11.54644 -11.40934 -11.18818 -10.91301 -10.70063 -10.10198 -9.41139 -8.79223 -8.75485 -8.62541 -6.38423 0.24190 0.43453 0.81226 0.98569 1.34997 1.45663 1.48494 1.55323 1.71307 2.19917 2.40578 2.69348 2.71462 2.73592 3.53331 3.72421 3.81353 3.87023 3.97482 4.10514 4.11135 4.32866 4.42258 4.42462 4.46357 4.62340 4.63162 4.74465 4.88921 4.99676 5.01082 5.08068 5.10177 5.20197 5.28218 5.30998 5.31283 5.55269 5.72913 5.83517 6.06583 6.09024 6.24662 6.32526 6.48718 6.59914 6.67101 6.92012 6.99172 7.25138 8.31698 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.002089 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.655269 B =13398.459268 C =14500.590405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.079 3.921 4 C -0.116 4.116 5 C -0.165 4.165 6 C 0.074 3.926 7 O -0.323 6.323 8 C 0.053 3.947 9 C 0.500 3.500 10 O -0.557 6.557 11 N -0.649 5.649 12 C 0.157 3.843 13 C -0.246 4.246 14 C -0.091 4.091 15 C -0.196 4.196 16 C 0.087 3.913 17 C -0.504 4.504 18 H 0.061 0.939 19 C 0.038 3.962 20 N -0.820 5.820 21 Si 0.981 3.019 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.264 1.264 25 C -0.239 4.239 26 C -0.128 4.128 27 C -0.167 4.167 28 H 0.119 0.881 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.153 0.847 32 H 0.165 0.835 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.427 0.573 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.290 0.710 40 H 0.081 0.919 41 H 0.130 0.870 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.146 -23.170 4.579 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.034 3.966 4 C -0.135 4.135 5 C -0.183 4.183 6 C 0.030 3.970 7 O -0.237 6.237 8 C -0.025 4.025 9 C 0.287 3.713 10 O -0.433 6.433 11 N -0.297 5.297 12 C 0.064 3.936 13 C -0.267 4.267 14 C -0.110 4.110 15 C -0.216 4.216 16 C 0.084 3.916 17 C -0.533 4.533 18 H 0.079 0.921 19 C -0.177 4.177 20 N -0.446 5.446 21 Si 0.801 3.199 22 H -0.188 1.188 23 H -0.182 1.182 24 H -0.188 1.188 25 C -0.260 4.260 26 C -0.146 4.146 27 C -0.185 4.185 28 H 0.137 0.863 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.171 0.829 32 H 0.182 0.818 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.266 0.734 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.122 0.878 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.148 0.852 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.539 -22.451 4.476 24.434 hybrid contribution -0.322 0.779 -0.457 0.958 sum -8.861 -21.672 4.019 23.756 Atomic orbital electron populations 1.23321 0.76751 1.05532 1.02096 1.86051 1.23156 1.26351 1.89203 1.19136 0.92853 0.84596 0.99986 1.20509 0.91565 0.98658 1.02753 1.21367 1.01546 0.90425 1.04993 1.19188 0.92793 0.84079 1.00956 1.86145 1.20214 1.27792 1.89554 1.22566 0.80198 0.92576 1.07164 1.21013 0.82409 0.91837 0.75999 1.90792 1.56321 1.47862 1.48333 1.43084 1.06778 1.07475 1.72358 1.17473 0.95366 0.84118 0.96624 1.20499 1.00121 0.97545 1.08528 1.20862 0.98926 0.93245 0.97966 1.21318 0.99075 0.99633 1.01582 1.17843 0.92317 0.91228 0.90227 1.19707 0.96324 1.07420 1.29878 0.92102 1.26681 0.95848 1.01403 0.93761 1.69840 1.09481 1.31180 1.34108 0.85289 0.78877 0.76667 0.79064 1.18772 1.18250 1.18813 1.20941 1.03650 0.94234 1.07212 1.20427 0.91736 0.98797 1.03669 1.21238 1.01217 0.90607 1.05438 0.86302 0.91884 0.91979 0.82905 0.81780 0.84901 0.85481 0.73402 0.84484 0.85688 0.87766 0.89931 0.90081 0.85178 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.56 10.50 -93.30 -0.98 -6.53 16 3 C 0.08 1.46 6.69 22.49 0.15 1.61 16 4 C -0.12 -1.96 9.98 22.36 0.22 -1.74 16 5 C -0.16 -2.86 9.03 22.36 0.20 -2.65 16 6 C 0.07 1.76 6.69 22.49 0.15 1.91 16 7 O -0.32 -9.40 9.67 -74.35 -0.72 -10.12 16 8 C 0.05 1.16 5.22 71.24 0.37 1.53 16 9 C 0.50 17.30 7.63 87.66 0.67 17.97 16 10 O -0.56 -26.76 14.25 15.99 0.23 -26.53 16 11 N -0.65 -20.92 5.34 -303.64 -1.62 -22.54 16 12 C 0.16 6.95 6.25 38.10 0.24 7.18 16 13 C -0.25 -10.02 9.97 22.58 0.23 -9.80 16 14 C -0.09 -4.11 10.02 22.20 0.22 -3.89 16 15 C -0.20 -10.58 8.69 22.75 0.20 -10.38 16 16 C 0.09 5.05 5.57 -21.31 -0.12 4.93 16 17 C -0.50 -29.69 9.05 23.46 0.21 -29.48 16 18 H 0.06 3.62 7.90 -2.91 -0.02 3.60 16 19 C 0.04 2.03 5.16 85.25 0.44 2.47 16 20 N -0.82 -44.02 10.94 21.82 0.24 -43.78 16 21 Si 0.98 40.62 29.59 68.60 2.03 42.65 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 25 C -0.24 -13.01 8.39 22.85 0.19 -12.81 16 26 C -0.13 -2.89 9.98 22.35 0.22 -2.66 16 27 C -0.17 -3.03 9.03 22.35 0.20 -2.83 16 28 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 30 H 0.06 0.48 7.66 -2.39 -0.02 0.46 16 31 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.16 1.74 6.29 -2.91 -0.02 1.73 16 33 H 0.13 1.79 7.65 -2.38 -0.02 1.78 16 34 H 0.13 1.92 7.67 -2.39 -0.02 1.90 16 35 H 0.43 8.86 8.82 -92.71 -0.82 8.04 16 36 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 37 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 38 H 0.10 5.82 6.17 -2.91 -0.02 5.81 16 39 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 40 H 0.08 4.71 6.48 -2.91 -0.02 4.69 16 41 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.15 1.99 6.29 -2.91 -0.02 1.97 16 Total: -1.00 -79.83 360.03 4.34 -75.49 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.25 Total: 28.75 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 4.91 Total: -37.38 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -1.38 Total: -66.33 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -1.47 Total: -43.19 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -79.83 4.34 -75.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361449841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.716 kcal (2) G-P(sol) polarization free energy of solvation -79.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds